tag:blogger.com,1999:blog-45066138219285679342024-02-18T22:41:53.096-06:00Pandemic Influenza H1N1 Genetic AcquisitionsConsiderations on the Genetic Development of pH1N1 via RecombinationNS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comBlogger179125tag:blogger.com,1999:blog-4506613821928567934.post-67431953890567241132014-01-30T04:49:00.000-06:002014-03-25T21:45:39.399-05:00pH1N1 HA 225N Severe in Female: Spain Winter s2013<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2014_01_29_Spain_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2014-01-30<br />
Last Update : 2014-03-25</span><br />
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2014_01_29_Spain_Map.html" target="_blank"><img alt="HA 225N Severe in Female: Spain Winter s2013" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2014_01_29_Spain_Map.html" target="_blank">Geographic Distribution</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
28 Cases over 28 Sequences<br />
<hr style="width: 35%;" />
<br /></div>
On 2014-01-29, the <span style="color: #783f04;"><b>Instituto de Salud Carlos III</b></span> of <b>Spain</b> rapidly released 28 <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> <b><span style="color: #274e13;">HA</span></b> fragments at <strong>GISAID </strong>with a submission date of 2014-01-29 on 28 contemporary human cases<strong> </strong>sampled across <b>December 2013</b> to <b>January 2014</b>.<br />
<br />
We applaud the men and women of this Institute for their devotion to science, for their detailed clinical annotations and their complete age and gender features. <b><span style="color: #783f04;">Hospitalisation</span></b> is evident in 22 of the cases and in 7 of the 8 <b><span style="color: #783f04;">pediatric</span></b> patients.<br />
<br />
<b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225N</span></b>, an <b><span style="color: #660000;">immune deranging</span></b> polymorphism found on the <b><span style="color: #660000;">High-CFR</span></b> <b><span style="color: #783f04;">Upsilon</span></b> subclade, is seen in a 27 year old female in late December [<a href="http://pf11.blogspot.com/2014/01/ph1n1-ha-225n-severe-in-female-spain.html#EPI501453" target="_blank">EPI501453</a>]. Two sequences from <b>Madrid</b> in January 2014 demonstrate <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">31N</span></b>, a polymorphism found <b><span style="color: #660000;">only once</span></b> in the <b><span style="color: #4c1130;">pH1N1</span></b> reservoir (2009 Asia), but found as the wild type on <b><span style="color: #660000;">Emergent H7N9</span></b> and wild type on the most recently circulating <b><span style="color: #073763;">Seasonal H3N2</span></b>.<br />
<br />
<table align="center" border="0px" cellpadding="5px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 10px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 1px; padding-right: 1px; padding-top: 2px; width: 80%;">
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<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td>CrossSeroType Analytic</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 65%;" title="H7N9 Correlation - Hemagglutinin">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">H7N9 Correlation <span style="color: #274e13;">HA</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Name</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> SpainMadrid45_62M_2014_01_05<b><span style="color: red;">_s</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-ha-225n-severe-in-female-spain.html#EPI501451" style="font-size: 80%;" target="_blank">EPI501451</a> </td></tr>
<tr style="font-size: 90%;"><td> SpainMadrid83_62M_2014_01_09<b><span style="color: red;">_s</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-ha-225n-severe-in-female-spain.html#EPI501458" style="font-size: 80%;" target="_blank">EPI501458</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI501447"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid120_33M_2014_01_14<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/120/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised </span></b>&<b><span style="color: #993300;"> </span><span style="color: navy;">Recovered</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501447" target="_blank">EPI501447</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154263" target="_blank">EPI_ISL_154263</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#5,</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">2T</span></b> [H7N7]</div>
<div class="c">
. . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn310V (GTg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501450"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid127_38F_2014_01_13<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/127/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised </span></b>&<b><span style="color: #993300;"> </span><span style="color: navy;">Recovered</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501450" target="_blank">EPI501450</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154266" target="_blank">EPI_ISL_154266</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#9,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">129Y</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501448"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid126_58F_2014_01_13<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/126/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised </span></b>&<b><span style="color: #993300;"> </span><span style="color: navy;">Recovered</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501448" target="_blank">EPI501448</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154264" target="_blank">EPI_ISL_154264</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa6,</div>
<div class="c">
. . . . . . . . syn50V (GTg),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . syn279N (AAc),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn306C (TGc),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501446"></a><o:p></o:p></div>
<div class="c">
. . . . SpainCastillaLaMancha119_29M_2014_01_13 (</div>
<div class="c">
. . . . . . . . A/CastillaLaMancha/119/2014</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501446" target="_blank">EPI501446</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154262" target="_blank">EPI_ISL_154262</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#6,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn232Y (TAc),</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501443"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid113_55M_2014_01_13<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/113/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised </span></b>&<b><span style="color: #993300;"> </span><span style="color: navy;">Recovered</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501443" target="_blank">EPI501443</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154259" target="_blank">EPI_ISL_154259</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa8,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn295F (TTc),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501442"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid107_43M_2014_01_13<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/107/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised </span></b>&<b><span style="color: #993300;"> </span><span style="color: navy;">Recovered<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501442" target="_blank">EPI501442</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154258" target="_blank">EPI_ISL_154258</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (6 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . syn42G (GGt),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn83V (GTt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501459"></a><o:p></o:p></div>
<div class="c">
. . . . SpainAragon272_M_78M_2014_01_11<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Aragon/272/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501459" target="_blank">EPI501459</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154275" target="_blank">EPI_ISL_154275</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (6 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa6,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501462"></a><o:p></o:p></div>
<div class="c">
. . . . SpainAragon269_M_35F_2014_01_10<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Aragon/269/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501462" target="_blank">EPI501462</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154278" target="_blank">EPI_ISL_154278</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (5 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#4,</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501457"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid74_<b><span style="color: #993300;">4F</span></b>_2014_01_10<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/74/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Child</span></b> Female 4 Years</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501457" target="_blank">EPI501457</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154273" target="_blank">EPI_ISL_154273</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa0,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501461"></a><o:p></o:p></div>
<div class="c">
. . . . SpainCastillaLaMancha146_<b><span style="color: #993300;">1F</span></b>_2014_01_09<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/CastillaLaMancha/146/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b> Female 1 Year</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501461" target="_blank">EPI501461</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154277" target="_blank">EPI_ISL_154277</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#2,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501458"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid83_62M_2014_01_09<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/83/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">31N</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501458" target="_blank">EPI501458</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154274" target="_blank">EPI_ISL_154274</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#1,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">31N</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . [<b><span style="color: #4c1130;">pH1N1</span></b> <b><span style="color: #660000;">Singular</span></b>: Japan 2009],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: #073763;">Seasonal H3N2</span></b> wild type],<br />
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501456"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid69_38F_2014_01_09<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/69/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised </span></b>&<b><span style="color: #993300;"> </span><span style="color: navy;">Recovered</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501456" target="_blank">EPI501456</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154272" target="_blank">EPI_ISL_154272</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (6 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#6,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn#1A</span></b> (<b><span style="color: blue;">GCg</span></b>),</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501449"></a><o:p></o:p></div>
<div class="c">
. . . . SpainAragon268_M_67M_2014_01_09<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Aragon/268/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501449" target="_blank">EPI501449</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154265" target="_blank">EPI_ISL_154265</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#5,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn232Y (TAc),</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . syn262R (AGg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa275)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501445"></a><o:p></o:p></div>
<div class="c">
. . . . SpainCastillaLaMancha106_49F_2014_01_09 (</div>
<div class="c">
. . . . . . . . A/CastillaLaMancha/106/2014</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501445" target="_blank">EPI501445</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154261" target="_blank">EPI_ISL_154261</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#9,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">132D</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501444"></a><o:p></o:p></div>
<div class="c">
. . . . SpainCastillaLaMancha104_<b><span style="color: #993300;">14F</span></b>_2014_01_09 (</div>
<div class="c">
. . . . . . . . A/CastillaLaMancha/104/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Child</span></b> Female 14 Years</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501444" target="_blank">EPI501444</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154260" target="_blank">EPI_ISL_154260</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (6 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#9,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501455"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid60_62F_2014_01_08<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/60/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised </span></b>&<b><span style="color: #993300;"> </span><span style="color: navy;">Recovered</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501455" target="_blank">EPI501455</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154271" target="_blank">EPI_ISL_154271</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#8,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501451"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadrid45_62M_2014_01_05<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/45/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">31N</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501451" target="_blank">EPI501451</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154267" target="_blank">EPI_ISL_154267</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa3,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">31N</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: #4c1130;">pH1N1</span></b> <b><span style="color: #660000;">Singular</span></b>: Japan 2009],<br />
. . . . . . . . . . . [<b><span style="color: #073763;">Seasonal H3N2</span></b> wild type],<br />
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501465"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadridSO11443_<b><span style="color: #993300;">1F</span></b>_2014_01_04<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/SO11443/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b> Female 1 Year</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501465" target="_blank">EPI501465</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154281" target="_blank">EPI_ISL_154281</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501454"></a><o:p></o:p></div>
<div class="c">
. . . . SpainCastillaLaMancha57_60M_2014_01_03<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/CastillaLaMancha/57/2014</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501454" target="_blank">EPI501454</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154270" target="_blank">EPI_ISL_154270</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (7 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">71K</span></b> [<b><span style="color: #333399;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: 2 Cases over 2 Sequences,</div>
<div class="c">
. . . . . . . . . . . . . . . . . Singapore 2011-January,</div>
<div class="c">
. . . . . . . . . . . . . . . . . Cyprus 2009-June],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501441"></a><o:p></o:p></div>
<div class="c">
. . . . SpainPaisVasco86_M_51F_2014_01_03 (</div>
<div class="c">
. . . . . . . . A/PaisVasco/86/2014</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501441" target="_blank">EPI501441</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154257" target="_blank">EPI_ISL_154257</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn178V (GTa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501440"></a><o:p></o:p></div>
<div class="c">
. . . . SpainPaisVasco85_M_62F_2014_01_03 (</div>
<div class="c">
. . . . . . . . A/PaisVasco/85/2014</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501440" target="_blank">EPI501440</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154256" target="_blank">EPI_ISL_154256</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa0,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn178V (GTa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501452"></a><o:p></o:p></div>
<div class="c">
. . . . SpainCastillaLaMancha14046_24M_2013_12_29<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/CastillaLaMancha/14046/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501452" target="_blank">EPI501452</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154268" target="_blank">EPI_ISL_154268</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa5,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501464"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadridSO11449_<b><span style="color: #993300;">1mF</span></b>_2013_12_28<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/SO11449/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b> Female 1 Month</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501464" target="_blank">EPI501464</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154280" target="_blank">EPI_ISL_154280</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">2T</span></b> [H7N7]</div>
<div class="c">
. . . . . . . . . . [zH3N2],</div>
</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501453"></a><o:p></o:p></div>
<div class="c">
. . . . SpainCastillaLaMancha14056_27F_2013_12_27<b><span style="color: maroon;">_VxX</span><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/CastillaLaMancha/14056/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Vaccine</span></b> <b><span style="color: maroon;">Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225N</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501453" target="_blank">EPI501453</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154269" target="_blank">EPI_ISL_154269</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (7 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="c">
. . . . . . . . syn5T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue; font-size: 16.0pt;">225N</span></b> [<b><span style="color: #333399;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . HA Truncated after aa329)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501460"></a><o:p></o:p></div>
<div class="c">
. . . . SpainAragon14276_M_50F_2013_12_26 (</div>
<div class="c">
. . . . . . . . A/Aragon/14276/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501460" target="_blank">EPI501460</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154276" target="_blank">EPI_ISL_154276</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#2,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">41D</span></b> [<b><span style="color: #333399;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: #333399;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501438"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadridSO11395_<b><span style="color: #993300;">6mF</span></b>_2013_12_21<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/SO11395/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b> Female 6 Months</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501438" target="_blank">EPI501438</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154254" target="_blank">EPI_ISL_154254</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (6 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#9,</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">2T</span></b> [H7N7]</div>
<div class="c">
. . . . . . . . . . [zH3N2],</div>
</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501439"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadridSO11352_<b><span style="color: #993300;">3mF</span></b>_2013_12_16<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/SO11352/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b> Female 3 Months</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501439" target="_blank">EPI501439</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154255" target="_blank">EPI_ISL_154255</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa6,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa346)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI501437"></a><o:p></o:p></div>
<div class="c">
. . . . SpainMadridSO11366_<b><span style="color: #993300;">3mF</span></b>_2013_12_15<b><span style="color: red;">_s</span></b> (</div>
<div class="c">
. . . . . . . . A/Madrid/SO11366/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Hospitalised</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b> Female 3 Months</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/501437" target="_blank">EPI501437</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/154253" target="_blank">EPI_ISL_154253</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (6 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#2,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">2T</span></b> [H7N7]</div>
<div class="c">
. . . . . . . . . . [zH3N2],</div>
</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn116R (AGa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa315)</div>
<br />
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<br />
<div style="text-align: center;">
<span style="font-size: x-small;"><em><b><span style="color: #4c1130;">pH1N1</span></b> Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> Segments elucidated at 2014-01-30-01_40_10_368200 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2014. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2014 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-72016739567310361412014-01-09T23:06:00.000-06:002014-01-23T11:00:10.366-06:00pH1N1 Drug Resistance & Vaccine Escape: CDC Fall 2013<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_11_29_CDC_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2014-01-09<br />
Last Update : 2014-01-23</span><br />
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2013_11_29_CDC_Map.html" target="_blank"><img alt="pH1N1 Drug Resistance & Vaccine Escape: CDC Fall 2013" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2013_11_29_CDC_Map.html" target="_blank">Geographic Distribution</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
29 Cases over 32 Sequences<br />
<hr style="width: 35%;" />
<br /></div>
In the week from 2013-11-22 to 2013-11-29, the <span style="color: #783f04;"><b>United States CDC</b></span> released or updated a total of 32 <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> sequences at <strong>GISAID </strong>on 29 human cases<strong> </strong>sampled from July 2013 to November 2013. Geographic surveillance includes <b>America,</b> <b>India </b>and<b> Hong Kong. </b><br />
<br />
The sequences in this Analytic Report describe a significant level of ambiguity at the <b><span style="color: #274e13;">Hemagglutinin</span></b> segment with <b>9</b> variations. <b><span style="color: #7f6000;">Drug Resistance</span></b> is found in <b>2</b> US sequences, Louisiana and Utah.<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI489355"></a><o:p></o:p></div>
<div class="c">
. . . . Montana04_C1_46M_2013_11_06 (</div>
<div class="c">
. . . . . . . . A/Montana/04/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489355" target="_blank">EPI489355</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151038" target="_blank">EPI_ISL_151038</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">368Q</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489325"></a><o:p></o:p></div>
<div class="c">
. . . . Nebraska08_C1_38F_2013_11_05 (</div>
<div class="c">
. . . . . . . . A/Nebraska/08/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489325" target="_blank">EPI489325</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151028" target="_blank">EPI_ISL_151028</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (10 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn135V (GTg),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">144E</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . syn268I (ATc),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn460A (GCa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn530V</span></b> (<b><span style="color: blue;">GTg</span></b>) <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489322"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana23_C1_<b><span style="color: #993300;">7F</span></b>_2013_11_04 (</div>
<div class="c">
. . . . . . . . A/Indiana/23/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489322" target="_blank">EPI489322</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151027" target="_blank">EPI_ISL_151027</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn406R (AGg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn460A (GCa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487732"></a><o:p></o:p></div>
<div class="c">
. . . . Utah10_C1_<b><span style="color: #993300;">14F</span></b>_2013_10_29<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Utah/10/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/487732" target="_blank">EPI487732</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150613" target="_blank">EPI_ISL_150613</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn178V (GTa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn326S (TCc),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489337"></a><o:p></o:p></div>
<div class="c">
. . . . Connecticut03_C1_<b><span style="color: #993300;">3M</span></b>_2013_10_28 (</div>
<div class="c">
. . . . . . . . A/Connecticut/03/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489337" target="_blank">EPI489337</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151032" target="_blank">EPI_ISL_151032</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (10 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">252A mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn460A (GCa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486613"></a><o:p></o:p></div>
<div class="c">
. . . . Colorado04_C1_19M_2013_10_25 (</div>
<div class="c">
. . . . . . . . A/Colorado/04/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486613" target="_blank">EPI486613</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150290" target="_blank">EPI_ISL_150290</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn58C (TGc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">163R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn320G (GGg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486619"></a><o:p></o:p></div>
<div class="c">
. . . . Kentucky07_<st1:stockticker>MXC</st1:stockticker>1_<b><span style="color: #993300;">4M</span></b>_2013_10_24
(</div>
<div class="c">
. . . . . . . . A/Kentucky/07/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486619" target="_blank">EPI486619</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150292" target="_blank">EPI_ISL_150292</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (9 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn33V (GTc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn195Y</span></b> (<b><span style="color: blue;">TAc</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275A</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn339F (TTt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489358"></a><o:p></o:p></div>
<div class="c">
. . . . California25_C1_<b><span style="color: #993300;">11M</span></b>_2013_10_23 (</div>
<div class="c">
. . . . . . . . A/California/25/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489358" target="_blank">EPI489358</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151039" target="_blank">EPI_ISL_151039</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (8 Amino and 19 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R</span></b> (<b><span style="color: blue;">AGa</span></b>),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . syn158G (GGg),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn221P</span></b> (<b><span style="color: blue;">CCt</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn325P</span></b> (<b><span style="color: blue;">CCa</span></b>),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn417G</span></b> (<b><span style="color: blue;">GGc</span></b>),</div>
<div class="c">
. . . . . . . . syn429L (cTG),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn456L (TTg),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486644"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana11_C1_27F_2013_10_23 (</div>
<div class="c">
. . . . . . . . A/Louisiana/11/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486644" target="_blank">EPI486644</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150297" target="_blank">EPI_ISL_150297</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487738"></a><o:p></o:p></div>
<div class="c">
. . . . NorthDakota03_M1C1_58F_2013_10_22 (</div>
<div class="c">
. . . . . . . . A/North Dakota/03/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/487738" target="_blank">EPI487738</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150615" target="_blank">EPI_ISL_150615</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (8 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI489352"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi10_C1_29M_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Mississippi/10/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489352" target="_blank">EPI489352</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151037" target="_blank">EPI_ISL_151037</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (8 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn12A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn383N (AAc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn441H (CAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn528V (GTg),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489343"></a><o:p></o:p></div>
<div class="c">
. . . . Arkansas16_C1_27F_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Arkansas/16/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489343" target="_blank">EPI489343</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151034" target="_blank">EPI_ISL_151034</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (11 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">3T</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">w</span></b>t,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn5T</span></b> (<b><span style="color: blue;">ACt</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn318A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N</span></b> (<b><span style="color: blue;">AAc</span></b>),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">477M</span></b>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc),</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489340"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi10_<b><span style="color: #993300;">E3</span></b>_29M_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Mississippi/10/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489340" target="_blank">EPI489340</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151033" target="_blank">EPI_ISL_151033</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (9 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn12A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn122K</span></b> (<b><span style="color: blue;">AAa</span></b>),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N</span></b> (<b><span style="color: blue;">AAc</span></b>),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn441H (CAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn528V (GTg),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486652"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana10_C1_25F_2013_10_21<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/10/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486652" target="_blank">EPI486652</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150298" target="_blank">EPI_ISL_150298</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486622"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin15_M1C1_46M_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Wisconsin/15/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486622" target="_blank">EPI486622</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150293" target="_blank">EPI_ISL_150293</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (9 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn12A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">22I</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn122K</span></b> (<b><span style="color: blue;">AAa</span></b>),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N</span></b> (<b><span style="color: blue;">AAc</span></b>),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486604"></a><o:p></o:p></div>
<div class="c">
. . . . Florida41_C1_<b><span style="color: #993300;">6F</span></b>_2013_10_16 (</div>
<div class="c">
. . . . . . . . A/Florida/41/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486604" target="_blank">EPI486604</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150287" target="_blank">EPI_ISL_150287</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (11 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn268I</span></b> (<b><span style="color: blue;">ATc</span></b>),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385I</span></b>,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">452A</span></b>,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn460A (GCa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486616"></a><o:p></o:p></div>
<div class="c">
. . . . Illinois04_<st1:stockticker>MXC</st1:stockticker>1_47x_2013_10_15
(</div>
<div class="c">
. . . . . . . . A/Illinois/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">48K</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486616" target="_blank">EPI486616</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150291" target="_blank">EPI_ISL_150291</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (9 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn18T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48K</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486601"></a><o:p></o:p></div>
<div class="c">
. . . . NorthDakota04_M1C1_40M_2013_10_15 (</div>
<div class="c">
. . . . . . . . A/North Dakota/04/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486601" target="_blank">EPI486601</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150286" target="_blank">EPI_ISL_150286</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (8 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn167S (TCa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489349"></a><o:p></o:p></div>
<div class="c">
. . . . Alaska08_M1C1_<b><span style="color: #993300;">8F</span></b>_2013_10_14 (</div>
<div class="c">
. . . . . . . . A/Alaska/08/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489349" target="_blank">EPI489349</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151036" target="_blank">EPI_ISL_151036</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn507K (AAa),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489346"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi09_C1_<b><span style="color: #993300;">10M</span></b>_2013_10_12 (</div>
<div class="c">
. . . . . . . . A/Mississippi/09/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489346" target="_blank">EPI489346</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151035" target="_blank">EPI_ISL_151035</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI489328"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi09_<b><span style="color: #993300;">E3</span></b>_<b><span style="color: #993300;">10M</span></b>_2013_10_12 (</div>
<div class="c">
. . . . . . . . A/Mississippi/09/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489328" target="_blank">EPI489328</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151029" target="_blank">EPI_ISL_151029</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486610"></a><o:p></o:p></div>
<div class="c">
. . . . Georgia05_M1C1_2013_10_10 (</div>
<div class="c">
. . . . . . . . A/Georgia/05/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">48K</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486610" target="_blank">EPI486610</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150289" target="_blank">EPI_ISL_150289</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48K</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486607"></a><o:p></o:p></div>
<div class="c">
. . . . SouthCarolina04_X1C1_43F_2013_10_10 (</div>
<div class="c">
. . . . . . . . A/South Carolina/04/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486607" target="_blank">EPI486607</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150288" target="_blank">EPI_ISL_150288</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn2N (AAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">77G</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn134G (GGg),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn470F (TTc),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486636"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana12_C1_<b><span style="color: #993300;">13F</span></b>_2013_10_09 (</div>
<div class="c">
. . . . . . . . A/Louisiana/12/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486636" target="_blank">EPI486636</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150296" target="_blank">EPI_ISL_150296</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489334"></a><o:p></o:p></div>
<div class="c">
. . . . Florida43_C1_42M_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Florida/43/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489334" target="_blank">EPI489334</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151031" target="_blank">EPI_ISL_151031</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn460A (GCa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489331"></a><o:p></o:p></div>
<div class="c">
. . . . Florida43_<b><span style="color: #993300;">E3</span></b>_42M_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Florida/43/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489331" target="_blank">EPI489331</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151030" target="_blank">EPI_ISL_151030</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (11 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">194I</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn460A (GCa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487741"></a><o:p></o:p></div>
<div class="c">
. . . . SouthDakota02_M1C1_<b><span style="color: #993300;">1M</span></b>_2013_10_03 (</div>
<div class="c">
. . . . . . . . A/South Dakota/02/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/487741" target="_blank">EPI487741</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150616" target="_blank">EPI_ISL_150616</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275A</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn419L</span></b> (<b><span style="color: blue;">CTa</span></b>),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486598"></a><o:p></o:p></div>
<div class="c">
. . . . Florida42_C1_<b><span style="color: #993300;">1x</span></b>_2013_09_26 (</div>
<div class="c">
. . . . . . . . A/Florida/42/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486598" target="_blank">EPI486598</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150285" target="_blank">EPI_ISL_150285</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G</span></b> (<b><span style="color: blue;">GGa</span></b>),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487735"></a><o:p></o:p></div>
<div class="c">
. . . . Florida40_C2_36F_2013_09_22 (</div>
<div class="c">
. . . . . . . . A/Florida/40/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/487735" target="_blank">EPI487735</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150614" target="_blank">EPI_ISL_150614</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (8 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487724"></a><o:p></o:p></div>
<div class="c">
. . . . SouthCarolina03_X1C2_<b><span style="color: #993300;">11F</span></b>_2013_09_21<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/South Carolina/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Vaccine Escape</span></b>: GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">ComplexCodon</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">159K</span></b> & <b><span style="color: blue;">159Q</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/487724" target="_blank">EPI487724</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150612" target="_blank">EPI_ISL_150612</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (12 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">159K mix</span></b> [<b><span style="color: maroon;">ComplexCodon</span></b> <b><span style="color: blue;">mAa</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">159Q mix</span></b> [<b><span style="color: maroon;">ComplexCodon</span></b> <b><span style="color: blue;">mAa</span></b>],</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275A</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn363G (GGg) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn419L</span></b> (<b><span style="color: blue;">CTa</span></b>),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486628"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong5008_CXC1_<b><span style="color: #993300;">3F</span></b>_2013_09_19 (</div>
<div class="c">
. . . . . . . . A/Hong Kong/5008/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">ComplexCodon</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">286D</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486628" target="_blank">EPI486628</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150295" target="_blank">EPI_ISL_150295</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn17D (GAt)</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn92T (ACa),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn123T (ACg),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">144V</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">286D </span></b>[<b><span style="color: #993300;">ComplexCodon</span></b> <b><span style="color: blue;">gAt</span></b>],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn320G (GGg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486625"></a><o:p></o:p></div>
<div class="c">
. . . . India1968_E1E2_50F_2013_07_26 (</div>
<div class="c">
. . . . . . . . A/India/1968/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486625" target="_blank">EPI486625</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150294" target="_blank">EPI_ISL_150294</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#1T</span></b>,</div>
<div class="c">
. . . . . . . . syn44L (CTg),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn518A (GCa),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
</div>
</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI489354"></a><o:p></o:p></div>
<div class="c">
. . . . Montana04_C1_46M_2013_11_06 (</div>
<div class="c">
. . . . . . . . A/Montana/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489354" target="_blank">EPI489354</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151038" target="_blank">EPI_ISL_151038</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489324"></a><o:p></o:p></div>
<div class="c">
. . . . Nebraska08_C1_38F_2013_11_05 (</div>
<div class="c">
. . . . . . . . A/Nebraska/08/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489324" target="_blank">EPI489324</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151028" target="_blank">EPI_ISL_151028</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (9 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn337P (CCg),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489321"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana23_C1_<b><span style="color: #993300;">7F</span></b>_2013_11_04 (</div>
<div class="c">
. . . . . . . . A/Indiana/23/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489321" target="_blank">EPI489321</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151027" target="_blank">EPI_ISL_151027</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487731"></a><o:p></o:p></div>
<div class="c">
. . . . Utah10_C1_<b><span style="color: #993300;">14F</span></b>_2013_10_29<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Utah/10/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/487731" target="_blank">EPI487731</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150613" target="_blank">EPI_ISL_150613</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (12 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue; font-size: x-large;">275Y mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">394I</span></b>,</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489336"></a><o:p></o:p></div>
<div class="c">
. . . . Connecticut03_C1_<b><span style="color: #993300;">3M</span></b>_2013_10_28 (</div>
<div class="c">
. . . . . . . . A/Connecticut/03/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489336" target="_blank">EPI489336</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151032" target="_blank">EPI_ISL_151032</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 272T,</div>
<div class="c">
. . . . . . . . syn302P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . 466I)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486612"></a><o:p></o:p></div>
<div class="c">
. . . . Colorado04_C1_19M_2013_10_25 (</div>
<div class="c">
. . . . . . . . A/Colorado/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486612" target="_blank">EPI486612</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150290" target="_blank">EPI_ISL_150290</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (9 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn352K (AAg),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486618"></a><o:p></o:p></div>
<div class="c">
. . . . Kentucky07_<st1:stockticker>MXC</st1:stockticker>1_<b><span style="color: #993300;">4M</span></b>_2013_10_24
(</div>
<div class="c">
. . . . . . . . A/Kentucky/07/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486618" target="_blank">EPI486618</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150292" target="_blank">EPI_ISL_150292</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489357"></a><o:p></o:p></div>
<div class="c">
. . . . California25_C1_<b><span style="color: #993300;">11M</span></b>_2013_10_23 (</div>
<div class="c">
. . . . . . . . A/California/25/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489357" target="_blank">EPI489357</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151039" target="_blank">EPI_ISL_151039</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (9 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 40I,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn125S (TCt),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn220R (AGg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn383T (ACt),</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486643"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana11_C1_27F_2013_10_23 (</div>
<div class="c">
. . . . . . . . A/Louisiana/11/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486643" target="_blank">EPI486643</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150297" target="_blank">EPI_ISL_150297</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn315G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 381N,</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487737"></a><o:p></o:p></div>
<div class="c">
. . . . NorthDakota03_M1C1_58F_2013_10_22 (</div>
<div class="c">
. . . . . . . . A/North Dakota/03/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/487737" target="_blank">EPI487737</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150615" target="_blank">EPI_ISL_150615</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (10 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 247G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489351"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi10_C1_29M_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Mississippi/10/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489351" target="_blank">EPI489351</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151037" target="_blank">EPI_ISL_151037</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40V</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn46I (ATc),</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">108V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489342"></a><o:p></o:p></div>
<div class="c">
. . . . Arkansas16_C1_27F_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Arkansas/16/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489342" target="_blank">EPI489342</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151034" target="_blank">EPI_ISL_151034</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (11 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . syn35S (AGt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn131T (ACt),</div>
<div class="c">
. . . . . . . . syn175E (GAa),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">449K</span></b>)</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI489339"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi10_<b><span style="color: #993300;">E3</span></b>_29M_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Mississippi/10/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489339" target="_blank">EPI489339</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151033" target="_blank">EPI_ISL_151033</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40V</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn46I (ATc),</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">108V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486651"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana10_C1_25F_2013_10_21<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/10/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486651" target="_blank">EPI486651</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150298" target="_blank">EPI_ISL_150298</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (11 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <span style="color: blue; font-size: x-large;"><b>275Y</b></span>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486621"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin15_M1C1_46M_2013_10_21 (</div>
<div class="c">
. . . . . . . . A/Wisconsin/15/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486621" target="_blank">EPI486621</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150293" target="_blank">EPI_ISL_150293</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (10 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40V</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn46I (ATc),</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">108V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">286G</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486603"></a><o:p></o:p></div>
<div class="c">
. . . . Florida41_C1_<b><span style="color: #993300;">6F</span></b>_2013_10_16 (</div>
<div class="c">
. . . . . . . . A/Florida/41/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486603" target="_blank">EPI486603</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150287" target="_blank">EPI_ISL_150287</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486615"></a><o:p></o:p></div>
<div class="c">
. . . . Illinois04_<st1:stockticker>MXC</st1:stockticker>1_47x_2013_10_15
(</div>
<div class="c">
. . . . . . . . A/Illinois/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486615" target="_blank">EPI486615</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150291" target="_blank">EPI_ISL_150291</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (13 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 67I,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn307N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . 443V,</div>
<div class="c">
. . . . . . . . 466I)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486600"></a><o:p></o:p></div>
<div class="c">
. . . . NorthDakota04_M1C1_40M_2013_10_15 (</div>
<div class="c">
. . . . . . . . A/North Dakota/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486600" target="_blank">EPI486600</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150286" target="_blank">EPI_ISL_150286</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (10 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 424I,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489348"></a><o:p></o:p></div>
<div class="c">
. . . . Alaska08_M1C1_<b><span style="color: #993300;">8F</span></b>_2013_10_14 (</div>
<div class="c">
. . . . . . . . A/Alaska/08/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489348" target="_blank">EPI489348</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151036" target="_blank">EPI_ISL_151036</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 72I,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn143K (AAg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . syn453V (GTa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489345"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi09_<b><span style="color: #993300;">C1</span></b>_<b><span style="color: #993300;">10M</span></b>_2013_10_12 (</div>
<div class="c">
. . . . . . . . A/Mississippi/09/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489345" target="_blank">EPI489345</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151035" target="_blank">EPI_ISL_151035</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn135T (ACc),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn331K (AAa),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489327"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi09_<b><span style="color: #993300;">E3</span></b>_<b><span style="color: #993300;">10M</span></b>_2013_10_12 (</div>
<div class="c">
. . . . . . . . A/Mississippi/09/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489327" target="_blank">EPI489327</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151029" target="_blank">EPI_ISL_151029</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn135T (ACc),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn331K (AAa),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486609"></a><o:p></o:p></div>
<div class="c">
. . . . Georgia05_M1C1_2013_10_10 (</div>
<div class="c">
. . . . . . . . A/Georgia/05/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">48K</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486609" target="_blank">EPI486609</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150289" target="_blank">EPI_ISL_150289</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (13 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">67I</span></b>,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn307N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">443V</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">466I</span></b>)</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI486606"></a><o:p></o:p></div>
<div class="c">
. . . . SouthCarolina04_X1C1_43F_2013_10_10 (</div>
<div class="c">
. . . . . . . . A/South Carolina/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486606" target="_blank">EPI486606</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150288" target="_blank">EPI_ISL_150288</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486635"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana12_C1_<b><span style="color: #993300;">13F</span></b>_2013_10_09 (</div>
<div class="c">
. . . . . . . . A/Louisiana/12/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486635" target="_blank">EPI486635</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150296" target="_blank">EPI_ISL_150296</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn315G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 381N,</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489333"></a><o:p></o:p></div>
<div class="c">
. . . . Florida43_C1_42M_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Florida/43/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489333" target="_blank">EPI489333</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151031" target="_blank">EPI_ISL_151031</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (10 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 149V,</div>
<div class="c">
. . . . . . . . syn173R (AGg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489330"></a><o:p></o:p></div>
<div class="c">
. . . . Florida43_E3_42M_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Florida/43/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/489330" target="_blank">EPI489330</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151030" target="_blank">EPI_ISL_151030</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (9 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn173R (AGg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487740"></a><o:p></o:p></div>
<div class="c">
. . . . SouthDakota02_M1C1_<b><span style="color: #993300;">1M</span></b>_2013_10_03 (</div>
<div class="c">
. . . . . . . . A/South Dakota/02/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/487740" target="_blank">EPI487740</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150616" target="_blank">EPI_ISL_150616</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn182S (AGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">199N</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 305T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . 451G)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486597"></a><o:p></o:p></div>
<div class="c">
. . . . Florida42_C1_<b><span style="color: #993300;">1x</span></b>_2013_09_26 (</div>
<div class="c">
. . . . . . . . A/Florida/42/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486597" target="_blank">EPI486597</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150285" target="_blank">EPI_ISL_150285</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (12 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 45H,</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . 434K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487734"></a><o:p></o:p></div>
<div class="c">
. . . . Florida40_C2_36F_2013_09_22 (</div>
<div class="c">
. . . . . . . . A/Florida/40/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/487734" target="_blank">EPI487734</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150614" target="_blank">EPI_ISL_150614</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (12 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">199N</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">211V</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI487723"></a><o:p></o:p></div>
<div class="c">
. . . . SouthCarolina03_X1C2_<b><span style="color: #993300;">11F</span></b>_2013_09_21<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/South Carolina/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Vaccine Escape</span></b>: GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">ComplexCodon</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">159K</span></b> & <b><span style="color: blue;">159Q</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/487723" target="_blank">EPI487723</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150612" target="_blank">EPI_ISL_150612</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn182S (AGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">199N</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">305T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . 451G)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486627"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong5008_CXC1_<b><span style="color: #993300;">3F</span></b>_2013_09_19 (</div>
<div class="c">
. . . . . . . . A/Hong Kong/5008/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">ComplexCodon</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">286D</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486627" target="_blank">EPI486627</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150295" target="_blank">EPI_ISL_150295</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (10 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn115F (TTc),</div>
<div class="c">
. . . . . . . . syn162P (CCc),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn295N (AAt),</div>
<div class="c">
. . . . . . . . 309H,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn421C (TGt),</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486624"></a><o:p></o:p></div>
<div class="c">
. . . . India1968_E1E2_50F_2013_07_26 (</div>
<div class="c">
. . . . . . . . A/India/1968/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486624" target="_blank">EPI486624</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150294" target="_blank">EPI_ISL_150294</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (8 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn262K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 432E)<br />
<br /></div>
</div>
</div>
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PB2</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI487729"></a><o:p></o:p></div>
<div class="c">
. . . . Utah10_C1_<b><span style="color: #993300;">14F</span></b>_2013_10_29<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Utah/10/2013</div>
<div class="c">
. . . . . . . . GISAID PB2 <a href="http://gisaid.org/EPI/487729" target="_blank">EPI487729</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150613" target="_blank">EPI_ISL_150613</a></div>
<div class="c">
. . . . . . . . 30 Polymorphisms (8 Amino and 22 Silent)</div>
<div class="c">
. . . . . . . . 54K,</div>
<div class="c">
. . . . . . . . 66I,</div>
<div class="c">
. . . . . . . . syn107S (AGc),</div>
<div class="c">
. . . . . . . . 155S,</div>
<div class="c">
. . . . . . . . 195N,</div>
<div class="c">
. . . . . . . . syn219P (CCg),</div>
<div class="c">
. . . . . . . . syn222G (GGt),</div>
<div class="c">
. . . . . . . . syn223G (GGg),</div>
<div class="c">
. . . . . . . . syn258S (AGc),</div>
<div class="c">
. . . . . . . . syn291G (GGt),</div>
<div class="c">
. . . . . . . . syn292V (GTg),</div>
<div class="c">
. . . . . . . . 293K,</div>
<div class="c">
. . . . . . . . syn319I (ATc),</div>
<div class="c">
. . . . . . . . 344M,</div>
<div class="c">
. . . . . . . . syn348N (AAt),</div>
<div class="c">
. . . . . . . . 354L,</div>
<div class="c">
. . . . . . . . syn383Q (CAa),</div>
<div class="c">
. . . . . . . . syn384L (TTa),</div>
<div class="c">
. . . . . . . . syn396E (GAa),</div>
<div class="c">
. . . . . . . . syn427R (aGA),</div>
<div class="c">
. . . . . . . . syn430P (CCt),</div>
<div class="c">
. . . . . . . . syn440K (AAg),</div>
<div class="c">
. . . . . . . . syn482K (AAg),</div>
<div class="c">
. . . . . . . . syn502L (TTg),</div>
<div class="c">
. . . . . . . . syn555R (AGa),</div>
<div class="c">
. . . . . . . . syn573N (AAt),</div>
<div class="c">
. . . . . . . . syn634S (TCt),</div>
<div class="c">
. . . . . . . . syn697L (TTa),</div>
<div class="c">
. . . . . . . . syn728Q (CAg),</div>
<div class="c">
. . . . . . . . 731I)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486641"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana11_C1_27F_2013_10_23 (</div>
<div class="c">
. . . . . . . . A/Louisiana/11/2013</div>
<div class="c">
. . . . . . . . GISAID PB2 <a href="http://gisaid.org/EPI/486641" target="_blank">EPI486641</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150297" target="_blank">EPI_ISL_150297</a></div>
<div class="c">
. . . . . . . . 30 Polymorphisms (8 Amino and 22 Silent)</div>
<div class="c">
. . . . . . . . 54K,</div>
<div class="c">
. . . . . . . . 66I,</div>
<div class="c">
. . . . . . . . syn107S (AGc),</div>
<div class="c">
. . . . . . . . 155S,</div>
<div class="c">
. . . . . . . . 195N,</div>
<div class="c">
. . . . . . . . syn219P (CCg),</div>
<div class="c">
. . . . . . . . syn222G (GGt),</div>
<div class="c">
. . . . . . . . syn223G (GGg),</div>
<div class="c">
. . . . . . . . syn258S (AGc),</div>
<div class="c">
. . . . . . . . syn291G (GGt),</div>
<div class="c">
. . . . . . . . syn292V (GTg),</div>
<div class="c">
. . . . . . . . 293K,</div>
<div class="c">
. . . . . . . . syn319I (ATc),</div>
<div class="c">
. . . . . . . . 344M,</div>
<div class="c">
. . . . . . . . syn348N (AAt),</div>
<div class="c">
. . . . . . . . 354L,</div>
<div class="c">
. . . . . . . . syn383Q (CAa),</div>
<div class="c">
. . . . . . . . syn384L (TTa),</div>
<div class="c">
. . . . . . . . syn396E (GAa),</div>
<div class="c">
. . . . . . . . syn427R (aGA),</div>
<div class="c">
. . . . . . . . syn430P (CCt),</div>
<div class="c">
. . . . . . . . syn440K (AAg),</div>
<div class="c">
. . . . . . . . syn482K (AAg),</div>
<div class="c">
. . . . . . . . syn502L (TTg),</div>
<div class="c">
. . . . . . . . syn555R (AGa),</div>
<div class="c">
. . . . . . . . syn573N (AAt),</div>
<div class="c">
. . . . . . . . syn634S (TCt),</div>
<div class="c">
. . . . . . . . syn697L (TTa),</div>
<div class="c">
. . . . . . . . syn728Q (CAg),</div>
<div class="c">
. . . . . . . . 731I)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486649"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana10_C1_25F_2013_10_21<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/10/2013</div>
<div class="c">
. . . . . . . . GISAID PB2 <a href="http://gisaid.org/EPI/486649" target="_blank">EPI486649</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150298" target="_blank">EPI_ISL_150298</a></div>
<div class="c">
. . . . . . . . 31 Polymorphisms (9 Amino and 22 Silent)</div>
<div class="c">
. . . . . . . . 54K,</div>
<div class="c">
. . . . . . . . 66I,</div>
<div class="c">
. . . . . . . . syn107S (AGc),</div>
<div class="c">
. . . . . . . . 155S,</div>
<div class="c">
. . . . . . . . 195N,</div>
<div class="c">
. . . . . . . . syn219P (CCg),</div>
<div class="c">
. . . . . . . . syn222G (GGt),</div>
<div class="c">
. . . . . . . . syn223G (GGg),</div>
<div class="c">
. . . . . . . . syn258S (AGc),</div>
<div class="c">
. . . . . . . . syn291G (GGt),</div>
<div class="c">
. . . . . . . . syn292V (GTg),</div>
<div class="c">
. . . . . . . . 293K,</div>
<div class="c">
. . . . . . . . syn319I (ATc),</div>
<div class="c">
. . . . . . . . 344M,</div>
<div class="c">
. . . . . . . . syn348N (AAt),</div>
<div class="c">
. . . . . . . . 354L,</div>
<div class="c">
. . . . . . . . syn383Q (CAa),</div>
<div class="c">
. . . . . . . . syn384L (TTa),</div>
<div class="c">
. . . . . . . . syn396E (GAa),</div>
<div class="c">
. . . . . . . . syn427R (aGA),</div>
<div class="c">
. . . . . . . . syn430P (CCt),</div>
<div class="c">
. . . . . . . . syn440K (AAg),</div>
<div class="c">
. . . . . . . . syn482K (AAg),</div>
<div class="c">
. . . . . . . . syn502L (TTg),</div>
<div class="c">
. . . . . . . . 524N,</div>
<div class="c">
. . . . . . . . syn555R (AGa),</div>
<div class="c">
. . . . . . . . syn573N (AAt),</div>
<div class="c">
. . . . . . . . syn634S (TCt),</div>
<div class="c">
. . . . . . . . syn697L (TTa),</div>
<div class="c">
. . . . . . . . syn728Q (CAg),</div>
<div class="c">
. . . . . . . . 731I)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486633"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana12_C1_<b><span style="color: #993300;">13F</span></b>_2013_10_09 (</div>
<div class="c">
. . . . . . . . A/Louisiana/12/2013</div>
<div class="c">
. . . . . . . . GISAID PB2 <a href="http://gisaid.org/EPI/486633" target="_blank">EPI486633</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150296" target="_blank">EPI_ISL_150296</a></div>
<div class="c">
. . . . . . . . 30 Polymorphisms (8 Amino and 22 Silent)</div>
<div class="c">
. . . . . . . . 54K,</div>
<div class="c">
. . . . . . . . 66I,</div>
<div class="c">
. . . . . . . . syn107S (AGc),</div>
<div class="c">
. . . . . . . . 155S,</div>
<div class="c">
. . . . . . . . 195N,</div>
<div class="c">
. . . . . . . . syn219P (CCg),</div>
<div class="c">
. . . . . . . . syn222G (GGt),</div>
<div class="c">
. . . . . . . . syn223G (GGg),</div>
<div class="c">
. . . . . . . . syn258S (AGc),</div>
<div class="c">
. . . . . . . . syn291G (GGt),</div>
<div class="c">
. . . . . . . . syn292V (GTg),</div>
<div class="c">
. . . . . . . . 293K,</div>
<div class="c">
. . . . . . . . syn319I (ATc),</div>
<div class="c">
. . . . . . . . 344M,</div>
<div class="c">
. . . . . . . . syn348N (AAt),</div>
<div class="c">
. . . . . . . . 354L,</div>
<div class="c">
. . . . . . . . syn383Q (CAa),</div>
<div class="c">
. . . . . . . . syn384L (TTa),</div>
<div class="c">
. . . . . . . . syn396E (GAa),</div>
<div class="c">
. . . . . . . . syn427R (aGA),</div>
<div class="c">
. . . . . . . . syn430P (CCt),</div>
<div class="c">
. . . . . . . . syn440K (AAg),</div>
<div class="c">
. . . . . . . . syn482K (AAg),</div>
<div class="c">
. . . . . . . . syn502L (TTg),</div>
<div class="c">
. . . . . . . . syn555R (AGa),</div>
<div class="c">
. . . . . . . . syn573N (AAt),</div>
<div class="c">
. . . . . . . . syn634S (TCt),</div>
<div class="c">
. . . . . . . . syn697L (TTa),</div>
<div class="c">
. . . . . . . . syn728Q (CAg),</div>
<div class="c">
. . . . . . . . 731I)</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PB1</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI487730"></a><o:p></o:p></div>
<div class="c">
. . . . Utah10_C1_<b><span style="color: #993300;">14F</span></b>_2013_10_29<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Utah/10/2013</div>
<div class="c">
. . . . . . . . GISAID PB1 <a href="http://gisaid.org/EPI/487730" target="_blank">EPI487730</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150613" target="_blank">EPI_ISL_150613</a></div>
<div class="c">
. . . . . . . . 29 Polymorphisms (4 Amino and 25 Silent)</div>
<div class="c">
. . . . . . . . syn14A (GCa),</div>
<div class="c">
. . . . . . . . syn53G (GGg),</div>
<div class="c">
. . . . . . . . syn56T (ACa),</div>
<div class="c">
. . . . . . . . syn105N (AAt),</div>
<div class="c">
. . . . . . . . 113I,</div>
<div class="c">
. . . . . . . . syn122L (CTg),</div>
<div class="c">
. . . . . . . . 154D,</div>
<div class="c">
. . . . . . . . syn158N (AAc),</div>
<div class="c">
. . . . . . . . syn201T (ACt),</div>
<div class="c">
. . . . . . . . syn210Q (CAg),</div>
<div class="c">
. . . . . . . . syn235K (AAa),</div>
<div class="c">
. . . . . . . . syn282L (tTa),</div>
<div class="c">
. . . . . . . . syn292N (AAc),</div>
<div class="c">
. . . . . . . . syn295D (GAt),</div>
<div class="c">
. . . . . . . . syn333F (TTt),</div>
<div class="c">
. . . . . . . . syn346N (AAt),</div>
<div class="c">
. . . . . . . . syn377D (GAt),</div>
<div class="c">
. . . . . . . . syn396L (tTA),</div>
<div class="c">
. . . . . . . . 397M,</div>
<div class="c">
. . . . . . . . 435T,</div>
<div class="c">
. . . . . . . . syn457E (GAa),</div>
<div class="c">
. . . . . . . . syn539L (CTc),</div>
<div class="c">
. . . . . . . . syn573S (TCa),</div>
<div class="c">
. . . . . . . . syn579L (CTa),</div>
<div class="c">
. . . . . . . . syn600N (AAc),</div>
<div class="c">
. . . . . . . . syn632V (GTg),</div>
<div class="c">
. . . . . . . . syn635K (AAg),</div>
<div class="c">
. . . . . . . . syn692C (TGt),</div>
<div class="c">
. . . . . . . . syn730F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486642"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana11_C1_27F_2013_10_23 (</div>
<div class="c">
. . . . . . . . A/Louisiana/11/2013</div>
<div class="c">
. . . . . . . . GISAID PB1 <a href="http://gisaid.org/EPI/486642" target="_blank">EPI486642</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150297" target="_blank">EPI_ISL_150297</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (4 Amino and 23 Silent)</div>
<div class="c">
. . . . . . . . syn14A (GCa),</div>
<div class="c">
. . . . . . . . syn53G (GGg),</div>
<div class="c">
. . . . . . . . syn56T (ACa),</div>
<div class="c">
. . . . . . . . syn105N (AAt),</div>
<div class="c">
. . . . . . . . 113I,</div>
<div class="c">
. . . . . . . . syn122L (CTg),</div>
<div class="c">
. . . . . . . . 154D,</div>
<div class="c">
. . . . . . . . syn158N (AAc),</div>
<div class="c">
. . . . . . . . syn201T (ACt),</div>
<div class="c">
. . . . . . . . syn210Q (CAg),</div>
<div class="c">
. . . . . . . . syn282L (tTG),</div>
<div class="c">
. . . . . . . . syn295D (GAt),</div>
<div class="c">
. . . . . . . . syn333F (TTt),</div>
<div class="c">
. . . . . . . . syn346N (AAt),</div>
<div class="c">
. . . . . . . . syn377D (GAt),</div>
<div class="c">
. . . . . . . . syn396L (tTA),</div>
<div class="c">
. . . . . . . . 397M,</div>
<div class="c">
. . . . . . . . 435T,</div>
<div class="c">
. . . . . . . . syn457E (GAa),</div>
<div class="c">
. . . . . . . . syn539L (CTc),</div>
<div class="c">
. . . . . . . . syn573S (TCa),</div>
<div class="c">
. . . . . . . . syn579L (CTa),</div>
<div class="c">
. . . . . . . . syn600N (AAc),</div>
<div class="c">
. . . . . . . . syn632V (GTg),</div>
<div class="c">
. . . . . . . . syn635K (AAg),</div>
<div class="c">
. . . . . . . . syn692C (TGt),</div>
<div class="c">
. . . . . . . . syn730F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486650"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana10_C1_25F_2013_10_21<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/10/2013</div>
<div class="c">
. . . . . . . . GISAID PB1 <a href="http://gisaid.org/EPI/486650" target="_blank">EPI486650</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150298" target="_blank">EPI_ISL_150298</a></div>
<div class="c">
. . . . . . . . 29 Polymorphisms (5 Amino and 24 Silent)</div>
<div class="c">
. . . . . . . . syn14A (GCa),</div>
<div class="c">
. . . . . . . . syn53G (GGg),</div>
<div class="c">
. . . . . . . . syn56T (ACa),</div>
<div class="c">
. . . . . . . . syn105N (AAt),</div>
<div class="c">
. . . . . . . . 113I,</div>
<div class="c">
. . . . . . . . syn122L (CTg),</div>
<div class="c">
. . . . . . . . 154D,</div>
<div class="c">
. . . . . . . . syn158N (AAc),</div>
<div class="c">
. . . . . . . . syn201T (ACt),</div>
<div class="c">
. . . . . . . . syn210Q (CAg),</div>
<div class="c">
. . . . . . . . syn282L (tTG),</div>
<div class="c">
. . . . . . . . syn295D (GAt),</div>
<div class="c">
. . . . . . . . syn333F (TTt),</div>
<div class="c">
. . . . . . . . syn346N (AAt),</div>
<div class="c">
. . . . . . . . 363R,</div>
<div class="c">
. . . . . . . . syn377D (GAt),</div>
<div class="c">
. . . . . . . . syn396L (tTA),</div>
<div class="c">
. . . . . . . . 397M,</div>
<div class="c">
. . . . . . . . 435T,</div>
<div class="c">
. . . . . . . . syn457E (GAa),</div>
<div class="c">
. . . . . . . . syn539L (CTc),</div>
<div class="c">
. . . . . . . . syn550L (TTa),</div>
<div class="c">
. . . . . . . . syn573S (TCa),</div>
<div class="c">
. . . . . . . . syn579L (CTa),</div>
<div class="c">
. . . . . . . . syn600N (AAc),</div>
<div class="c">
. . . . . . . . syn632V (GTg),</div>
<div class="c">
. . . . . . . . syn635K (AAg),</div>
<div class="c">
. . . . . . . . syn692C (TGt),</div>
<div class="c">
. . . . . . . . syn730F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486634"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana12_C1_<b><span style="color: #993300;">13F</span></b>_2013_10_09 (</div>
<div class="c">
. . . . . . . . A/Louisiana/12/2013</div>
<div class="c">
. . . . . . . . GISAID PB1 <a href="http://gisaid.org/EPI/486634" target="_blank">EPI486634</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150296" target="_blank">EPI_ISL_150296</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (4 Amino and 23 Silent)</div>
<div class="c">
. . . . . . . . syn14A (GCa),</div>
<div class="c">
. . . . . . . . syn53G (GGg),</div>
<div class="c">
. . . . . . . . syn56T (ACa),</div>
<div class="c">
. . . . . . . . syn105N (AAt),</div>
<div class="c">
. . . . . . . . 113I,</div>
<div class="c">
. . . . . . . . syn122L (CTg),</div>
<div class="c">
. . . . . . . . 154D,</div>
<div class="c">
. . . . . . . . syn158N (AAc),</div>
<div class="c">
. . . . . . . . syn201T (ACt),</div>
<div class="c">
. . . . . . . . syn210Q (CAg),</div>
<div class="c">
. . . . . . . . syn282L (tTG),</div>
<div class="c">
. . . . . . . . syn295D (GAt),</div>
<div class="c">
. . . . . . . . syn333F (TTt),</div>
<div class="c">
. . . . . . . . syn346N (AAt),</div>
<div class="c">
. . . . . . . . syn377D (GAt),</div>
<div class="c">
. . . . . . . . syn396L (tTA),</div>
<div class="c">
. . . . . . . . 397M,</div>
<div class="c">
. . . . . . . . 435T,</div>
<div class="c">
. . . . . . . . syn457E (GAa),</div>
<div class="c">
. . . . . . . . syn539L (CTc),</div>
<div class="c">
. . . . . . . . syn573S (TCa),</div>
<div class="c">
. . . . . . . . syn579L (CTa),</div>
<div class="c">
. . . . . . . . syn600N (AAc),</div>
<div class="c">
. . . . . . . . syn632V (GTg),</div>
<div class="c">
. . . . . . . . syn635K (AAg),</div>
<div class="c">
. . . . . . . . syn692C (TGt),</div>
<div class="c">
. . . . . . . . syn730F (TTt))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI487728"></a><o:p></o:p></div>
<div class="c">
. . . . Utah10_C1_<b><span style="color: #993300;">14F</span></b>_2013_10_29<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Utah/10/2013</div>
<div class="c">
. . . . . . . . GISAID PA <a href="http://gisaid.org/EPI/487728" target="_blank">EPI487728</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150613" target="_blank">EPI_ISL_150613</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (6 Amino and 19 Silent)</div>
<div class="c">
. . . . . . . . syn33N (AAt),</div>
<div class="c">
. . . . . . . . syn68P (CCa),</div>
<div class="c">
. . . . . . . . 100I,</div>
<div class="c">
. . . . . . . . syn123T (ACg),</div>
<div class="c">
. . . . . . . . syn168R (AGa),</div>
<div class="c">
. . . . . . . . syn221P (CCa),</div>
<div class="c">
. . . . . . . . syn229F (TTc),</div>
<div class="c">
. . . . . . . . 266H,</div>
<div class="c">
. . . . . . . . syn270L (TTa),</div>
<div class="c">
. . . . . . . . syn273G (GGa),</div>
<div class="c">
. . . . . . . . syn291S (AGc),</div>
<div class="c">
. . . . . . . . syn300E (GAa),</div>
<div class="c">
. . . . . . . . 321K,</div>
<div class="c">
. . . . . . . . 330V,</div>
<div class="c">
. . . . . . . . 361R,</div>
<div class="c">
. . . . . . . . 362K,</div>
<div class="c">
. . . . . . . . syn417L (TTa),</div>
<div class="c">
. . . . . . . . syn517V (GTa),</div>
<div class="c">
. . . . . . . . syn529D (GAt),</div>
<div class="c">
. . . . . . . . syn530P (CCa),</div>
<div class="c">
. . . . . . . . syn534P (CCa),</div>
<div class="c">
. . . . . . . . syn549L (CTa),</div>
<div class="c">
. . . . . . . . syn555G (GGt),</div>
<div class="c">
. . . . . . . . syn597E (GAa),</div>
<div class="c">
. . . . . . . . syn662S (TCa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486640"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana11_C1_27F_2013_10_23 (</div>
<div class="c">
. . . . . . . . A/Louisiana/11/2013</div>
<div class="c">
. . . . . . . . GISAID PA <a href="http://gisaid.org/EPI/486640" target="_blank">EPI486640</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150297" target="_blank">EPI_ISL_150297</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (6 Amino and 20 Silent)</div>
<div class="c">
. . . . . . . . syn33N (AAt),</div>
<div class="c">
. . . . . . . . syn68P (CCa),</div>
<div class="c">
. . . . . . . . 100I,</div>
<div class="c">
. . . . . . . . syn168R (AGa),</div>
<div class="c">
. . . . . . . . syn221P (CCa),</div>
<div class="c">
. . . . . . . . syn229F (TTc),</div>
<div class="c">
. . . . . . . . 266H,</div>
<div class="c">
. . . . . . . . syn270L (TTa),</div>
<div class="c">
. . . . . . . . syn273G (GGa),</div>
<div class="c">
. . . . . . . . syn291S (AGc),</div>
<div class="c">
. . . . . . . . syn300E (GAa),</div>
<div class="c">
. . . . . . . . 321K,</div>
<div class="c">
. . . . . . . . 330V,</div>
<div class="c">
. . . . . . . . 361R,</div>
<div class="c">
. . . . . . . . 362K,</div>
<div class="c">
. . . . . . . . syn417L (TTa),</div>
<div class="c">
. . . . . . . . syn418T (ACc),</div>
<div class="c">
. . . . . . . . syn517V (GTa),</div>
<div class="c">
. . . . . . . . syn529D (GAt),</div>
<div class="c">
. . . . . . . . syn530P (CCa),</div>
<div class="c">
. . . . . . . . syn534P (CCa),</div>
<div class="c">
. . . . . . . . syn549L (CTa),</div>
<div class="c">
. . . . . . . . syn555G (GGt),</div>
<div class="c">
. . . . . . . . syn556Q (CAg),</div>
<div class="c">
. . . . . . . . syn597E (GAa),</div>
<div class="c">
. . . . . . . . syn662S (TCa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486648"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana10_C1_25F_2013_10_21<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/10/2013</div>
<div class="c">
. . . . . . . . GISAID PA <a href="http://gisaid.org/EPI/486648" target="_blank">EPI486648</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150298" target="_blank">EPI_ISL_150298</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (7 Amino and 18 Silent)</div>
<div class="c">
. . . . . . . . syn33N (AAt),</div>
<div class="c">
. . . . . . . . syn68P (CCa),</div>
<div class="c">
. . . . . . . . 100I,</div>
<div class="c">
. . . . . . . . syn168R (AGa),</div>
<div class="c">
. . . . . . . . syn221P (CCa),</div>
<div class="c">
. . . . . . . . syn229F (TTc),</div>
<div class="c">
. . . . . . . . 266H,</div>
<div class="c">
. . . . . . . . syn270L (TTa),</div>
<div class="c">
. . . . . . . . syn273G (GGa),</div>
<div class="c">
. . . . . . . . syn291S (AGc),</div>
<div class="c">
. . . . . . . . syn300E (GAa),</div>
<div class="c">
. . . . . . . . 321K,</div>
<div class="c">
. . . . . . . . 330V,</div>
<div class="c">
. . . . . . . . 336T,</div>
<div class="c">
. . . . . . . . 361G,</div>
<div class="c">
. . . . . . . . 362K,</div>
<div class="c">
. . . . . . . . syn417L (TTa),</div>
<div class="c">
. . . . . . . . syn517V (GTa),</div>
<div class="c">
. . . . . . . . syn529D (GAt),</div>
<div class="c">
. . . . . . . . syn530P (CCa),</div>
<div class="c">
. . . . . . . . syn534P (CCa),</div>
<div class="c">
. . . . . . . . syn549L (CTa),</div>
<div class="c">
. . . . . . . . syn555G (GGt),</div>
<div class="c">
. . . . . . . . syn597E (GAa),</div>
<div class="c">
. . . . . . . . syn662S (TCa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486632"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana12_C1_<b><span style="color: #993300;">13F</span></b>_2013_10_09 (</div>
<div class="c">
. . . . . . . . A/Louisiana/12/2013</div>
<div class="c">
. . . . . . . . GISAID PA <a href="http://gisaid.org/EPI/486632" target="_blank">EPI486632</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150296" target="_blank">EPI_ISL_150296</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (6 Amino and 18 Silent)</div>
<div class="c">
. . . . . . . . syn33N (AAt),</div>
<div class="c">
. . . . . . . . syn68P (CCa),</div>
<div class="c">
. . . . . . . . 100I,</div>
<div class="c">
. . . . . . . . syn168R (AGa),</div>
<div class="c">
. . . . . . . . syn221P (CCa),</div>
<div class="c">
. . . . . . . . syn229F (TTc),</div>
<div class="c">
. . . . . . . . 266H,</div>
<div class="c">
. . . . . . . . syn270L (TTa),</div>
<div class="c">
. . . . . . . . syn273G (GGa),</div>
<div class="c">
. . . . . . . . syn291S (AGc),</div>
<div class="c">
. . . . . . . . syn300E (GAa),</div>
<div class="c">
. . . . . . . . 321K,</div>
<div class="c">
. . . . . . . . 330V,</div>
<div class="c">
. . . . . . . . 361R,</div>
<div class="c">
. . . . . . . . 362K,</div>
<div class="c">
. . . . . . . . syn417L (TTa),</div>
<div class="c">
. . . . . . . . syn517V (GTa),</div>
<div class="c">
. . . . . . . . syn529D (GAt),</div>
<div class="c">
. . . . . . . . syn530P (CCa),</div>
<div class="c">
. . . . . . . . syn534P (CCa),</div>
<div class="c">
. . . . . . . . syn549L (CTa),</div>
<div class="c">
. . . . . . . . syn555G (GGt),</div>
<div class="c">
. . . . . . . . syn597E (GAa),</div>
<div class="c">
. . . . . . . . syn662S (TCa))</div>
<br />
<div align="center">
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<a href="http://genewurx.com/" imageanchor="1" style="margin-left: 1em; margin-right: 1em;" target="_blank" title="Get the Analysis at GeneWurx.com"><img alt="GeneWurx.com" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjlhcDlruUxY7P71MI5KGK2KKCz2mq15G-wy026m24qyAfkHqh34MK4Tz5MyJZBAHLOfW-fghNuBZDSmwGGBD1fOqrpBUGuxIDABXGKsqNWBJIbxd_L7bk_lfjw0yU_a6UGf1CubcEofyrE/s320/Logo_GeneWurx_corner_bk_1in.jpg" yr="true" /></a>
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<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-small;"><em><b><span style="color: #4c1130;">pH1N1</span></b> Influenza <b><span style="color: #274e13;">PolymeraseBasic2</span></b>, <b><span style="color: #274e13;">PolymeraseBasic1</span></b>, <b><span style="color: #274e13;">PolymeraseAcidic</span></b>, <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments<br />elucidated at 2013-12-14-02_20_42_563260 by GeneWurx see.PolyDetector v0, Copyright 2007-2014. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2014 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-88577209961005381532014-01-07T23:39:00.001-06:002014-01-09T17:31:36.310-06:00pH1N1 US and Tropical Nations: CDC Fall 2013<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2014_01_06_CDC_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2014-01-07<br />
Last Update : 2014-01-09</span><br />
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2014_01_06_CDC_Map.html" target="_blank"><img alt="pH1N1 US and Island Nations: CDC Fall 2013" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2014_01_06_CDC_Map.html" target="_blank">Geographic Distribution</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
10 Sequences<br />
<hr style="width: 35%;" />
<br /></div>
Late today, 2014-01-07, a deposit arrived at <strong>GISAID</strong> dated 2014-01-06 by the <span style="color: #783f04;"><b>United States CDC</b></span> of 10 <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> sequences sampled from mid-September to early December 2013. Geographic surveillance shows a 50 / 50 split between <b>America</b> and several<b> tropical nations</b><b>.</b><br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI497732"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico16_C1_62M_2013_12_02 (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/16/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497732" target="_blank">EPI497732</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152948" target="_blank">EPI_ISL_152948</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (9 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn#9L (CTg)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn12A (GCa)</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn122K</span></b> (<b><span style="color: blue;">AAa</span></b>),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N (AAc)</span></b>,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn441H (CAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">485E</span></b>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn528V (GTg),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497723"></a><o:p></o:p></div>
<div class="c">
. . . . NewHampshire05_C1_42F_2013_11_25 (</div>
<div class="c">
. . . . . . . . A/New Hampshire/05/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497723" target="_blank">EPI497723</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152945" target="_blank">EPI_ISL_152945</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (8 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn12A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn122K</span></b> (<b><span style="color: blue;">AAa</span></b>),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N (AAc)</span></b>,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn441H (CAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn528V (GTg),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497705"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania19_C1_23F_2013_11_23 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/19/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497705" target="_blank">EPI497705</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152939" target="_blank">EPI_ISL_152939</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">368Q</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . syn450E (GAg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497729"></a><o:p></o:p></div>
<div class="c">
. . . . Missouri07_M1C1_33M_2013_11_20 (</div>
<div class="c">
. . . . . . . . A/Missouri/07/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497729" target="_blank">EPI497729</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152947" target="_blank">EPI_ISL_152947</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">368Q</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497708"></a><o:p></o:p></div>
<div class="c">
. . . . NewJersey11_C2_<b><span style="color: #993300;">1M</span></b>_2013_11_14 (</div>
<div class="c">
. . . . . . . . A/New <st1:place>Jersey</st1:place>/11/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497708" target="_blank">EPI497708</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152940" target="_blank">EPI_ISL_152940</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (8 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn501E (GAg)</span></b>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497714"></a><o:p></o:p></div>
<div class="c">
. . . . StVincentAndGrenadines3292_C2C1_32M_2013_10_08 (</div>
<div class="c">
. . . . . . . . A/St. Vincent and Grenadines/3292/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497714" target="_blank">EPI497714</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152942" target="_blank">EPI_ISL_152942</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn5T (ACt),</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G (GGt),</span></b></div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S (AGt)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn318A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">374T</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N (AAc)</span></b>,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497717"></a><o:p></o:p></div>
<div class="c">
. . . . StVincentAndGrenadines3291_C2C1_21M_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/St. Vincent and Grenadines/3291/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497717" target="_blank">EPI497717</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152943" target="_blank">EPI_ISL_152943</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn5T</span></b> (<b><span style="color: blue;">ACt</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn318A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N (AAc)</span></b>,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">437I</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b> [H7N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497726"></a><o:p></o:p></div>
<div class="c">
. . . . BVI3138_C2C1_49F_2013_10_01 (</div>
<div class="c">
. . . . . . . . A/British Virgin Islands/3138/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497726" target="_blank">EPI497726</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152946" target="_blank">EPI_ISL_152946</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn5T</span></b> (<b><span style="color: blue;">ACt</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn42G</span></b> (<b><span style="color: blue;">GGt</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn165S</span></b> (<b><span style="color: blue;">AGt</span></b>),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn318A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N (AAc)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">394K</span></b> [H7N7],</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn408E</span></b> (<b><span style="color: blue;">GAa</span></b>),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497711"></a><o:p></o:p></div>
<div class="c">
. . . . Belize3161_C2C1_<b><span style="color: #993300;">10M</span></b>_2013_09_23 (</div>
<div class="c">
. . . . . . . . A/Belize/3161/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b><br />
. . . . . . . . <b><span style="color: #274e13;">HA</span></b> Homology<br />
. . . . . . . . . . . . ~ <b>NorthCarolina09_M1C1_46M_2013_08_27</b><br />
. . . . . . . . <b><span style="color: #274e13;">NA</span></b> Homology<br />
. . . . . . . . . . . . ~ <b>Florida18_C1C1_42M_2013_06_15</b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497711" target="_blank">EPI497711</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152941" target="_blank">EPI_ISL_152941</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">88A</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R</span></b> (<b><span style="color: blue;">AGa</span></b>),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn307P</span></b> (<b><span style="color: blue;">CCg</span></b>),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">364H</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt </span></b>[<b>NorthCarolina09_M1C1_46M_2013_08_27</b><br />
. . . . . . . . . . . . . . . . . . . . . <a href="http://pf11.blogspot.com/2014/01/ph1n1-drug-resistant-low-reactor-cdc.html#EPI477423" target="_blank">Deposit Report</a><br />
. . . . . . . . . . . . . . . . . . . . . <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">364S</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497720"></a><o:p></o:p></div>
<div class="c">
. . . . Barbados3024_C2C1_58M_2013_09_19 (</div>
<div class="c">
. . . . . . . . A/Barbados/3024/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">ComplexCodon</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">333L</span></b> & <b><span style="color: blue;">syn333F (TTc)</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497720" target="_blank">EPI497720</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152944" target="_blank">EPI_ISL_152944</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn12A</span></b> (<b><span style="color: blue;">GCa</span></b>),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn122K</span></b> (<b><span style="color: blue;">AAa</span></b>),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">333L</span></b> <b><span style="color: blue;">mix</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn333F</span></b> (<b><span style="color: blue;">TTc</span></b>) <b><span style="color: blue;">mix</span></b>,</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn383N</span></b> <b><span style="color: blue;">(AAc)</span></b>,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn447N (AAt)</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI497731"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico16_C1_62M_2013_12_02 (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/16/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497731" target="_blank">EPI497731</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152948" target="_blank">EPI_ISL_152948</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (10 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 40V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn46I (ATc),</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">108V</span></b>,</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">389M</span></b>,</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497722"></a><o:p></o:p></div>
<div class="c">
. . . . NewHampshire05_C1_42F_2013_11_25 (</div>
<div class="c">
. . . . . . . . A/New Hampshire/05/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497722" target="_blank">EPI497722</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152945" target="_blank">EPI_ISL_152945</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 40V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn46I (ATc),</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">108V</span></b>,</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497704"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania19_C1_23F_2013_11_23 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/19/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497704" target="_blank">EPI497704</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152939" target="_blank">EPI_ISL_152939</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 321V,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497728"></a><o:p></o:p></div>
<div class="c">
. . . . Missouri07_M1C1_33M_2013_11_20 (</div>
<div class="c">
. . . . . . . . A/Missouri/07/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497728" target="_blank">EPI497728</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152947" target="_blank">EPI_ISL_152947</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 321V,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497707"></a><o:p></o:p></div>
<div class="c">
. . . . NewJersey11_C2_<b><span style="color: #993300;">1M</span></b>_2013_11_14 (</div>
<div class="c">
. . . . . . . . A/New <st1:place>Jersey</st1:place>/11/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Infant</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497707" target="_blank">EPI497707</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152940" target="_blank">EPI_ISL_152940</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (11 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89F</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn255I (ATt),</div>
<div class="c">
. . . . . . . . 321V,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . syn412L (CTg),</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497713"></a><o:p></o:p></div>
<div class="c">
. . . . StVincentAndGrenadines3292_C2C1_32M_2013_10_08 (</div>
<div class="c">
. . . . . . . . A/St. Vincent and Grenadines/3292/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497713" target="_blank">EPI497713</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152942" target="_blank">EPI_ISL_152942</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (12 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . syn35S (AGt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn131T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">151N</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>,</div>
<div class="c">
. . . . . . . . syn175E (GAa),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 321V,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b>,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">449K</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497716"></a><o:p></o:p></div>
<div class="c">
. . . . StVincentAndGrenadines3291_C2C1_21M_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/St. Vincent and Grenadines/3291/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497716" target="_blank">EPI497716</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152943" target="_blank">EPI_ISL_152943</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (11 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . syn35S (AGt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn131T (ACt),</div>
<div class="c">
. . . . . . . . syn175E (GAa),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 321V,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b>,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">449K</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497725"></a><o:p></o:p></div>
<div class="c">
. . . . BVI3138_C2C1_49F_2013_10_01 (</div>
<div class="c">
. . . . . . . . A/British Virgin Islands/3138/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497725" target="_blank">EPI497725</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152946" target="_blank">EPI_ISL_152946</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (11 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . syn35S (AGt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn131T (ACt),</div>
<div class="c">
. . . . . . . . syn175E (GAa),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 321V,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b>,</div>
<div class="c">
. . . . . . . . 432E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">449K</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497710"></a><o:p></o:p></div>
<div class="c">
. . . . Belize3161_C2C1_<b><span style="color: #783f04;">10M</span></b>_2013_09_23 (</div>
<div class="c">
. . . . . . . . A/Belize/3161/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b><br />
. . . . . . . . <b><span style="color: #274e13;">HA</span></b> Homology<br />
. . . . . . . . . . . . ~ <b>NorthCarolina09_M1C1_46M_2013_08_27</b><br />
. . . . . . . . <b><span style="color: #274e13;">NA</span></b> Homology<br />
. . . . . . . . . . . . ~ <b>Florida18_C1C1_42M_2013_06_15</b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497710" target="_blank">EPI497710</a><br />
<div class="c">
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152941" target="_blank">EPI_ISL_152941</a></div>
</div>
<div class="c">
. . . . . . . . 14 Polymorphisms (10 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">151N</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt </span></b>[<b>Florida18_C1C1_42M_2013_06_15</b><br />
. . . . . . . . . . . . . . . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465096" target="_blank">EPI465096</a><br />
. . . . . . . . . . . . . . . . . . . . . <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">151E</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 321V,</div>
<div class="c">
. . . . . . . . syn338V (GTg),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 397K,</div>
<div class="c">
. . . . . . . . 432E)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI497719"></a><o:p></o:p></div>
<div class="c">
. . . . Barbados3024_C2C1_58M_2013_09_19 (</div>
<div class="c">
. . . . . . . . A/Barbados/3024/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">ComplexCodon</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">333L</span></b> & <b><span style="color: blue;">syn333F (TTc)</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497719" target="_blank">EPI497719</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152944" target="_blank">EPI_ISL_152944</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (11 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 40V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn46I (ATc),</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">108V</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">151N</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>,</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">286G</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<br />
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<span style="font-size: x-small;"><em><b><span style="color: #4c1130;">pH1N1</span></b> Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2014-01-07-16_59_48_024590 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2014. </em></span>
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NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-54700322070060691362014-01-07T01:41:00.000-06:002014-02-01T13:09:12.604-06:00pH1N1 Drug Resistant Low Reactor: CDC Fall 2013<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_11_19_CDC_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2014-01-07<br />
Last Update : 2014-02-01</span><br />
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2013_11_19_CDC_Map.html" target="_blank"><img alt="pH1N1 Drug Resistant Low Reactor: CDC Fall 2013" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2013_11_19_CDC_Map.html" target="_blank">Geographic Distribution</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
46 Cases over 49 Sequences<br />
<hr style="width: 35%;" />
<br /></div>
In the 32 days covering 2013-10-17 to 2013-11-19, the <span style="color: #783f04;"><b>United States CDC</b></span> released a total of 49 <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> sequences at <strong>GISAID </strong>on 46 human cases<strong> </strong>sampled from February 2013 to October 2013. Geographic surveillance includes <b>America,</b> <b>Africa, Asia, Brazil, Ecuador, Paraguay </b>and<b> Peru. </b><br />
<br />
The sequences in this Analytic Report describe a high level of genetic activity at the <b><span style="color: #274e13;">Hemagglutinin</span></b> <b><span style="color: #660000;">antigenic area</span></b> between <b><span style="color: blue;">aa155</span></b> and <b><span style="color: blue;">aa158</span></b> with <b>5</b> amino variations and <b>4</b> silent revisions. <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b> is present in <b><span style="color: #660000;">quasi-species</span></b> on <b>2</b> American samples and as dominant form in <b>2</b> tropical countries. The <b>Dominican Republic</b> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b> <b><span style="color: #660000;">Low Reactor Correlate</span></b> appears on a <b><span style="color: #7f6000;">TamiFlu Resistant</span></b> strain. <b><span style="color: #7f6000;">Drug Resistance</span></b> is also found in <b>2</b> US sequences and <b>1</b> South American case. <br />
<br />
Transport of <b><span style="color: #660000;">High-CFR</span></b> <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1 </span><span style="color: #783f04;">Upsilon</span></b> polymorphisms remains at high effect on the <b><span style="color: #274e13;">Hemagglutinin</span></b> with homology to <b>34</b> of the <b>219</b> distinct <b><span style="color: #274e13;">HA</span></b> polymorphisms in this <b><span style="color: #783f04;">CDC</span></b> deposit.<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI486395"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong5640_CXC1_49M_2013_10_12 (</div>
<div class="c">
. . . . . . . . A/Hong Kong/5640/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486395" target="_blank">EPI486395</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150167" target="_blank">EPI_ISL_150167</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (8 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn66G (GGg),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R (AGa)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn403L (tTG),</div>
<div class="c">
. . . . . . . . syn429L (cTG),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486389"></a><o:p></o:p></div>
<div class="c">
. . . . Arizona03_C1_40M_2013_10_10 (</div>
<div class="c">
. . . . . . . . A/Arizona/03/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486389" target="_blank">EPI486389</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150165" target="_blank">EPI_ISL_150165</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (8 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R (AGa)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
</div>
<div class="c">
. . . . . . . . syn158G (GGg),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn417G (GGc)</span></b>,</div>
<div class="c">
. . . . . . . . syn429L (cTG),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485787"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana08_C1_56F_2013_10_09<b><span style="color: #993300;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/08/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485787" target="_blank">EPI485787</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150043" target="_blank">EPI_ISL_150043</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G (GGa)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486407"></a><o:p></o:p></div>
<div class="c">
. . . . Maryland08_C1C1_63x_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Maryland/08/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486407" target="_blank">EPI486407</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150171" target="_blank">EPI_ISL_150171</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G (GGa)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486379"></a><o:p></o:p></div>
<div class="c">
. . . . Washington09_C1_32F_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Washington/09/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486379" target="_blank">EPI486379</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150162" target="_blank">EPI_ISL_150162</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (8 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn94Y (TAt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R (AGa)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn391T (ACg),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn429L (cTG),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485779"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana07_C1_25F_2013_10_07<b><span style="color: #993300;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/07/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485779" target="_blank">EPI485779</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150042" target="_blank">EPI_ISL_150042</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn72S (TCg),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G (GGa)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486401"></a><o:p></o:p></div>
<div class="c">
. . . . Utah09_C1_39M_2013_10_06 (</div>
<div class="c">
. . . . . . . . A/Utah/09/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486401" target="_blank">EPI486401</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150169" target="_blank">EPI_ISL_150169</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (8 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn0T</span></b> <b><span style="color: blue;">(ACt)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn17D</span></b> <b><span style="color: blue;">(GAt)</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn92T (ACa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn94Y</span></b> (<b><span style="color: blue;">TAt)</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn123T (ACg)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">286D</span></b>,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn320G (GGg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486398"></a><o:p></o:p></div>
<div class="c">
. . . . Alabama08_C1_<b><span style="color: #993300;">5F</span></b>_2013_10_05 (</div>
<div class="c">
. . . . . . . . A/Alabama/08/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486398" target="_blank">EPI486398</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150168" target="_blank">EPI_ISL_150168</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G (GGa)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486404"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota08_M2C1_xM_2013_10_03 (</div>
<div class="c">
. . . . . . . . A/Minnesota/08/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486404" target="_blank">EPI486404</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150170" target="_blank">EPI_ISL_150170</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (12 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">73I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">77G</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R (AGa)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">123I</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">218V mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn429L (cTG),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485754"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania07_C1_<b><span style="color: #993300;">1F</span></b>_2013_10_02 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/07/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754" target="_blank">EPI485754</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (11 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">50I</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">145R</span></b>,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289L</span></b>,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn337A (GCt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn353G (GGg),</div>
<div class="c">
. . . . . . . . syn361G (GGa),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn403L (tTG),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn516I (ATc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485751"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi08_C1_59M_2013_10_02 (</div>
<div class="c">
. . . . . . . . A/Mississippi/08/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485751" target="_blank">EPI485751</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150034" target="_blank">EPI_ISL_150034</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn195Y (TAc)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn339F (TTt)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486392"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico18_C2_48F_2013_10_01 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/18/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486392" target="_blank">EPI486392</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150166" target="_blank">EPI_ISL_150166</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn178V (GTa) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn487Y (TAc)</span></b>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI485757"></a><o:p></o:p></div>
<div class="c">
. . . . Missouri06_M1C1_60F_2013_09_27 (</div>
<div class="c">
. . . . . . . . A/Missouri/06/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485757" target="_blank">EPI485757</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150036" target="_blank">EPI_ISL_150036</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn160S (TCt)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">173E</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G (GGa)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn358N (AAc)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485760"></a><o:p></o:p></div>
<div class="c">
. . . . NewJersey09_C1_52M_2013_09_23 (</div>
<div class="c">
. . . . . . . . A/New <st1:place>Jersey</st1:place>/09/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">48K</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485760" target="_blank">EPI485760</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150037" target="_blank">EPI_ISL_150037</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (10 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48K</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">171E</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn342G (GGa)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn441H (CAt)</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485763"></a><o:p></o:p></div>
<div class="c">
. . . . NewHampshire04_<b><span style="color: #993300;">E3</span></b>_27F_2013_09_17<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New Hampshire/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Rare Set</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">237I</span></b> and <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">259T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485763" target="_blank">EPI485763</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150038" target="_blank">EPI_ISL_150038</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (11 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">314N</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484962"></a><o:p></o:p></div>
<div class="c">
. . . . NewHampshire04_<b><span style="color: #993300;">C1</span></b>_27F_2013_09_17 (</div>
<div class="c">
. . . . . . . . A/New Hampshire/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Rare Set</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">237I</span></b> and <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">259T<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484962" target="_blank">EPI484962</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149775" target="_blank">EPI_ISL_149775</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (10 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">314N</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484977"></a><o:p></o:p></div>
<div class="c">
. . . . Wyoming04_C1_46M_2013_09_14<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Wyoming/04/2013 </div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">227G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484977" target="_blank">EPI484977</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149779" target="_blank">EPI_ISL_149779</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (12 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#7I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">172R</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">227G</span></b> <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b> [Ukraine<a href="http://pf11.blogspot.com/2013/11/ha-263s-emergent-h7n9-ph1n1-receptor.html#EPI462073" target="_blank">5794</a>_C2M1_18F_2013_02_20],<br />
. . . . . . . . . . . . . . . . . [<st1:country-region>France</st1:country-region><a href="http://pf11.blogspot.com/2011/12/avian-homology-on-high-diversity.html#EPI346699" target="_blank">Lorraine1176</a>_50x_2011_02_23<span style="color: #660000;">_<b>TmX</b></span>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [Utah20_<a href="http://gisaid.org/EPI/231498" target="_blank">C22</a>_10M_2009_07_25<b><span style="color: red;">_VxX</span></b>],<br />
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn320G (GGg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . syn375I (ATa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn485G (GGa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486383"></a><o:p></o:p></div>
<div class="c">
. . . . SouthCarolina02_X1C1_<b><span style="color: #993300;">14M</span></b>_2013_09_11 (</div>
<div class="c">
. . . . . . . . A/South Carolina/02/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486383" target="_blank">EPI486383</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150163" target="_blank">EPI_ISL_150163</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (10 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn2N (AAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">77G</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn134G (GGg),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn255R (AGg) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b> <b><span style="color: blue;">mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn402H (CAt) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486386"></a><o:p></o:p></div>
<div class="c">
. . . . India3743_C1C2_<b><span style="color: #993300;">16F</span></b>_2013_09_07 (</div>
<div class="c">
. . . . . . . . A/India/3743/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486386" target="_blank">EPI486386</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150164" target="_blank">EPI_ISL_150164</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . #<b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn44L (CTg),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn334G (GGa),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">446R</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn518A (GCa),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482159"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico12_M1C1_60M_2013_09_06 (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/12/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482159" target="_blank">EPI482159</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149345" target="_blank">EPI_ISL_149345</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (9 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn14N (AAc),</div>
<div class="c">
. . . . . . . . syn42G (GGt),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . syn165S (AGt),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">187N mix wt</span></b> [HongKong9232_C5C1_49F_2012_12_18</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439312" target="_blank">EPI439312</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138683" target="_blank">EPI_ISL_138683</a>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn383N (AAc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482179"></a><o:p></o:p></div>
<div class="c">
. . . . Texas26_M1C1_<b><span style="color: #993300;">3M</span></b>_2013_09_05 (</div>
<div class="c">
. . . . . . . . A/Texas/26/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482179" target="_blank">EPI482179</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149353" target="_blank">EPI_ISL_149353</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn232Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn507K (AAa),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482171"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin13_<b><span style="color: #993300;">E3</span></b>_25F_2013_09_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Wisconsin/13/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482171" target="_blank">EPI482171</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149350" target="_blank">EPI_ISL_149350</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn111V (GTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E mix wt</span></b> [H5N1 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [Emergent H7N9 LookAside<sub>d</sub>
wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166E</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn285P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn324V (GTt) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484725"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin13_<b><span style="color: #993300;">C1</span></b>_25F_2013_09_05 (</div>
<div class="c">
. . . . . . . . A/Wisconsin/13/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484725" target="_blank">EPI484725</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148737" target="_blank">EPI_ISL_148737</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn111V (GTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166E</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn285P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482181"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana06_C1_25M_2013_09_03 (</div>
<div class="c">
. . . . . . . . A/Louisiana/06/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482181" target="_blank">EPI482181</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149354" target="_blank">EPI_ISL_149354</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#7I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">1T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn82I (ATa),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn222K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn342G (GGa),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn485G (GGa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482173"></a><o:p></o:p></div>
<div class="c">
. . . . NorthCarolina10_<b><span style="color: #783f04;">E3</span></b>_53F_2013_08_27 (</div>
<div class="c">
. . . . . . . . A/North Carolina/10/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482173" target="_blank">EPI482173</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149351" target="_blank">EPI_ISL_149351</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn3A (GCt) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn339F (TTt)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477423"></a><o:p></o:p></div>
<div class="c">
. . . . NorthCarolina09_M1C1_46M_2013_08_27 (</div>
<div class="c">
. . . . . . . . A/North Carolina/09/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477423" target="_blank">EPI477423</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148733" target="_blank">EPI_ISL_148733</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn141H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn339F (TTt)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">364S mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484965"></a><o:p></o:p></div>
<div class="c">
. . . . Georgia04_M2C1_xM_2013_08_08 (</div>
<div class="c">
. . . . . . . . A/Georgia/04/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484965" target="_blank">EPI484965</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149776" target="_blank">EPI_ISL_149776</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (10 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn231N (AAt) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">314N</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">437N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484980"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica5802_E3_xM_2013_08_05 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/5802/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484980" target="_blank">EPI484980</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149780" target="_blank">EPI_ISL_149780</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (10 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn401N (AAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI484959"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica5802_C2_xM_2013_08_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Costa Rica/5802/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">157E</span></b></div>
<div class="c">
. . . . . . . . <a href="https://www.blogger.com/blogger.g?blogID=4506613821928567934" name="OLE_LINK2"><b><span style="color: #993300;">CrossClade 188T and 208K</span></b></a></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484959" target="_blank">EPI484959</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149774" target="_blank">EPI_ISL_149774</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (11 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">157E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">260I</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn401N (AAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484720"></a><o:p></o:p></div>
<div class="c">
. . . . Brazil8500_C1C2_xM_2013_08_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Brazil/8500/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">155I, 158E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484720" target="_blank">EPI484720</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148738" target="_blank">EPI_ISL_148738</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (11 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155I</span></b>,</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E</span></b>,</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219R mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn382V (GTg),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485766"></a><o:p></o:p></div>
<div class="c">
. . . . Bangladesh3003_C2C1_<b><span style="color: #993300;">18F</span></b>_2013_08_04 (</div>
<div class="c">
. . . . . . . . A/Bangladesh/3003/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485766" target="_blank">EPI485766</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150039" target="_blank">EPI_ISL_150039</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (10 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87N</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn419L (CTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">437N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484724"></a><o:p></o:p></div>
<div class="c">
. . . . Peru7878_C2_50F_2013_07_23 (</div>
<div class="c">
. . . . . . . . A/Peru/7878/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484724" target="_blank">EPI484724</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148734" target="_blank">EPI_ISL_148734</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">51S</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">406G</span></b>,</div>
<div class="c">
. . . . . . . . syn440Y (TAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484723"></a><o:p></o:p></div>
<div class="c">
. . . . Ecuador1373_C2_55M_2013_07_19<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Ecuador/1373/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484723" target="_blank">EPI484723</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148735" target="_blank">EPI_ISL_148735</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (11 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn58C (TGc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E mix wt</span></b> [H5N1 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [Emergent H7N9 LookAside<sub>d</sub>
wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">144T</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">218V mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . 237L,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn360Q (CAa),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484954"></a><o:p></o:p></div>
<div class="c">
. . . . Kenya128_X1C2_<b><span style="color: #993300;">3x</span></b>_2013_07_08 (</div>
<div class="c">
. . . . . . . . A/Kenya/128/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484954" target="_blank">EPI484954</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149772" target="_blank">EPI_ISL_149772</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (9 Amino and 17 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn40H (CAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">298V</span></b>,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn342G (GGa),</div>
<div class="c">
. . . . . . . . syn361G (GGa),</div>
<div class="c">
. . . . . . . . syn366A (GCt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn404E (GAg),</div>
<div class="c">
. . . . . . . . syn419L (CTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">442N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484974"></a><o:p></o:p></div>
<div class="c">
. . . . ElSalvador1396_C1C1_<b><span style="color: #993300;">5M</span></b>_2013_07_05 (</div>
<div class="c">
. . . . . . . . A/El Salvador/1396/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484974" target="_blank">EPI484974</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149778" target="_blank">EPI_ISL_149778</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn343G (GGa),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">476D</span></b>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484969"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay17_C1C1_55F_2013_07_01 (</div>
<div class="c">
. . . . . . . . A/Paraguay/17/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484969" target="_blank">EPI484969</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149777" target="_blank">EPI_ISL_149777</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (11 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87I</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">142D</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>47</b>
Cases over <b>51</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_142D_GaT_2013_11_02_Map.html">map</a>)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn419L (tTG)</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">528I</span></b> [H7N7 wild type],</div>
<div class="c">
. . . . . . . . . [H7N9 LookAside<sub>u</sub>],</div>
<div class="c">
. . . . . . . . . [avH1N1])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477419"></a><o:p></o:p></div>
<div class="c">
. . . . Brazil5921_C1_55F_2013_06_27<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Brazil/5921/2013</div>
<div class="c">
. . . . . . . . <a href="https://www.blogger.com/blogger.g?blogID=4506613821928567934" name="OLE_LINK1"><b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">155I</span></b></a></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477419" target="_blank">EPI477419</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148731" target="_blank">EPI_ISL_148731</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn42G (GGa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn103E (GAa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155I</span></b>,</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">458T</span></b>,</div>
<div class="c">
. . . . . . . . syn488D (GAt),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484719"></a><o:p></o:p></div>
<div class="c">
. . . . Peru7096_C2_<b><span style="color: #993300;">13x</span></b>_2013_06_25 (</div>
<div class="c">
. . . . . . . . A/Peru/7096/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade </span><span style="color: #003300;">HA</span></b>
<b><span style="color: blue;">188P </span>and<span style="color: blue;"> 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484719" target="_blank">EPI484719</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148730" target="_blank">EPI_ISL_148730</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (11 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">102V mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188P</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">210N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn323N (AAc),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn507K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485771"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay91_C1C1_<b><span style="color: #993300;">2M</span></b>_2013_06_24<b><span style="color: #993300;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Paraguay/91/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485771" target="_blank">EPI485771</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150041" target="_blank">EPI_ISL_150041</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn22V (GTg),</div>
<div class="c">
. . . . . . . . syn49G (GGa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484956"></a><o:p></o:p></div>
<div class="c">
. . . . Alaska07_M1C1_63F_2013_06_23 (</div>
<div class="c">
. . . . . . . . A/Alaska/07/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484956" target="_blank">EPI484956</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149773" target="_blank">EPI_ISL_149773</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn360Q (CAa),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn417G (GGa),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn490P (CCg),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482164"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica8288_C1_25M_2013_06_18 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/8288/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482164" target="_blank">EPI482164</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149347" target="_blank">EPI_ISL_149347</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn131S (TCa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn401N (AAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477445"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7626_C2_34F_2013_06_15<b><span style="color: #993300;">_TmX</span><span style="color: red;">_VxX</span></b>
(</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7626/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445" target="_blank">EPI477445</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (11 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . #6M,</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b>,</div>
<div class="c">
. . . . . . . . syn111V (GTa),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . syn127P (CCa),</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn171D (GAc),</div>
<div class="c">
. . . . . . . . syn178V (GTt),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . .<b><span style="color: blue;"> 211R</span></b> [H7N7],</div>
<div class="c">
. . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H13N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn337A (GCt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn488D (GAt),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485768"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica7069_C1_29F_2013_06_10 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/7069/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485768" target="_blank">EPI485768</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150040" target="_blank">EPI_ISL_150040</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R (AGa)</span></b>,</div>
</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn151L (TTg)</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn401N (AAt)</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">464E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484726"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7548_C2_19M_2013_06_05 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7548/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484726" target="_blank">EPI484726</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148732" target="_blank">EPI_ISL_148732</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (10 Amino and 17 Silent)</div>
<div class="c">
. . . . . . . . syn#6L (tTG),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn92T (ACa),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . syn284T (ACc),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn307P (CCg),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">396M</span></b>,</div>
<div class="c">
. . . . . . . . syn428L (CTc),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">461R</span></b>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc),</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI482166"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica5790_C1_23M_2013_05_30 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/5790/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482166" target="_blank">EPI482166</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149348" target="_blank">EPI_ISL_149348</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">59D</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn116R (AGa)</span></b>,</div>
</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn292S (AGt)</span></b>,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn361G (GGa)</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">499D</span></b>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn504D (GAc)</span></b>,</div>
<div class="c">
. . . . . . . . syn507K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482176"></a><o:p></o:p></div>
<div class="c">
. . . . Laos387_C1C1_22M_2013_05_13 (</div>
<div class="c">
. . . . . . . . A/Laos/387/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482176" target="_blank">EPI482176</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149352" target="_blank">EPI_ISL_149352</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (7 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482169"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso875_C2_2013_02_26 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/875/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">262K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482169" target="_blank">EPI482169</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149349" target="_blank">EPI_ISL_149349</a></div>
<div class="c">
. . . . . . . . 38 Polymorphisms (11 Amino and 27 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#11T</span></b> [avH1N1, zH3N2, H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn56G (GGc) [Emergent H7N9 Avian],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [avH1N1<sub>farm</sub>, zH3N2, 1918],</div>
<div class="c">
. . . . . . . . syn99I (ATt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [Emergent H7N9</div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate: </div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhouCity1_LLC1E3_35F_2013_03_15</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486492" target="_blank">EPI486492</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150198" target="_blank">EPI_ISL_150198</a></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region>
NIID <b>Lab-Derived</b>, </div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],</div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . syn164L (CTt) [pH1N1 Upsilon],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">173R</span></b> [H7N9 Avian],</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . syn215P (CCa),</div>
<div class="c">
. . . . . . . . syn219I (ATt),</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [H7N9 Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor 266V gTC, gTT],</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . syn295F (TTc),</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn326S (TCc),</div>
<div class="c">
. . . . . . . . syn331G (GGt) [H7N9 Avian],</div>
<div class="c">
. . . . . . . . syn337A (GCt) [H7N9 Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [Pennsylvania07_C1_1F_2013_10_02<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754" target="_blank">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . DominicanRep7626_C2_34F_2013_06_15<b><span style="color: #993300;">_TmX</span><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445" target="_blank">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn475D (GAc),</div>
<div class="c">
. . . . . . . . syn486T (ACc) [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H3N8 Avian],</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482162"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso876_C2_2013_02_26<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/876/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">262K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482162" target="_blank">EPI482162</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149346" target="_blank">EPI_ISL_149346</a></div>
<div class="c">
. . . . . . . . 39 Polymorphisms (12 Amino and 27 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#11T</span></b> [avH1N1, zH3N2, H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13T</span></b> [H5N1, H9N2, H13],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn56G (GGc) [Emergent H7N9 Avian],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [avH1N1<sub>farm</sub>, zH3N2, 1918],</div>
<div class="c">
. . . . . . . . syn99I (ATt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [Emergent H7N9</div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate: </div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhouCity1_LLC1E3_35F_2013_03_15</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486492" target="_blank">EPI486492</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150198" target="_blank">EPI_ISL_150198</a></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region>
NIID <b>Lab-Derived</b>, </div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],</div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E</span></b>,</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . syn215P (CCa),</div>
<div class="c">
. . . . . . . . syn219I (ATt),</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [H7N9 Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor 266V gTC, gTT],</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . syn295F (TTc),</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn326S (TCc),</div>
<div class="c">
. . . . . . . . syn331G (GGt) [H7N9 Avian],</div>
<div class="c">
. . . . . . . . syn337A (GCt) [H7N9 Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [Pennsylvania07_C1_1F_2013_10_02<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754" target="_blank">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . DominicanRep7626_C2_34F_2013_06_15<b><span style="color: #993300;">_TmX</span><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445" target="_blank">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn425N (AAc)</span></b> [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H7N7 Human Fatality],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn475D (GAc),</div>
<div class="c">
. . . . . . . . syn486T (ACc) [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H3N8 Avian],</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484718"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso859_C1_2013_02_18 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/859/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">262K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484718" target="_blank">EPI484718</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148736" target="_blank">EPI_ISL_148736</a></div>
<div class="c">
. . . . . . . . 37 Polymorphisms (10 Amino and 27 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#11T</span></b> [avH1N1, zH3N2, H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn56G (GGc) [Emergent H7N9 Avian],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [avH1N1<sub>farm</sub>, zH3N2, 1918],</div>
<div class="c">
. . . . . . . . syn99I (ATt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [Emergent H7N9</div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate: </div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhouCity1_LLC1E3_35F_2013_03_15</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486492" target="_blank">EPI486492</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150198" target="_blank">EPI_ISL_150198</a></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region>
NIID <b>Lab-Derived</b>, </div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],</div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . syn215P (CCa),</div>
<div class="c">
. . . . . . . . syn219I (ATt),</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [H7N9 Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor 266V gTC, gTT],</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . syn295F (TTc),</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn326S (TCc),</div>
<div class="c">
. . . . . . . . syn331G (GGt) [H7N9 Avian],</div>
<div class="c">
. . . . . . . . syn337A (GCt) [H7N9 Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [Pennsylvania07_C1_1F_2013_10_02<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754" target="_blank">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . DominicanRep7626_C2_34F_2013_06_15<b><span style="color: #993300;">_TmX</span><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445" target="_blank">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn425N (AAc)</span></b> [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H7N7 Human Fatality],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn475D (GAc),</div>
<div class="c">
. . . . . . . . syn486T (ACc) [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H3N8 Avian],</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa))<br />
<br /></div>
</div>
</div>
</div>
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI486394"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong5640_CXC1_49M_2013_10_12 (</div>
<div class="c">
. . . . . . . . A/Hong Kong/5640/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486394" target="_blank">EPI486394</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150167" target="_blank">EPI_ISL_150167</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (8 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40I</span></b>,</div>
<div class="c">
. . . . . . . . syn41G (GGa),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn125S (TCt),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn220R (AGg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn383T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486388"></a><o:p></o:p></div>
<div class="c">
. . . . Arizona03_C1_40M_2013_10_10 (</div>
<div class="c">
. . . . . . . . A/Arizona/03/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486388" target="_blank">EPI486388</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150165" target="_blank">EPI_ISL_150165</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (10 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">41E</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn125S (TCt),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn220R (AGg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn383T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485786"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana08_C1_56F_2013_10_09<b><span style="color: #993300;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/08/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485786" target="_blank">EPI485786</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150043" target="_blank">EPI_ISL_150043</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (11 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275Y</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486406"></a><o:p></o:p></div>
<div class="c">
. . . . Maryland08_C1C1_63x_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Maryland/08/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486406" target="_blank">EPI486406</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150171" target="_blank">EPI_ISL_150171</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn135T (ACc),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn331K (AAa),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486378"></a><o:p></o:p></div>
<div class="c">
. . . . Washington09_C1_32F_2013_10_07 (</div>
<div class="c">
. . . . . . . . A/Washington/09/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486378" target="_blank">EPI486378</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150162" target="_blank">EPI_ISL_150162</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40I</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn125S (TCt),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn220R (AGg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn383T (ACt),</div>
<div class="c">
. . . . . . . . syn415L (tTG),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485778"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana07_C1_25F_2013_10_07<b><span style="color: #993300;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/07/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485778" target="_blank">EPI485778</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150042" target="_blank">EPI_ISL_150042</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (12 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">263V mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275Y</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486400"></a><o:p></o:p></div>
<div class="c">
. . . . Utah09_C1_39M_2013_10_06 (</div>
<div class="c">
. . . . . . . . A/Utah/09/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486400" target="_blank">EPI486400</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150169" target="_blank">EPI_ISL_150169</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn45Q (CAa),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn114V (GTa),</div>
<div class="c">
. . . . . . . . syn162P (CCc),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn267V (GTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn431P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486397"></a><o:p></o:p></div>
<div class="c">
. . . . Alabama08_C1_<b><span style="color: #993300;">5F</span></b>_2013_10_05 (</div>
<div class="c">
. . . . . . . . A/Alabama/08/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486397" target="_blank">EPI486397</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150168" target="_blank">EPI_ISL_150168</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (11 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">394I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486403"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota08_M2C1_xM_2013_10_03 (</div>
<div class="c">
. . . . . . . . A/Minnesota/08/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486403" target="_blank">EPI486403</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150170" target="_blank">EPI_ISL_150170</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40I</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn63N (AAc),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn125S (TCt),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn220R (AGg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn383T (ACt),</div>
<div class="c">
. . . . . . . . syn422F (TTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485753"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania07_C1_<b><span style="color: #993300;">1F</span></b>_2013_10_02 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/07/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485753" target="_blank">EPI485753</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (7 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">19I</span></b>,</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn70S (AGt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn291V (GTa),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">394I</span></b>,</div>
<div class="c">
. . . . . . . . syn429G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485750"></a><o:p></o:p></div>
<div class="c">
. . . . Mississippi08_C1_59M_2013_10_02 (</div>
<div class="c">
. . . . . . . . A/Mississippi/08/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485750" target="_blank">EPI485750</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150034" target="_blank">EPI_ISL_150034</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486391"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico18_C2_48F_2013_10_01 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/18/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486391" target="_blank">EPI486391</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150166" target="_blank">EPI_ISL_150166</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (10 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485756"></a><o:p></o:p></div>
<div class="c">
. . . . Missouri06_M1C1_60F_2013_09_27 (</div>
<div class="c">
. . . . . . . . A/Missouri/06/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485756" target="_blank">EPI485756</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150036" target="_blank">EPI_ISL_150036</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn322F (TTt),</div>
<div class="c">
. . . . . . . . syn331K (AAa),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485759"></a><o:p></o:p></div>
<div class="c">
. . . . NewJersey09_C1_52M_2013_09_23 (</div>
<div class="c">
. . . . . . . . A/New <st1:place>Jersey</st1:place>/09/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485759" target="_blank">EPI485759</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150037" target="_blank">EPI_ISL_150037</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (12 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn307N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">443V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">466I</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: maroon;">Emergent H7N9</span></b> LookAside<sub>u</sub> wild type])</div>
<div class="c">
<br /></div>
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI485762"></a><o:p></o:p></div>
<div class="c">
. . . . NewHampshire04_<b><span style="color: #993300;">E3</span></b>_27F_2013_09_17<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New Hampshire/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Rare Set</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">237I</span></b> and <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">259T<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485762" target="_blank">EPI485762</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150038" target="_blank">EPI_ISL_150038</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (12 Amino
and 4 Silent) </div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119K mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">126S</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484961"></a><o:p></o:p></div>
<div class="c">
. . . . NewHampshire04_<b><span style="color: #993300;">C1</span></b>_27F_2013_09_17 (</div>
<div class="c">
. . . . . . . . A/New Hampshire/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484961" target="_blank">EPI484961</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149775" target="_blank">EPI_ISL_149775</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">126S</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484976"></a><o:p></o:p></div>
<div class="c">
. . . . Wyoming04_C1_46M_2013_09_14<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Wyoming/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">227G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484976" target="_blank">EPI484976</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149779" target="_blank">EPI_ISL_149779</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">211M</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">381S</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . syn426L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486382"></a><o:p></o:p></div>
<div class="c">
. . . . SouthCarolina02_X1C1_<b><span style="color: #993300;">14M</span></b>_2013_09_11 (</div>
<div class="c">
. . . . . . . . A/South Carolina/02/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486382" target="_blank">EPI486382</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150163" target="_blank">EPI_ISL_150163</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI486385"></a><o:p></o:p></div>
<div class="c">
. . . . India3743_C1C2_<b><span style="color: #993300;">16F</span></b>_2013_09_07 (</div>
<div class="c">
. . . . . . . . A/India/3743/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/486385" target="_blank">EPI486385</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150164" target="_blank">EPI_ISL_150164</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (9 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn116V (GTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">147R</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn262K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482158"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico12_M1C1_60M_2013_09_06 (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/12/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482158" target="_blank">EPI482158</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149345" target="_blank">EPI_ISL_149345</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (10 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn35S (AGt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn131T (ACt),</div>
<div class="c">
. . . . . . . . syn175E (GAa),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn393I (ATt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">449K</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482178"></a><o:p></o:p></div>
<div class="c">
. . . . Texas26_M1C1_<b><span style="color: #993300;">3M</span></b>_2013_09_05 (</div>
<div class="c">
. . . . . . . . A/Texas/26/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482178" target="_blank">EPI482178</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149353" target="_blank">EPI_ISL_149353</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (10 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn143K (AAg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn217K (AAa),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482170"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin13_<b><span style="color: #993300;">E3</span></b>_25F_2013_09_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Wisconsin/13/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482170" target="_blank">EPI482170</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149350" target="_blank">EPI_ISL_149350</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn54I (ATc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">56S mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn79S (TCg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn229S (TCa),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn329N (AAc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477429"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin13_<b><span style="color: #993300;">C1</span></b>_25F_2013_09_05 (</div>
<div class="c">
. . . . . . . . A/Wisconsin/13/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477429" target="_blank">EPI477429</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148737" target="_blank">EPI_ISL_148737</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (5 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn54I (ATc),</div>
<div class="c">
. . . . . . . . syn79S (TCg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn229S (TCa),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn329N (AAc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482180"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana06_C1_25M_2013_09_03 (</div>
<div class="c">
. . . . . . . . A/Louisiana/06/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482180" target="_blank">EPI482180</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149354" target="_blank">EPI_ISL_149354</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (11 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">4T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">203M</span></b>,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">334N</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482172"></a><o:p></o:p></div>
<div class="c">
. . . . NorthCarolina10_E3_53F_2013_08_27 (</div>
<div class="c">
. . . . . . . . A/North Carolina/10/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482172" target="_blank">EPI482172</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149351" target="_blank">EPI_ISL_149351</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477422"></a><o:p></o:p></div>
<div class="c">
. . . . NorthCarolina09_M1C1_46M_2013_08_27 (</div>
<div class="c">
. . . . . . . . A/North Carolina/09/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477422" target="_blank">EPI477422</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148733" target="_blank">EPI_ISL_148733</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484964"></a><o:p></o:p></div>
<div class="c">
. . . . Georgia04_M2C1_xM_2013_08_08 (</div>
<div class="c">
. . . . . . . . A/Georgia/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484964" target="_blank">EPI484964</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149776" target="_blank">EPI_ISL_149776</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">99V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">390E mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Novel</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . [H5N1 Shanghai tiger],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI484979"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica5802_<b><span style="color: #993300;">E3</span></b>_xM_2013_08_05 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/5802/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484979" target="_blank">EPI484979</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149780" target="_blank">EPI_ISL_149780</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn155Y (TAc),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn431P (CCt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484958"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica5802_C2_xM_2013_08_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Costa Rica/5802/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">157E</span></b></div>
<div class="c">
. . . . . . . . <a href="https://www.blogger.com/blogger.g?blogID=4506613821928567934" name="OLE_LINK2"><b><span style="color: #993300;">CrossClade 188T and 208K</span></b></a></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484958" target="_blank">EPI484958</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149774" target="_blank">EPI_ISL_149774</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn155Y (TAc),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn431P (CCt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477431"></a><o:p></o:p></div>
<div class="c">
. . . . Brazil8500_C1C2_xM_2013_08_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Brazil/8500/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">155I, 158E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477431" target="_blank">EPI477431</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148738" target="_blank">EPI_ISL_148738</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (9 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn185H (CAc),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">366R</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485765"></a><o:p></o:p></div>
<div class="c">
. . . . Bangladesh3003_C2C1_<b><span style="color: #993300;">18F</span></b>_2013_08_04 (</div>
<div class="c">
. . . . . . . . A/Bangladesh/3003/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485765" target="_blank">EPI485765</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150039" target="_blank">EPI_ISL_150039</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (8 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn217K (AAa),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477425"></a><o:p></o:p></div>
<div class="c">
. . . . Peru7878_C2_50F_2013_07_23 (</div>
<div class="c">
. . . . . . . . A/Peru/7878/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477425" target="_blank">EPI477425</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148734" target="_blank">EPI_ISL_148734</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (11 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">15I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (TTa),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477426"></a><o:p></o:p></div>
<div class="c">
. . . . Ecuador1373_C2_55M_2013_07_19<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Ecuador/1373/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477426" target="_blank">EPI477426</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148735" target="_blank">EPI_ISL_148735</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (7 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">45K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">77E</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn220R (AGg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn266S (TCg),</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn415L (tTG))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484953"></a><o:p></o:p></div>
<div class="c">
. . . . Kenya128_X1C2_<b><span style="color: #993300;">3x</span></b>_2013_07_08 (</div>
<div class="c">
. . . . . . . . A/Kenya/128/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Diverse</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484953" target="_blank">EPI484953</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149772" target="_blank">EPI_ISL_149772</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (7 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">307K mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">308H</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn432K (AAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484973"></a><o:p></o:p></div>
<div class="c">
. . . . ElSalvador1396_C1C1_<b><span style="color: #993300;">5M</span></b>_2013_07_05 (</div>
<div class="c">
. . . . . . . . A/El Salvador/1396/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484973" target="_blank">EPI484973</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149778" target="_blank">EPI_ISL_149778</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">ReEmergent</span></b> (2010)],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484968"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay17_C1C1_55F_2013_07_01 (</div>
<div class="c">
. . . . . . . . A/Paraguay/17/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484968" target="_blank">EPI484968</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149777" target="_blank">EPI_ISL_149777</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477418"></a><o:p></o:p></div>
<div class="c">
. . . . Brazil5921_C1_55F_2013_06_27<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Brazil/5921/2013</div>
<div class="c">
. . . . . . . . <a href="https://www.blogger.com/blogger.g?blogID=4506613821928567934" name="OLE_LINK1"><b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">155I</span></b></a></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477418" target="_blank">EPI477418</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148731" target="_blank">EPI_ISL_148731</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (8 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn267V (GTa),</div>
<div class="c">
. . . . . . . . syn295N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477416"></a><o:p></o:p></div>
<div class="c">
. . . . Peru7096_C2_<b><span style="color: #993300;">13x</span></b>_2013_06_25 (</div>
<div class="c">
. . . . . . . . A/Peru/7096/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade </span><span style="color: #003300;">HA</span></b>
<b><span style="color: blue;">188P </span>and<span style="color: blue;"> 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477416" target="_blank">EPI477416</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148730" target="_blank">EPI_ISL_148730</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">19I</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn307N (AAt),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn414G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485770"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay91_C1C1_<b><span style="color: #993300;">2M</span></b>_2013_06_24<b><span style="color: #993300;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Paraguay/91/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485770" target="_blank">EPI485770</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150041" target="_blank">EPI_ISL_150041</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (9 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn35S (AGt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275Y mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484955"></a><o:p></o:p></div>
<div class="c">
. . . . Alaska07_M1C1_63F_2013_06_23 (</div>
<div class="c">
. . . . . . . . A/Alaska/07/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484955" target="_blank">EPI484955</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149773" target="_blank">EPI_ISL_149773</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (9 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">34V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">108V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn217K (AAa),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn291V</span></b> (<b><span style="color: blue;">GTt</span></b>),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn395G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484963"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica8288_C1_25M_2013_06_18 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/8288/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484963" target="_blank">EPI484963</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149347" target="_blank">EPI_ISL_149347</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn155Y (TAc),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn431P (CCt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477444"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7626_C2_34F_2013_06_15<b><span style="color: #993300;">_TmX</span><span style="color: red;">_VxX</span></b>
(</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7626/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477444" target="_blank">EPI477444</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (8 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40V</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275Y</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">381A</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn425E (GAg),</div>
<div class="c">
. . . . . . . . syn426L (tTA),</div>
<div class="c">
. . . . . . . . syn439S (AGt),</div>
<div class="c">
. . . . . . . . syn443I (ATt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485767"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica7069_C1_29F_2013_06_10 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/7069/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/485767" target="_blank">EPI485767</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150040" target="_blank">EPI_ISL_150040</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">142N</span></b>,</div>
<div class="c">
. . . . . . . . syn155Y (TAc),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">265R</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn431P (CCt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477421"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7548_C2_19M_2013_06_05 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7548/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477421" target="_blank">EPI477421</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148732" target="_blank">EPI_ISL_148732</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b>,</div>
<div class="c">
. . . . . . . . syn101S (AGc),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">199N</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b>,</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484981"></a><o:p></o:p></div>
<div class="c">
. . . . CostaRica5790_C1_23M_2013_05_30 (</div>
<div class="c">
. . . . . . . . A/Costa Rica/5790/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484981" target="_blank">EPI484981</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149348" target="_blank">EPI_ISL_149348</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (7 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn30I (ATa),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn58N (AAt),</div>
<div class="c">
. . . . . . . . syn70S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">82P</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184C (TGc) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">313H</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482175"></a><o:p></o:p></div>
<div class="c">
. . . . Laos387_C1C1_22M_2013_05_13 (</div>
<div class="c">
. . . . . . . . A/Laos/387/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482175" target="_blank">EPI482175</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149352" target="_blank">EPI_ISL_149352</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn93P (CCg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn153S (AGt),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">395E</span></b> [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482168"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso875_C2_2013_02_26 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/875/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">262K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482168" target="_blank">EPI482168</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149349" target="_blank">EPI_ISL_149349</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b>,</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn192T (ACc),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn370G (GGg),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482161"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso876_C2_2013_02_26<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/876/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">262K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> GenoType <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482161" target="_blank">EPI482161</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149346" target="_blank">EPI_ISL_149346</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (5 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b>,</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn140L (tTA)</span></b>,</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn192T (ACc),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn370G (GGg),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477427"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso859_C1_2013_02_18 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/859/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">262K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477427" target="_blank">EPI477427</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148736" target="_blank">EPI_ISL_148736</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (5 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b>,</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn47E (GAg)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn192T (ACc),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn370G (GGg),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PB2</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI485784"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana08_C1_56F_2013_10_09<b><span style="color: maroon;">_TmX </span></b>(</div>
<div class="c">
. . . . . . . . A/Louisiana/08/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID PB2 <a href="http://gisaid.org/EPI/485784" target="_blank">EPI485784</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150043" target="_blank">EPI_ISL_150043</a></div>
<div class="c">
. . . . . . . . 31 Polymorphisms (9 Amino and 22 Silent)</div>
<div class="c">
. . . . . . . . 54K,</div>
<div class="c">
. . . . . . . . 66I,</div>
<div class="c">
. . . . . . . . syn107S (AGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155S</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . 195N,</div>
<div class="c">
. . . . . . . . syn219P (CCg),</div>
<div class="c">
. . . . . . . . syn222G (GGt),</div>
<div class="c">
. . . . . . . . syn223G (GGg),</div>
<div class="c">
. . . . . . . . syn258S (AGc),</div>
<div class="c">
. . . . . . . . syn291G (GGt),</div>
<div class="c">
. . . . . . . . syn292V (GTg),</div>
<div class="c">
. . . . . . . . 293K,</div>
<div class="c">
. . . . . . . . syn319I (ATc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">344M</span></b> [H5N1 <b><span style="color: red;">Fatality</span></b>],</div>
<div class="c">
. . . . . . . . syn348N (AAt),</div>
<div class="c">
. . . . . . . . 354L,</div>
<div class="c">
. . . . . . . . syn383Q (CAa),</div>
<div class="c">
. . . . . . . . syn384L (TTa),</div>
<div class="c">
. . . . . . . . syn396E (GAa),</div>
<div class="c">
. . . . . . . . syn427R (aGA),</div>
<div class="c">
. . . . . . . . syn430P (CCt),</div>
<div class="c">
. . . . . . . . syn440K (AAg),</div>
<div class="c">
. . . . . . . . syn482K (AAg),</div>
<div class="c">
. . . . . . . . syn502L (TTg),</div>
<div class="c">
. . . . . . . . 524N [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">ReEmergent</span></b> 2013],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: </div>
<div class="c">
. . . . . . . . . . . . . . . . <b>6</b>
Cases over <b>7</b> Sequences before 2013</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b> Count 04],</div>
<div class="c">
. . . . . . . . syn555R (AGa),</div>
<div class="c">
. . . . . . . . syn573N (AAt),</div>
<div class="c">
. . . . . . . . syn634S (TCt),</div>
<div class="c">
. . . . . . . . syn697L (TTa),</div>
<div class="c">
. . . . . . . . syn728Q (CAg),</div>
<div class="c">
. . . . . . . . 731I)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485776"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana07_C1_25F_2013_10_07<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/07/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID PB2 <a href="http://gisaid.org/EPI/485776" target="_blank">EPI485776</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150042" target="_blank">EPI_ISL_150042</a></div>
<div class="c">
. . . . . . . . 32 Polymorphisms (10 Amino and 22 Silent)</div>
<div class="c">
. . . . . . . . 54K,</div>
<div class="c">
. . . . . . . . 66I,</div>
<div class="c">
. . . . . . . . syn107S (AGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155S</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">156V</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>], </div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">TamiFlu Resistant</span></b>:</div>
<div class="c">
. . . . . . . . . . . . . Colorado11_C2_6M_2010_12_29<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/309836" target="_blank">EPI309836</a></div>
<div class="c">
. . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/88067" target="_blank">EPI_ISL_88067</a>],</div>
<div class="c">
. . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . 195N,</div>
<div class="c">
. . . . . . . . syn219P (CCg),</div>
<div class="c">
. . . . . . . . syn222G (GGt),</div>
<div class="c">
. . . . . . . . syn223G (GGg),</div>
<div class="c">
. . . . . . . . syn258S (AGc),</div>
<div class="c">
. . . . . . . . syn291G (GGt),</div>
<div class="c">
. . . . . . . . syn292V (GTg),</div>
<div class="c">
. . . . . . . . 293K,</div>
<div class="c">
. . . . . . . . syn319I (ATc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">344M</span></b> [H5N1 <b><span style="color: red;">Fatality</span></b>],</div>
<div class="c">
. . . . . . . . syn348N (AAt),</div>
<div class="c">
. . . . . . . . 354L,</div>
<div class="c">
. . . . . . . . syn383Q (CAa),</div>
<div class="c">
. . . . . . . . syn384L (TTa),</div>
<div class="c">
. . . . . . . . syn396E (GAa),</div>
<div class="c">
. . . . . . . . syn427R (aGA),</div>
<div class="c">
. . . . . . . . syn430P (CCt),</div>
<div class="c">
. . . . . . . . syn440K (AAg),</div>
<div class="c">
. . . . . . . . syn482K (AAg),</div>
<div class="c">
. . . . . . . . syn502L (TTg),</div>
<div class="c">
. . . . . . . . syn555R (AGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">560M</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">ReEmergent</span></b> 2013],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: </div>
<div class="c">
. . . . . . . . . . . . . . . . <b>5</b>
Cases over <b>5</b> Sequences</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . with <b><span style="color: #993300;">TamiFlu Resistance</span></b> Count 01],</div>
<div class="c">
<br /></div>
<div class="c">
. . . . . . . . syn573N (AAt),</div>
<div class="c">
. . . . . . . . syn634S (TCt),</div>
<div class="c">
. . . . . . . . syn697L (TTa),</div>
<div class="c">
. . . . . . . . syn728Q (CAg),</div>
<div class="c">
. . . . . . . . 731I)</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PB1</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI485785"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana08_C1_56F_2013_10_09<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/08/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID PB1 <a href="http://gisaid.org/EPI/485785" target="_blank">EPI485785</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150043" target="_blank">EPI_ISL_150043</a></div>
<div class="c">
. . . . . . . . 28 Polymorphisms (4 Amino and 24 Silent)</div>
<div class="c">
. . . . . . . . syn14A (GCa),</div>
<div class="c">
. . . . . . . . syn53G (GGg),</div>
<div class="c">
. . . . . . . . syn56T (ACa),</div>
<div class="c">
. . . . . . . . syn105N (AAt),</div>
<div class="c">
. . . . . . . . 113I,</div>
<div class="c">
. . . . . . . . syn122L (CTg),</div>
<div class="c">
. . . . . . . . 154D,</div>
<div class="c">
. . . . . . . . syn158N (AAc),</div>
<div class="c">
. . . . . . . . syn201T (ACt),</div>
<div class="c">
. . . . . . . . syn210Q (CAg),</div>
<div class="c">
. . . . . . . . syn282L (tTG),</div>
<div class="c">
. . . . . . . . syn295D (GAt),</div>
<div class="c">
. . . . . . . . syn333F (TTt),</div>
<div class="c">
. . . . . . . . syn346N (AAt),</div>
<div class="c">
. . . . . . . . syn377D (GAt),</div>
<div class="c">
. . . . . . . . syn396L (tTA),</div>
<div class="c">
. . . . . . . . 397M,</div>
<div class="c">
. . . . . . . . 435T,</div>
<div class="c">
. . . . . . . . syn457E (GAa),</div>
<div class="c">
. . . . . . . . syn539L (CTc),</div>
<div class="c">
. . . . . . . . syn550L (TTa),</div>
<div class="c">
. . . . . . . . syn573S (TCa),</div>
<div class="c">
. . . . . . . . syn579L (CTa),</div>
<div class="c">
. . . . . . . . syn600N (AAc),</div>
<div class="c">
. . . . . . . . syn632V (GTg),</div>
<div class="c">
. . . . . . . . syn635K (AAg),</div>
<div class="c">
. . . . . . . . syn692C (TGt),</div>
<div class="c">
. . . . . . . . syn730F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485777"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana07_C1_25F_2013_10_07<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/07/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID PB1 <a href="http://gisaid.org/EPI/485777" target="_blank">EPI485777</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150042" target="_blank">EPI_ISL_150042</a></div>
<div class="c">
. . . . . . . . 28 Polymorphisms (4 Amino and 24 Silent)</div>
<div class="c">
. . . . . . . . syn14A (GCa),</div>
<div class="c">
. . . . . . . . syn53G (GGg),</div>
<div class="c">
. . . . . . . . syn56T (ACa),</div>
<div class="c">
. . . . . . . . syn105N (AAt),</div>
<div class="c">
. . . . . . . . 113I,</div>
<div class="c">
. . . . . . . . syn122L (CTg),</div>
<div class="c">
. . . . . . . . 154D,</div>
<div class="c">
. . . . . . . . syn158N (AAc),</div>
<div class="c">
. . . . . . . . syn201T (ACt),</div>
<div class="c">
. . . . . . . . syn210Q (CAg),</div>
<div class="c">
. . . . . . . . syn282L (tTG),</div>
<div class="c">
. . . . . . . . syn295D (GAt),</div>
<div class="c">
. . . . . . . . syn333F (TTt),</div>
<div class="c">
. . . . . . . . syn346N (AAt),</div>
<div class="c">
. . . . . . . . syn377D (GAt),</div>
<div class="c">
. . . . . . . . syn396L (tTA),</div>
<div class="c">
. . . . . . . . 397M,</div>
<div class="c">
. . . . . . . . 435T,</div>
<div class="c">
. . . . . . . . syn457E (GAa),</div>
<div class="c">
. . . . . . . . syn539L (CTc),</div>
<div class="c">
. . . . . . . . syn550L (TTa),</div>
<div class="c">
. . . . . . . . syn573S (TCa),</div>
<div class="c">
. . . . . . . . syn579L (CTa),</div>
<div class="c">
. . . . . . . . syn600N (AAc),</div>
<div class="c">
. . . . . . . . syn632V (GTg),</div>
<div class="c">
. . . . . . . . syn635K (AAg),</div>
<div class="c">
. . . . . . . . syn692C (TGt),</div>
<div class="c">
. . . . . . . . syn730F (TTt))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI485783"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana08_C1_56F_2013_10_09<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/08/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID PA <a href="http://gisaid.org/EPI/485783" target="_blank">EPI485783</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150043" target="_blank">EPI_ISL_150043</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (6 Amino and 18 Silent)</div>
<div class="c">
. . . . . . . . syn33N (AAt),</div>
<div class="c">
. . . . . . . . syn68P (CCa),</div>
<div class="c">
. . . . . . . . 100I,</div>
<div class="c">
. . . . . . . . syn168R (AGa),</div>
<div class="c">
. . . . . . . . syn221P (CCa),</div>
<div class="c">
. . . . . . . . syn229F (TTc),</div>
<div class="c">
. . . . . . . . 266H,</div>
<div class="c">
. . . . . . . . syn270L (TTa),</div>
<div class="c">
. . . . . . . . syn273G (GGa),</div>
<div class="c">
. . . . . . . . syn291S (AGc),</div>
<div class="c">
. . . . . . . . syn300E (GAa),</div>
<div class="c">
. . . . . . . . 321K,</div>
<div class="c">
. . . . . . . . 330V,</div>
<div class="c">
. . . . . . . . 361R,</div>
<div class="c">
. . . . . . . . 362K,</div>
<div class="c">
. . . . . . . . syn417L (TTa),</div>
<div class="c">
. . . . . . . . syn517V (GTa),</div>
<div class="c">
. . . . . . . . syn529D (GAt),</div>
<div class="c">
. . . . . . . . syn530P (CCa),</div>
<div class="c">
. . . . . . . . syn534P (CCa),</div>
<div class="c">
. . . . . . . . syn549L (CTa),</div>
<div class="c">
. . . . . . . . syn555G (GGt),</div>
<div class="c">
. . . . . . . . syn597E (GAa),</div>
<div class="c">
. . . . . . . . syn662S (TCa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI485775"></a><o:p></o:p></div>
<div class="c">
. . . . Louisiana07_C1_25F_2013_10_07<b><span style="color: maroon;">_TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Louisiana/07/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">TamiFlu Resistant</span></b></div>
<div class="c">
. . . . . . . . GISAID PA <a href="http://gisaid.org/EPI/485775" target="_blank">EPI485775</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150042" target="_blank">EPI_ISL_150042</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (6 Amino and 19 Silent)</div>
<div class="c">
. . . . . . . . syn33N (AAt),</div>
<div class="c">
. . . . . . . . syn68P (CCa),</div>
<div class="c">
. . . . . . . . 100I,</div>
<div class="c">
. . . . . . . . syn168R (AGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn207I</span></b> (<b><span style="color: blue;">ATc</span></b>) <b><span style="color: blue;">mix</span></b> <b><span style="color: blue;">wt</span></b>,</div>
<div class="c">
. . . . . . . . syn221P (CCa),</div>
<div class="c">
. . . . . . . . syn229F (TTc),</div>
<div class="c">
. . . . . . . . 266H,</div>
<div class="c">
. . . . . . . . syn270L (TTa),</div>
<div class="c">
. . . . . . . . syn273G (GGa),</div>
<div class="c">
. . . . . . . . syn291S (AGc),</div>
<div class="c">
. . . . . . . . syn300E (GAa),</div>
<div class="c">
. . . . . . . . 321K,</div>
<div class="c">
. . . . . . . . 330V,</div>
<div class="c">
. . . . . . . . 361R,</div>
<div class="c">
. . . . . . . . 362K,</div>
<div class="c">
. . . . . . . . syn417L (TTa),</div>
<div class="c">
. . . . . . . . syn517V (GTa),</div>
<div class="c">
. . . . . . . . syn529D (GAt),</div>
<div class="c">
. . . . . . . . syn530P (CCa),</div>
<div class="c">
. . . . . . . . syn534P (CCa),</div>
<div class="c">
. . . . . . . . syn549L (CTa),</div>
<div class="c">
. . . . . . . . syn555G (GGt),</div>
<div class="c">
. . . . . . . . syn597E (GAa),</div>
<div class="c">
. . . . . . . . syn662S (TCa))</div>
<br />
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<div style="text-align: center;">
<span style="font-size: x-small;"><em><b><span style="color: #4c1130;">pH1N1</span></b> Influenza <b><span style="color: #274e13;">PolymeraseBasic2</span></b>, <b><span style="color: #274e13;">PolymeraseBasic1</span></b>, <b><span style="color: #274e13;">PolymeraseAcidic</span></b>, <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments<br />elucidated at 2013-11-20-01_51_10_493570 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2014. </em></span>
<br />
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2014 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
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NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-53267773711647899132014-01-06T03:02:00.000-06:002014-01-07T14:14:51.157-06:00pH1N1 Child Vaccine Escape: CDC Early 2013<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_03_31_CDC_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2014-01-06<br />
Last Update : 2014-01-06</span><br />
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2013_03_31_CDC_Map.html" target="_blank"><img alt="pH1N1 Child Vaccine Escape: CDC Early 2013" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2013_03_31_CDC_Map.html" target="_blank">Geographic Distribution</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
41 Cases over 43 Sequences<br />
<hr style="width: 35%;" />
<br /></div>
In the 30 days covering 2013-02-28 to 2013-03-29, the <span style="color: #783f04;"><b>United States CDC</b></span> released a total of 43 <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> sequences at <strong>GISAID </strong>on 41 human cases<strong> </strong>sampled from October 2012 to February 2013. Geographic surveillance includes <b>America,</b> <b>Africa, Asia </b>and<b> Russia. </b>Although <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> in most locales during the 2012-2013 season was the <b><span style="color: #783f04;">minority</span></b> serotype, the sequences in this Analytic Report describe a high level of human-infective diversity and an ease of avian genetic acquisition, including multiple instances demonstrating concentrated transport of <b><span style="color: #660000;">High-CFR</span></b> <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1 </span><span style="color: #783f04;">Upsilon</span></b> polymorphisms onto single sequences.<br />
<br />
Widely recognised <b><span style="color: #660000;">Immune Escape</span></b> parameters are seen in 13 of the sequences, 7 from children aged 10 years old or younger. <b><span style="color: #783f04;">CrossClade</span></b> events occur on 6 sequences across 4 distinct clade combinations. <b><span style="color: #783f04;">Host Switching</span></b> polymorphisms are observed in this set. Co-infection and / or quasi-species are suggested by 47 instances of ambiguity on the <b><span style="color: #274e13;">Hemagglutinin</span></b> and <b><span style="color: #274e13;">Neuraminidase</span></b> segments.<br />
<br />
As a minority strain, <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> continued to aggressively mature and diversify by conglomerating <b><span style="color: #783f04;">early pandemic</span></b> severity markers (geographically dispersed in 2009) onto single lineages in 2013 <b><span style="color: #783f04;">setting the stage</span></b> for the late summer 2013 upwelling. Those <a href="http://pf11.blogspot.com/2013/12/texas-ha-225-receptor-binding-variance.html" target="_blank">highly avian</a> <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1 </span></b>lineages that developed during a minority phase in the 2012 season are <b><span style="color: #660000;">now</span></b> escaping vaccines, <b><span style="color: #660000;">evading diagnostics</span></b> and resisting antivirals at a season-tilting rate.<br />
<br />
Expect <a href="http://pf11.blogspot.com/2009/11/norway-sequence-with-225g-mixture-also.html" target="_blank">flashfires</a> as in <a href="http://pf11.blogspot.com/2014/01/ph1n1-texas-fatality-by-county_4.html" target="_blank">Texas</a> with extended illnesses, systemic morbidity and <b><span style="color: #660000;">excess focal mortality</span></b>.<br />
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Key Severity Indicators</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 50%;"><table align="center" border="0px" cellpadding="0px" cellspacing="0px" style="padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="float: center; width: 100%;">
<td colspan="3" style="vertical-align: top;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 20%;" title="Host Transition">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td>Host Transition</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Status</th></tr>
<tr style="font-size: 100%; text-align: center;"><td> <b><span style="color: sienna; text-shadow: darkslategray 1px .5px .5px;">PROBABLE</span></b> </td></tr>
</tbody></table>
</td></tr>
<tr><td><br /></td></tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 30%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="Vaccine Escape Diversity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Vaccine Escape Diversity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">GenoType</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 156E</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 157E</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 158E</td><td style="text-align: center;">03</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 218T</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 219V</td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 225G</td><td style="text-align: center;">04</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 40%;"><table align="center" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 80%;" title="Ambiguity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3">Ambiguity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Segment</th><th style="text-align: center;">Type</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">Hemagglutinin</span></b> </td><td> Binary </td><td style="text-align: center;">32</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">Neuraminidase</span></b> </td><td> Binary </td><td style="text-align: center;">15</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 30%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="Receptor Binding Variance">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Receptor Binding Variance</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Revision</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">187N</span></b> </td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">190G</span></b> </td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">193R</span></b> </td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">194I</span></b> </td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">198T</span></b> </td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b> </td><td style="text-align: center;">04</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">226R</span></b> </td><td style="text-align: center;">05</td></tr>
</tbody></table>
</td></tr>
</tbody></table>
</td></tr>
<tr style="float: center;">
<td colspan="3" style="vertical-align: top;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 84%;" title="Vaccine Escape Sequences">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4">Vaccine Escape Sequences</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Date</th><th style="text-align: center;">Name</th><th style="text-align: center;">Finding</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> 2013_01_22 </td><td> California09_E3_<b><span style="color: #783f04;">10F</span></b>_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: darkgreen;">HA</span> <span style="color: blue;">225G</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439223" style="font-size: 80%;" target="_blank">EPI439223</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_22 </td><td> NewYork02_E3_28M_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: darkgreen;">HA</span> <span style="color: blue;">225G</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439220" style="font-size: 80%;" target="_blank">EPI439220</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_09 </td><td> Japan1419_E3_29M_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: darkgreen;">HA</span> <span style="color: blue;">225G</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439994" style="font-size: 80%;" target="_blank">EPI439994</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_06 </td><td> NewMexico02_M1C2_<b><span style="color: #783f04;">4M</span></b>_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: red;">Low Reactor</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439239" style="font-size: 80%;" target="_blank">EPI439239</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_05 </td><td> HongKong101_C3C1_<b><span style="color: #783f04;">2M</span></b>_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: red;">Low Reactor</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439254" style="font-size: 80%;" target="_blank">EPI439254</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_12_20 </td><td> Minnesota34_M1C1_<b><span style="color: #783f04;">1M</span></b>_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: red;">Low Reactor</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI426455" style="font-size: 80%;" target="_blank">EPI426455</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_12_19 </td><td> Tanzania2131_C2_<b><span style="color: #783f04;">1F</span></b>_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: red;">Low Reactor</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI440929" style="font-size: 80%;" target="_blank">EPI440929</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_12_18 </td><td> HongKong9232_C5C1_49F_<b><span style="color: red;">VxX</span></b> </td><td> <b><span style="color: red;">Low Reactor</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439312" style="font-size: 80%;" target="_blank">EPI439312</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_12_05 </td><td> Tanzania326_E3_<b><span style="color: #783f04;">2M</span></b>_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: darkgreen;">HA</span> <span style="color: blue;">225G</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI440003" style="font-size: 80%;" target="_blank">EPI440003</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_11_28 </td><td> Tanzania309_C2_<b><span style="color: #783f04;">3M</span></b>_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: red;">Low Reactor</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI426450" style="font-size: 80%;" target="_blank">EPI426450</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_11_27 </td><td> Tanzania307_E3_36F_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: darkgreen;">HA</span> <span style="color: blue;">225G</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439242" style="font-size: 80%;" target="_blank">EPI439242</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_10_16 </td><td> CoteDIvoire1186_C2_xF_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: red;">Low Reactor</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI426441" style="font-size: 80%;" target="_blank">EPI426441</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_10_16 </td><td> CoteDIvoire1186_xF_<b><span style="color: red;">VxX</span></b></td><td title="Perfect Identity to Vaccine Escape HI Assay Low Reactor, EPI426441"> =<b><span style="color: red;">Low Reactor</span></b> </td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI432618" style="font-size: 80%;" target="_blank">EPI432618</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">CrossClade Analytics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="CrossClade CDC Sequences in Winter 2012-2013">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4"><span style="color: #4c1130;">pH1N1</span><br />
CrossClade CDC Sequences in Winter 2012-2013</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Date</th><th style="text-align: center;">Name</th><th style="text-align: center;">Clade<br />
Name</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> 2013_02_05 </td><td> Missouri03_C1_20F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439225" style="font-size: 80%;" target="_blank">EPI439225</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_10 </td><td> HongKong145_C3C1_61M </td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
186P_188T_208K </td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439214" style="font-size: 80%;" target="_blank">EPI439214</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_09 </td><td> Japan1419_E3_29M<b><span style="color: red;">_VxX </span></b></td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
186P_188T</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439994" style="font-size: 80%;" target="_blank">EPI439994</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_04 </td><td> NewMexico01_M1C2_35F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439231" style="font-size: 80%;" target="_blank">EPI439231</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_03 </td><td> Oman21_C2_24F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_189T</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439465" style="font-size: 80%;" target="_blank">EPI439465</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012_12_31 </td><td> Oman03_C2_<b><span style="color: #783f04;">17F</span></b></td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_189T</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439515" style="font-size: 80%;" target="_blank">EPI439515</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="10px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 3px; padding-right: 3px; padding-top: 2px; width: 100%;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="2">Isolate Metrics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 48%;"><table align="center" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 60%;" title="Calendar 2013">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Calendar</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Month</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2013 February </td><td>11</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2013 January </td><td>15</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2012 December </td><td>09</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2012 November </td><td>06</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2012 October </td><td>02</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 52%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 58%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">CladeName</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">35</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_189T</td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> UnCladed</td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
186P_188T_208K </td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
186P_188T</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td>
</tr>
<tr style="float: center;">
<td colspan="2" style="vertical-align: middle;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 45%;" title="Age / Gender Dynamic">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Age / Gender Dynamic</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Observation</th><th style="text-align: center;">Percent</th></tr>
<tr style="font-size: 90%;"><td> Child or <br />
<b><span style="color: #783f04;"> ChildBearing Age</span></b> female</td><td style="text-align: center;"><b>71%</b></td></tr>
<tr style="font-size: 90%;"><td> Child Aged 17 or Under</td><td style="text-align: center;"><b>47%</b></td></tr>
<tr style="font-size: 90%;"><td> Child Aged 12 or Under</td><td style="text-align: center;">42%</td></tr>
<tr style="font-size: 90%;"><td> Child Aged 04 or Under</td><td style="text-align: center;">31%</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI439517"></a><o:p></o:p></div>
<div class="c">
. . . . Alabama04_C1C1_54M_2013_02_25 (</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . A/Alabama/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439517" target="_blank">EPI439517</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138730" target="_blank">EPI_ISL_138730</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">92P mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Novel</span></b>],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn466G (GGt) [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439481"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaStPetersburg42_C1C1_2013_02_20 (</div>
<div class="c">
. . . . . . . . A/St. Petersburg/42/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439481" target="_blank">EPI439481</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138735" target="_blank">EPI_ISL_138735</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (8 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">9S</span></b>,</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439471"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaStPetersburg37_C1C1_58x_2013_02_20 (</div>
<div class="c">
. . . . . . . . A/St. Petersburg/37/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">10H</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439471" target="_blank">EPI439471</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138731" target="_blank">EPI_ISL_138731</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">10H</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn58C (TGc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">144T</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439458"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania04_C1_52M_2013_02_14 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439458" target="_blank">EPI439458</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138724" target="_blank">EPI_ISL_138724</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],<o:p></o:p></div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439473"></a><o:p></o:p></div>
<div class="c">
. . . . NorthCarolina03_C1_66M_2013_02_13 (</div>
<div class="c">
. . . . . . . . A/North Carolina/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439473" target="_blank">EPI439473</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138732" target="_blank">EPI_ISL_138732</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn266S (TCc) [<b><span style="color: maroon;">H7N9</span></b> Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . Third Base Donor <b><span style="color: blue;">266V</span></b> <b><span style="color: blue;">GTc</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439463"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaStPetersburg19_E2E1_<b><span style="color: #993300;">1x</span></b>_2013_02_13 (</div>
<div class="c">
. . . . . . . . A/St. Petersburg/19/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439463" target="_blank">EPI439463</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138726" target="_blank">EPI_ISL_138726</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn461K (AAa) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439255"></a><o:p></o:p></div>
<div class="c">
. . . . Kentucky02_M1C1_<b><span style="color: #993300;">12M</span></b>_2013_02_08 (</div>
<div class="c">
. . . . . . . . A/Kentucky/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">199N</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439255" target="_blank">EPI439255</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138673" target="_blank">EPI_ISL_138673</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (12 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#6M</span></b> [H9N2 <b><span style="color: #993300;">Human</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">3T</span></b> [<b><span style="color: purple;">pH1N1</span></b> Kyrgyzstan220_C1_2013_01_08],</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">39E </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn122K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">141N</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type First Base Donor <st1:stockticker>AGA</st1:stockticker>],</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn275V (GTt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn337A (GCt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn488D (GAt),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439475"></a><o:p></o:p></div>
<div class="c">
. . . . Nebraska05_C1_<b><span style="color: #993300;">1F</span></b>_2013_02_06 (</div>
<div class="c">
. . . . . . . . A/Nebraska/05/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439475" target="_blank">EPI439475</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138733" target="_blank">EPI_ISL_138733</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (8 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn112S (TCc) [avH1N1],</div>
<div class="c">
. . . . . . . . syn124S (AGc) [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],<o:p></o:p></div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn335A (GCt) [H7N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439225"></a><o:p></o:p></div>
<div class="c">
. . . . Missouri03_C1_20F_2013_02_05 (</div>
<div class="c">
. . . . . . . . A/Missouri/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439225" target="_blank">EPI439225</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138659" target="_blank">EPI_ISL_138659</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn193S (AGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b> [<b><span style="color: #993300;">H7N9</span></b> Avian wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439245"></a><o:p></o:p></div>
<div class="c">
. . . . Utah04_C1_<b><span style="color: #993300;">2M</span></b>_2013_02_03 (</div>
<div class="c">
. . . . . . . . A/Utah/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439245" target="_blank">EPI439245</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138667" target="_blank">EPI_ISL_138667</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (7 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn350G (GGg),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn424Y (TAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439467"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana03_M1C1_<b><span style="color: #993300;">4M</span></b>_2013_02_02 (</div>
<div class="c">
. . . . . . . . A/Indiana/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439467" target="_blank">EPI439467</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138728" target="_blank">EPI_ISL_138728</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (7 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439223"></a><o:p></o:p></div>
<div class="c">
. . . . California09_E3_<b><span style="color: #993300;">10F</span></b>_2013_01_22<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/California/09/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439223" target="_blank">EPI439223</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138658" target="_blank">EPI_ISL_138658</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (11 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#6M</span></b> [H9N2 <b><span style="color: #993300;">Human</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn122K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn127P (CCa),</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn171D (GAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">200T mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn275V (GTt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn337A (GCt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn488D (GAt),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI439220"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork02_E3_28M_2013_01_22<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New York/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b>US Military
Cluster, 2 Adults & 2 Children<o:p></o:p></b></div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439220" target="_blank">EPI439220</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138657" target="_blank">EPI_ISL_138657</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (9 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q [avH1N1],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . syn244T (ACg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],<o:p></o:p></div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn297N (AAc)</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439217"></a><o:p></o:p></div>
<div class="c">
. . . . Washington05_E3_21F_2013_01_18 (</div>
<div class="c">
. . . . . . . . A/Washington/05/2013</div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439217" target="_blank">EPI439217</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138656" target="_blank">EPI_ISL_138656</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">3S</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn31H (CAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn77S (AGt) [avH1N1],</div>
<div class="c">
. . . . . . . . syn135V (GTg) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166N</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [<a href="http://pf11.blogspot.com/2013/11/triple-polymorphism-prediction-of-ha.html" target="_blank">Prediction</a>: <b><span style="color: #993300;">CrossClade</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">166N</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn476N (AAt),</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H7N7])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439249"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana02_C1_23F_2013_01_14 (</div>
<div class="c">
. . . . . . . . A/Indiana/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">45H </span></b>and <b><span style="color: blue;">52N</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439249" target="_blank">EPI439249</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138669" target="_blank">EPI_ISL_138669</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (9 Amino and 17 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#6M</span></b> [H9N2 <b><span style="color: #993300;">Human</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . syn#5L (CTg) [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn122K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">141Q</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type Third Base Donor <st1:stockticker>AGA</st1:stockticker>],</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn189A</span></b> <b><span style="color: blue;">(GCc)</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn212K (AAa) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn223V (GTa)</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">272E</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>1</b>
Case over <b>1</b> Sequence 2010-01-04],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn330R (AGg)</span></b> [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . syn337A (GCt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn515Q (CAa) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn524A (GCt) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn538F (TTt) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn546L (tTA) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439228"></a><o:p></o:p></div>
<div class="c">
. . . . ThailandSuratThani16_C1C1_xM_2013_01_11 (</div>
<div class="c">
. . . . . . . . A/Surat Thani/16/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">141R</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">300S</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">11S<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">385S</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439228" target="_blank">EPI439228</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138660" target="_blank">EPI_ISL_138660</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (11 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#8L</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn30T (ACt) [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>], </div>
<div class="c">
. . . . . . . . syn58C (TGc),</div>
<div class="c">
. . . . . . . . syn61A (GCg) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn87S (AGc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn118E (GAa) </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">122N</span></b> [zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">141R</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wild type], </div>
<div class="c">
. . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">252L</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Clade5: 208K_219V</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">300S</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wild type],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . syn334G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn375I (ATc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">446E</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type First Base Donor GAC],</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 523A)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439214"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong145_C3C1_61M_2013_01_10 (</div>
<div class="c">
. . . . . . . . A/Hong Kong/145/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">14S</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 186P, 188T & 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439214" target="_blank">EPI439214</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138655" target="_blank">EPI_ISL_138655</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (12 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#6M</span></b> [H9N2 <b><span style="color: #993300;">Human</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],</div>
<div class="c">
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">14S mix wt</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wild type],</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn122K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn127P (CCa),</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn171D (GAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">186P mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b> [<b><span style="color: #993300;">H7N9</span></b> Avian wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn275V (GTt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn337A (GCt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn488D (GAt),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439994"></a><o:p></o:p></div>
<div class="c">
. . . . Japan1419_E3_29M_2013_01_09<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Japan/1419/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">44I</span></b></div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 186P & 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439994" target="_blank">EPI439994</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138662" target="_blank">EPI_ISL_138662</a></div>
<div class="c">
. . . . . . . . 30 Polymorphisms (13 Amino and 17 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#12E mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn#6L (tTG),</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">44I</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn53L (TTa),</div>
<div class="c">
. . . . . . . . syn56G (GGa)<b><span style="color: maroon;"> </span></b>[<b><span style="color: maroon;">H7N9</span></b> Avian wild type],</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . syn150N (AAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166N</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [<a href="http://pf11.blogspot.com/2013/11/triple-polymorphism-prediction-of-ha.html" target="_blank">Prediction</a>: <b><span style="color: #993300;">CrossClade</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">166N</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">186P mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn190D (GAt),</div>
<div class="c">
. . . . . . . . syn196Q (CAa),</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">274T</span></b>,</div>
<div class="c">
. . . . . . . . syn293L (CTa),</div>
<div class="c">
. . . . . . . . syn309Y (TAc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn397G (GGc) mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn440Y (TAt),</div>
<div class="c">
. . . . . . . . syn443S (TCg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">477M</span></b>,</div>
<div class="c">
. . . . . . . . syn482V (GTt),</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426458"></a><o:p></o:p></div>
<div class="c">
. . . . Tennessee01_C1_37M_2013_01_09 (</div>
<div class="c">
. . . . . . . . A/Tennessee/01/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426458" target="_blank">EPI426458</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136469" target="_blank">EPI_ISL_136469</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn35L (CTc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],<o:p></o:p></div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439478"></a><o:p></o:p></div>
<div class="c">
. . . . Kyrgyzstan220_C1_2013_01_08 (</div>
<div class="c">
. . . . . . . . A/Kyrgyzstan/220/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">482I</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">313H</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439478" target="_blank">EPI439478</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138734" target="_blank">EPI_ISL_138734</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">3T</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn361G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">482I</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn507K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439239"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico02_M1C2_<b><span style="color: #993300;">4M</span></b>_2013_01_06<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">190G</span></b> <a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI439239">GoFE</a></div>
<div class="c">
. . . . . . . . ~ <b><span style="color: #003300;">HA</span></b> Minnesota34_M1C1_<b><span style="color: #993300;">1M</span></b>_2012_12_20<b><span style="color: red;">_VxX </span></b>[<a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI426455" target="_blank">EPI426455</a>]</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439239" target="_blank">EPI439239</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138664" target="_blank">EPI_ISL_138664</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (11 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E</span></b>,</div>
<div class="c">
. . . . . . . . syn161Y (TAt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">190G</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>17</b>
Cases over <b>19</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html">map</a>),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Fatalities</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escapes</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: #993300;">Infants</span></b>],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">280A</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],<o:p></o:p></div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">452I</span></b> [<b><span style="color: purple;">pH1N1</span></b> ReEmergent 2013],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>25</b>
Cases over <b>27</b> Sequences,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escape </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E </span></b>Count 02,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escape </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escape </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225N</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . US Military,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: #993300;">Child 6 or Under </span></b>Count 05],</div>
<div class="c">
. . . . . . . . . . [H13N2],</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439254"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong101_C3C1_<b><span style="color: #993300;">2M</span></b>_2013_01_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Hong Kong/101/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> with Strong Avian Influence</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> Identity 19/22 [<a href="http://gisaid.org/EPI/426460" target="_blank">EPI426460</a>]</div>
<div class="c">
. . . . . . . . . . . . . KoreaGyeongnam3526_C2C2_<b><span style="color: #993300;">13F</span></b>_2012_12_19</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity 16/17 [<a href="http://gisaid.org/EPI/426459" target="_blank">EPI426459</a>]</div>
<div class="c">
. . . . . . . . . . . . . KoreaGyeongnam3526_C2C2_<b><span style="color: #993300;">13F</span></b>_2012_12_19</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity with <b><span style="color: maroon;">High-</span></b><st1:stockticker><b><span style="color: maroon;">CFR</span></b></st1:stockticker>
<b><span style="color: purple;">pH1N1</span></b>
<b><span style="color: #993300;">Upsilon</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439254" target="_blank">EPI439254</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138672" target="_blank">EPI_ISL_138672</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">38G </span></b>[<b><span style="color: #993300;">Emergent H7N9</span></b> wild type Second Base Donor <st1:stockticker>CGA</st1:stockticker>],</div>
<div class="c">
. . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn47L (CTg) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn91G (GGg) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn103E (GAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA </span><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn105R (AGg) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn181G (GGa),</div>
<div class="c">
. . . . . . . . syn183H (CAt),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">218T mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn378I (ATc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn384S (TCa) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn447N (AAt),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463T</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> LookAside<sub>d2</sub> wild
type],</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426447"></a><o:p></o:p></div>
<div class="c">
. . . . Texas07_C1_<b><span style="color: #993300;">1F</span></b>_2013_01_05 (</div>
<div class="c">
. . . . . . . . A/Texas/07/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Neuraminidase </span>nu</b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426447" target="_blank">EPI426447</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136465" target="_blank">EPI_ISL_136465</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">127L</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>4</b>
Cases over <b>4</b> Sequences (2009-2010)],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">265E</span></b> [H1N1 WilsonSmith 1933],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn361G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439251"></a><o:p></o:p></div>
<div class="c">
. . . . Maryland02_CXC1_25F_2013_01_04 (</div>
<div class="c">
. . . . . . . . A/Maryland/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439251" target="_blank">EPI439251</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138670" target="_blank">EPI_ISL_138670</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],<o:p></o:p></div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439231"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico01_M1C2_35F_2013_01_04 (</div>
<div class="c">
. . . . . . . . A/New Mexico/01/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 208K</span></b></div>
<div class="c">
. . . . . . . . ~ CaliforniaNHRC386820_2013_01_07 [<a href="http://gisaid.org/EPI/493739" target="_blank">EPI493739</a>]</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439231" target="_blank">EPI439231</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138661" target="_blank">EPI_ISL_138661</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (10 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">198T</span></b> [<b><span style="color: maroon;">ReEmergent</span></b> 2013 on new background],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>7</b>
Cases over <b>9</b> Sequences,</div>
<div class="c">
. . . . . . . . . . . . . . . 3 US Military in 3 geographies on 2
backgrounds],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b> [<b><span style="color: #993300;">H7N9</span></b> Avian wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439465"></a><o:p></o:p></div>
<div class="c">
. . . . Oman21_C2_24F_2013_01_03 (</div>
<div class="c">
. . . . . . . . A/Oman/21/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 189T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439465" target="_blank">EPI439465</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138727" target="_blank">EPI_ISL_138727</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (10 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">189T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">210C mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">212T mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn313T (ACc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439515"></a><o:p></o:p></div>
<div class="c">
. . . . Oman03_C2_<b><span style="color: #993300;">17F</span></b>_2012_12_31 (</div>
<div class="c">
. . . . . . . . A/Oman/03/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 189T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439515" target="_blank">EPI439515</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138729" target="_blank">EPI_ISL_138729</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (10 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">189T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">218V</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn313T (ACc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">437I mix wt</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> LookAside<sub>d</sub> wild
type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426444"></a><o:p></o:p></div>
<div class="c">
. . . . Kentucky23_M1C1_37M_2012_12_25 (</div>
<div class="c">
. . . . . . . . A/Kentucky/23/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">#2L</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">313H</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426444" target="_blank">EPI426444</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136464" target="_blank">EPI_ISL_136464</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#2L</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian <st1:place>North America</st1:place>],</div>
<div class="c">
. . . . . . . . . .[<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . .[avH1N1], </div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn111V (GTa)</span></b> [avH1N1<sub>farm</sub>, zH3N2],</div>
<div class="c">
. . . . . . . . syn158G (GGg),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn361G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn507K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439347"></a><o:p></o:p></div>
<div class="c">
. . . . India2192_C3_2012_12_22 (</div>
<div class="c">
. . . . . . . . A/India/2192/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">298V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439347" target="_blank">EPI439347</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138692" target="_blank">EPI_ISL_138692</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">54N</span></b> [zH3N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">298V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn321L (TTa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426455"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota34_M1C1_<b><span style="color: #993300;">1M</span></b>_2012_12_20<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Minnesota/34/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">190G</span></b> <a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI426455">GoFE</a></div>
<div class="c">
. . . . . . . . ~ <b><span style="color: #003300;">HA</span></b> NewMexico02_M1C2_<b><span style="color: #993300;">4M</span></b>_2013_01_06<b><span style="color: red;">_VxX</span></b> [<a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI439239" target="_blank">EPI439239</a>]</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426455" target="_blank">EPI426455</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136468" target="_blank">EPI_ISL_136468</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">124I</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E</span></b>,</div>
<div class="c">
. . . . . . . . syn161Y (TAt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">190G</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>17</b>
Cases over <b>19</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html">map</a>),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Fatalities</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escapes</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: #993300;">Infants</span></b>],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI432620"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania2131_<b><span style="color: #993300;">1F</span></b>_2012_12_19 (</div>
<div class="c">
. . . . . . . . A/Tanzania/2131/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/432620" target="_blank">EPI432620</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/137434" target="_blank">EPI_ISL_137434</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (7 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])<br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI440929"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania2131_<b><span style="color: #993300;">C2</span></b>_<b><span style="color: #993300;">1F</span></b>_2012_12_19<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/2131/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/440929" target="_blank">EPI440929</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136467" target="_blank">EPI_ISL_136467</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (10 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">157E mix wt</span></b> [H10N7],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219M mix wt</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type Third Base Donor <st1:stockticker><b><span style="color: blue;">GCG</span></b></st1:stockticker>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA </span><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">364H mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426460"></a><o:p></o:p></div>
<div class="c">
. . . . KoreaGyeongnam3526_C2C2_<b><span style="color: #993300;">13F</span></b>_2012_12_19 (</div>
<div class="c">
. . . . . . . . A/Gyeongnam/3526/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Deep Lung</span></b> Binding Enhancer <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">194I<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">106K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> with Strong Avian Influence</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> Identity 19/23 [<a href="http://gisaid.org/EPI/439254" target="_blank">EPI439254</a>]</div>
<div class="c">
. . . . . . . . . . . . . HongKong101_C3C1_<b><span style="color: #993300;">2M</span></b>_2013_01_05<b><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity 16/19 [<a href="http://gisaid.org/EPI/440004" target="_blank">EPI440004</a>]</div>
<div class="c">
. . . . . . . . . . . . . HongKong101_C3C1_<b><span style="color: #993300;">2M</span></b>_2013_01_05<b><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity with <b><span style="color: maroon;">High-</span></b><st1:stockticker><b><span style="color: maroon;">CFR</span></b></st1:stockticker>
<b><span style="color: purple;">pH1N1</span></b>
<b><span style="color: #993300;">Upsilon</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426460" target="_blank">EPI426460</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136470" target="_blank">EPI_ISL_136470</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (8 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn34N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn47L (CTg) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn103E (GAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA </span><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn105R (AGg) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">106K mix wt</span></b> [H7N7 Equine Host Switching],</div>
<div class="c">
. . . . . . . . syn181G (GGa),</div>
<div class="c">
. . . . . . . . syn183H (CAt),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">194I mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn223V (GTa)</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn378I (ATc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn384S (TCa) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn436R (AGg) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn447N (AAt),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463T</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> LookAside<sub>d2</sub> wild
type],</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439312"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong9232_C5C1_49F_2012_12_18<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Hong Kong/9232/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">141R<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439312" target="_blank">EPI439312</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138683" target="_blank">EPI_ISL_138683</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (10 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#12E</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . [H9N2], </div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">41D</span></b> [<b><span style="color: #993300;">H7N9</span></b> Avian First Base Donor <b><span style="color: blue;">GTC</span></b>, <b><span style="color: blue;">GTT</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA </span><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . syn61A (GCg) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn118E (GAa) </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">141R</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wild type], </div>
<div class="c">
. . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn169I (ATc),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn184H (CAc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">187N mix wt</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">252L</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Clade5: 208K_219V</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . syn257A (GCt),</div>
<div class="c">
. . . . . . . . syn334G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">454T</span></b>,</div>
<div class="c">
. . . . . . . . syn511T (ACg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440003"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania326_E3_<b><span style="color: #993300;">2M</span></b>_2012_12_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/326/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">476D</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/440003" target="_blank">EPI440003</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138671" target="_blank">EPI_ISL_138671</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">476D</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439247"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania315_E3_30F_2012_11_30 (</div>
<div class="c">
. . . . . . . . A/Tanzania/315/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439247" target="_blank">EPI439247</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138668" target="_blank">EPI_ISL_138668</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn346G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439460"></a><o:p></o:p></div>
<div class="c">
. . . . Kenya2917_X1C1_<b><span style="color: #993300;">9F</span></b>_2012_11_28 (</div>
<div class="c">
. . . . . . . . A/Kenya/2917/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439460" target="_blank">EPI439460</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138725" target="_blank">EPI_ISL_138725</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (7 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn33V (GTc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426450"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania309_C2_<b><span style="color: #993300;">3M</span></b>_2012_11_28<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/309/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Deep Lung</span></b> Binding Enhancer <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">193R<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">193R</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426450" target="_blank">EPI426450</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136466" target="_blank">EPI_ISL_136466</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">156E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">193R mix wt</span></b> [H7N7 <b><span style="color: maroon;">Host Switching</span></b>:</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . Equine & Sea Mammal],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn305K (AAg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439242"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania307_E3_36F_2012_11_27<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/307/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Deep Lung</span></b> Binding Enhancer <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">194I<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439242" target="_blank">EPI439242</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138666" target="_blank">EPI_ISL_138666</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (10 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn39K (AAa) mix wt </span></b>[<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . [H7N7], </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">194I mix wt </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn239P (CCa) mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439241"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania308_E3_35M_2012_11_27 (</div>
<div class="c">
. . . . . . . . A/Tanzania/308/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439241" target="_blank">EPI439241</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138665" target="_blank">EPI_ISL_138665</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (8 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn305K (AAg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439236"></a><o:p></o:p></div>
<div class="c">
. . . . Laos839_C1C2_<b><span style="color: #993300;">12F</span></b>_2012_11_12 (</div>
<div class="c">
. . . . . . . . A/Laos/839/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">141R</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439236" target="_blank">EPI439236</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138663" target="_blank">EPI_ISL_138663</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (10 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#2L</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . ,[avH1N1], </div>
<div class="c">
. . . . . . . . . ,[H7N7],</div>
<div class="c">
. . . . . . . . syn30T (ACt) [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>], </div>
<div class="c">
. . . . . . . . syn61A (GCg) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn118E (GAa) </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">141R</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wild type], </div>
<div class="c">
. . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">163M mix wt</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> LookAside<sub>d</sub> wild
type],</div>
<div class="c">
. . . . . . . . syn173G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">205E mix wt</span></b> [H7N7],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">252L</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Clade5: 208K_219V</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">263S mix wt</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wild type],</div>
<div class="c">
. . . . . . . . syn291T (ACt),</div>
<div class="c">
. . . . . . . . syn334G (GGa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI432618"></a><o:p></o:p></div>
<div class="c">
. . . . CoteDIvoire1186_xF_2012_10_16<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Cote D'Ivoire/1186/2012</div>
<div class="c">
. . . . . . . . Perfect Identity to</div>
<div class="c">
. . . . . . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span> [</b><a href="http://pf11.blogspot.com/2014/01/ph1n1-child-vaccine-escape-cdc-early.html#EPI426441" target="_blank">EPI426441</a><b>]</b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">syn99I (ATt)</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Off-Clade<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/432618" target="_blank">EPI432618</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/137433" target="_blank">EPI_ISL_137433</a></div>
<div class="c">
. . . . . . . . 34 Polymorphisms (11 Amino and 23 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn54H (CAc),</div>
<div class="c">
. . . . . . . . syn56G (GGc) [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: 1<b>7</b>
Cases over 1<b>9</b> Sequences],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>, zH3N2, 1918],<o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn99I (ATt)</span></b> [Host Switching Potential],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7 Sea Mammal],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn122K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate:<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhou1_<b><span style="color: maroon;">LLC</span></b>1E3_35F_2013_03_15<b><span style="color: red;">_f</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . <u><span style="color: blue;"><a href="http://eh7n9.blogspot.com/2013/12/emergent-h7n9-vaccine-candidate.html">Deposit
Report</a></span></u><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <u><span style="color: blue;"><a href="http://gisaid.org/EPI/486492">EPI486492</a></span></u><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <u><span style="color: blue;"><a href="http://gisaid.org/EPI_ISL/150198">EPI_ISL_150198</a></span></u><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region> NIID <b>Lab-Derived</b>,<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H3N2 Human Seasonal],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [WilsonSmith 1933],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [1918],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219V</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . syn244T (ACt),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor <b><span style="color: blue;">266V</span></b> <b><span style="color: blue;">gTC</span></b>, <b><span style="color: blue;">gTT</span></b>],</div>
<div class="c">
. . . . . . . . syn276H (CAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . .
[avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn295F (TTc) [<b><span style="color: #993300;">H7N9</span></b> Avian wild type],</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn331G (GGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn337A (GCt)</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . .
[<b>Pennsylvania07_C1_<span style="color: #993300;">1F</span>_2013_10_02</b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . .
<b>DominicanRep7626_C2_34F_2013_06_15<span style="color: #993300;">_TmX</span><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn475D (GAc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">497R</span></b> [avH1N1<sub>farm</sub>, zH5N1, H9N2],</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426441"></a><o:p></o:p></div>
<div class="c">
. . . . CoteDIvoire1186_C2_xF_2012_10_16<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Cote D'Ivoire/1186/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> HI Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">syn99I (ATt)</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426441" target="_blank">EPI426441</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136463" target="_blank">EPI_ISL_136463</a></div>
<div class="c">
. . . . . . . . 34 Polymorphisms (11 Amino and 23 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn54H (CAc),</div>
<div class="c">
. . . . . . . . syn56G (GGc) [<b><span style="color: maroon;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: 1<b>7</b>
Cases over 1<b>9</b> Sequences],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>, zH3N2, 1918],<o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn99I (ATt)</span></b> [Host Switching Potential],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [H7N7 Sea Mammal],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn122K (AAa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate:<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhou1_<b><span style="color: maroon;">LLC</span></b>1E3_35F_2013_03_15<b><span style="color: red;">_f</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . <u><span style="color: blue;"><a href="http://eh7n9.blogspot.com/2013/12/emergent-h7n9-vaccine-candidate.html">Deposit
Report</a></span></u><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <u><span style="color: blue;"><a href="http://gisaid.org/EPI/486492">EPI486492</a></span></u><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <u><span style="color: blue;"><a href="http://gisaid.org/EPI_ISL/150198">EPI_ISL_150198</a></span></u><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region> NIID <b>Lab-Derived</b>,<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H3N2 Human Seasonal],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [WilsonSmith 1933],<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . [1918],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219V</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . syn244T (ACt),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor <b><span style="color: blue;">266V</span></b> <b><span style="color: blue;">gTC</span></b>, <b><span style="color: blue;">gTT</span></b>],</div>
<div class="c">
. . . . . . . . syn276H (CAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . .
[avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn295F (TTc) [<b><span style="color: #993300;">H7N9</span></b> Avian wild type],</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn331G (GGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn337A (GCt)</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . .
[<b>Pennsylvania07_C1_<span style="color: #993300;">1F</span>_2013_10_02</b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . .
<b>DominicanRep7626_C2_34F_2013_06_15<span style="color: #993300;">_TmX</span><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn475D (GAc) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">497R</span></b> [avH1N1<sub>farm</sub>, zH5N1, H9N2],</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1])</div>
</div>
</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI439516"></a><o:p></o:p></div>
<div class="c">
. . . . Alabama04_C1C1_54M_2013_02_25 (</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . A/Alabama/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439516" target="_blank">EPI439516</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138730" target="_blank">EPI_ISL_138730</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439521"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaStPetersburg42_C1C1_2013_02_20 (</div>
<div class="c">
. . . . . . . . A/St. Petersburg/42/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439521" target="_blank">EPI439521</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138735" target="_blank">EPI_ISL_138735</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn76A (GCc),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155F</span></b>,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI442700"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaStPetersburg37_C1C1_58x_2013_02_20 (</div>
<div class="c">
. . . . . . . . A/St. Petersburg/37/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">10H</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/442700" target="_blank">EPI442700</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138731" target="_blank">EPI_ISL_138731</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn415L (tTG))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439457"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania04_C1_52M_2013_02_14 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/04/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439457" target="_blank">EPI439457</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138724" target="_blank">EPI_ISL_138724</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">32M</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . syn257R (cGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440936"></a><o:p></o:p></div>
<div class="c">
. . . . NorthCarolina03_C1_66M_2013_02_13 (</div>
<div class="c">
. . . . . . . . A/North Carolina/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440936" target="_blank">EPI440936</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138732" target="_blank">EPI_ISL_138732</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (8 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . syn257R (cGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439462"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaStPetersburg19_E2E1_<b><span style="color: #993300;">1x</span></b>_2013_02_13 (</div>
<div class="c">
. . . . . . . . A/St. Petersburg/19/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439462" target="_blank">EPI439462</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138726" target="_blank">EPI_ISL_138726</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (5 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440006"></a><o:p></o:p></div>
<div class="c">
. . . . Kentucky02_M1C1_<b><span style="color: #993300;">12M</span></b>_2013_02_08 (</div>
<div class="c">
. . . . . . . . A/Kentucky/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">199N</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440006" target="_blank">EPI440006</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138673" target="_blank">EPI_ISL_138673</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type First Base Donor <st1:stockticker><b><span style="color: blue;">GGC</span></b></st1:stockticker>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn153S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">199N</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],<o:p></o:p></div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b> [avH1N1],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn439S (AGt),</div>
<div class="c">
. . . . . . . . syn452T (ACc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440940"></a><o:p></o:p></div>
<div class="c">
. . . . Nebraska05_C1_<b><span style="color: #993300;">1F</span></b>_2013_02_06 (</div>
<div class="c">
. . . . . . . . A/Nebraska/05/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440940" target="_blank">EPI440940</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138733" target="_blank">EPI_ISL_138733</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (8 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . syn257R (cGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn456S (TCc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439995"></a><o:p></o:p></div>
<div class="c">
. . . . Missouri03_C1_20F_2013_02_05 (</div>
<div class="c">
. . . . . . . . A/Missouri/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439995" target="_blank">EPI439995</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138659" target="_blank">EPI_ISL_138659</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn73N (AAt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439244"></a><o:p></o:p></div>
<div class="c">
. . . . Utah04_C1_<b><span style="color: #993300;">2M</span></b>_2013_02_03 (</div>
<div class="c">
. . . . . . . . A/Utah/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439244" target="_blank">EPI439244</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138667" target="_blank">EPI_ISL_138667</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn66Y (TAc),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn420P (CCc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440928"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana03_M1C1_<b><span style="color: #993300;">4M</span></b>_2013_02_02 (</div>
<div class="c">
. . . . . . . . A/Indiana/03/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440928" target="_blank">EPI440928</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138728" target="_blank">EPI_ISL_138728</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . syn28N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">30T</span></b> [H5N1 <st1:country-region>China</st1:country-region>
Human 2009</div>
<div class="c">
. . . . . . . . . . . . . . . . <st1:state>Guizhou</st1:state>
<b><span style="color: red;">Wet Market</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">321V</span></b>],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1 </span><span style="color: maroon;">Rare</span></b>: <b>19</b> Cases over <b>20</b> Sequences,<b><span style="color: purple;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . Vermont03_M1C2_29M_2013_04_08</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/454439" target="_blank">EPI454439</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142575" target="_blank">EPI_ISL_142575</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225N</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . <b><span style="color: #993300;">TamiFlu Resistance</span></b>:</div>
<div class="c">
. . . . . . . . . . . . . . . . KoreaSeoul1870_3F_2009_12_18</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/254674" target="_blank">EPI254674</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/74109" target="_blank">EPI_ISL_74109</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">275Y</span></b>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn221N (AAt) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc), <o:p></o:p></div>
<div class="c">
. . . . . . . . syn257R (cGA), </div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))<br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI439222"></a><o:p></o:p></div>
<div class="c">
. . . . California09_E3_<b><span style="color: #993300;">10F</span></b>_2013_01_22<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/California/09/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . Identical <b><span style="color: #003300;">NA </span></b>[<a href="http://gisaid.org/EPI/450894" target="_blank">EPI450894</a>]</div>
<div class="c">
. . . . . . . . . . . . . JapanIbaraki15_M3+2_2013_01_15 </div>
<div class="c">
. . . . . . . . . . . . . . . . [<a href="http://gisaid.org/EPI/450885" target="_blank">EPI450885</a>]</div>
<div class="c">
. . . . . . . . . . . . . JapanKanagawa54_M2+1_2013_01_22 </div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439222" target="_blank">EPI439222</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138658" target="_blank">EPI_ISL_138658</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (8 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type First Base Donor <st1:stockticker><b><span style="color: blue;">GGC</span></b></st1:stockticker>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">76V</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b> [avH1N1],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn426L (tTA),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439219"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork02_E3_28M_2013_01_22<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New York/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b>US Military
Cluster, 2 Adults & 2 Children</b></div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439219" target="_blank">EPI439219</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138657" target="_blank">EPI_ISL_138657</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (8 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . syn257R (cGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439216"></a><o:p></o:p></div>
<div class="c">
. . . . Washington05_E3_21F_2013_01_18 (</div>
<div class="c">
. . . . . . . . A/Washington/05/2013</div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439216" target="_blank">EPI439216</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138656" target="_blank">EPI_ISL_138656</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (5 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440000"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana02_C1_23F_2013_01_14 (</div>
<div class="c">
. . . . . . . . A/Indiana/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">45H </span></b>and <b><span style="color: blue;">52N</span></b></div>
<div class="c">
. . . . . . . . Identical <b><span style="color: #003300;">NA</span></b> to [<a href="http://gisaid.org/EPI/466203" target="_blank">EPI466203</a>]</div>
<div class="c">
. . . . . . . . . . . . . AustraliaTownsville34_M4_23F_2013_04_03 </div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440000" target="_blank">EPI440000</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138669" target="_blank">EPI_ISL_138669</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (9 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn30I (ATt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">45H</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">52N</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">84N</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> LookAside<sub>ud</sub> wild
type],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">389T</span></b> [<b><span style="color: #993300;">H7N9</span></b> LookAside<sub>u</sub> North <st1:country-region>America</st1:country-region>],</div>
<div class="c">
. . . . . . . . syn391Q (CAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439227"></a><o:p></o:p></div>
<div class="c">
. . . . ThailandSuratThani16_C1C1_xM_2013_01_11 (</div>
<div class="c">
. . . . . . . . A/Surat Thani/16/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">141R</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">300S</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">11S</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">385S</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439227" target="_blank">EPI439227</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138660" target="_blank">EPI_ISL_138660</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">5R</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">11S</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">93L</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . syn172S (TCg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">264I</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: maroon;">Emergent H7N9</span></b> LookAside<sub>u</sub> wild type],</div>
<div class="c">
. . . . . . . . syn338V (GTg),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385S</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> Amino wild type],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386S</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn393I (ATt),</div>
<div class="c">
. . . . . . . . syn416D (GAc),</div>
<div class="c">
. . . . . . . . syn439S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">451G </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . [H9N2])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439213"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong145_C3C1_61M_2013_01_10 (</div>
<div class="c">
. . . . . . . . A/Hong Kong/145/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">14S</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 186P, 188T & 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439213" target="_blank">EPI439213</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138655" target="_blank">EPI_ISL_138655</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type First Base Donor <st1:stockticker><b><span style="color: blue;">GGC</span></b></st1:stockticker>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn426L (tTA),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439233"></a><o:p></o:p></div>
<div class="c">
. . . . Japan1419_E3_29M_2013_01_09<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Japan/1419/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">44I</span></b></div>
<div class="c">
. . . . . . . . <b>US Military -
<span style="color: maroon;">Probable</span> Vaccination</b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 186P & 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439233" target="_blank">EPI439233</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138662" target="_blank">EPI_ISL_138662</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (7 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type First Base Donor <b><span style="color: blue;">ACT</span></b>],</div>
<div class="c">
. . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> China 2009 with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">30T</span></b>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn75A (GCa),</div>
<div class="c">
. . . . . . . . syn82S (TCt),</div>
<div class="c">
. . . . . . . . syn96G (GGg),</div>
<div class="c">
. . . . . . . . syn103D (GAt),</div>
<div class="c">
. . . . . . . . syn118R (AGa),</div>
<div class="c">
. . . . . . . . syn125S (TCt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">211V</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn237S (TCa),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">389T</span></b> [<b><span style="color: #993300;">H7N9</span></b> LookAside<sub>u</sub> North <st1:country-region>America</st1:country-region>],</div>
<div class="c">
. . . . . . . . syn430R (aGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">469N</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426457"></a><o:p></o:p></div>
<div class="c">
. . . . Tennessee01_C1_37M_2013_01_09 (</div>
<div class="c">
. . . . . . . . A/Tennessee/01/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426457" target="_blank">EPI426457</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136469" target="_blank">EPI_ISL_136469</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (8 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . syn257R (cGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439477"></a><o:p></o:p></div>
<div class="c">
. . . . Kyrgyzstan220_C1_2013_01_08 (</div>
<div class="c">
. . . . . . . . A/Kyrgyzstan/220/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">482I</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">313H</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439477" target="_blank">EPI439477</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138734" target="_blank">EPI_ISL_138734</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . syn30I (ATa),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn70S (AGt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">313H</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">411K mix wt</span></b> [H9N2])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439238"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico02_M1C2_<b><span style="color: #993300;">4M</span></b>_2013_01_06<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">190G</span></b> <a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI439238">GoFE</a></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439238" target="_blank">EPI439238</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138664" target="_blank">EPI_ISL_138664</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">224V</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Novel</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn274Y (TAc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440004"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong101_C3C1_<b><span style="color: #993300;">2M</span></b>_2013_01_05<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Hong Kong/101/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> with Strong Avian Influence</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> Identity 19/22 [<a href="http://gisaid.org/EPI/426460" target="_blank">EPI426460</a>]</div>
<div class="c">
. . . . . . . . . . . . . KoreaGyeongnam3526_C2C2_<b><span style="color: #993300;">13F</span></b>_2012_12_19</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity 16/17 [<a href="http://gisaid.org/EPI/426459" target="_blank">EPI426459</a>]</div>
<div class="c">
. . . . . . . . . . . . . KoreaGyeongnam3526_C2C2_<b><span style="color: #993300;">13F</span></b>_2012_12_19</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity with <b><span style="color: maroon;">High-</span></b><st1:stockticker><b><span style="color: maroon;">CFR</span></b></st1:stockticker>
<b><span style="color: purple;">pH1N1</span></b>
<b><span style="color: #993300;">Upsilon</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440004" target="_blank">EPI440004</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138672" target="_blank">EPI_ISL_138672</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (5 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn40L (CTc),</div>
<div class="c">
. . . . . . . . 44S [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48I</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn81V (GTc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn125S (TCa) [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn177V (GTt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA </span><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn197G (GGt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn240T (ACc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 241I [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn267V (GTt) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">287K </span></b>[<b><span style="color: maroon;">H7N9</span></b> Avian First Base Donor <st1:stockticker><b><span style="color: blue;">AGT</span></b></st1:stockticker>],<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn299S (TCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn356G (GGc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 369K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn376D (GAc) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn377P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn465F (TTc) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426446"></a><o:p></o:p></div>
<div class="c">
. . . . Texas07_C1_<b><span style="color: #993300;">1F</span></b>_2013_01_05 (</div>
<div class="c">
. . . . . . . . A/Texas/07/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Neuraminidase </span>nu</b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426446" target="_blank">EPI426446</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136465" target="_blank">EPI_ISL_136465</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn70S (AGt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn363K (AAg)</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn448V (GTc) mix wt</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440001"></a><o:p></o:p></div>
<div class="c">
. . . . Maryland02_CXC1_25F_2013_01_04 (</div>
<div class="c">
. . . . . . . . A/Maryland/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440001" target="_blank">EPI440001</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138670" target="_blank">EPI_ISL_138670</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (8 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . syn257R (cGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . NA Truncated after aa466)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439230"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico01_M1C2_35F_2013_01_04 (</div>
<div class="c">
. . . . . . . . A/New Mexico/01/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">119M</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439230" target="_blank">EPI439230</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138661" target="_blank">EPI_ISL_138661</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn191L (tTA) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439520"></a><o:p></o:p></div>
<div class="c">
. . . . Oman21_C2_24F_2013_01_03 (</div>
<div class="c">
. . . . . . . . A/Oman/21/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 189T</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439520" target="_blank">EPI439520</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138727" target="_blank">EPI_ISL_138727</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">66C mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439514"></a><o:p></o:p></div>
<div class="c">
. . . . Oman03_C2_<b><span style="color: #993300;">17F</span></b>_2012_12_31 (</div>
<div class="c">
. . . . . . . . A/Oman/03/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 189T</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439514" target="_blank">EPI439514</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138729" target="_blank">EPI_ISL_138729</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn168S (TCc),</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">430Q</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . [H5N1])<br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI426443"></a><o:p></o:p></div>
<div class="c">
. . . . Kentucky23_M1C1_37M_2012_12_25 (</div>
<div class="c">
. . . . . . . . A/Kentucky/23/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span></b> <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">#2L</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">313H</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426443" target="_blank">EPI426443</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136464" target="_blank">EPI_ISL_136464</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">19I</span></b> [H5N1], </div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">46T</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type:</div>
<div class="c">
. . . . . . . . . . . . . . Second Base Donor <st1:stockticker><b><span style="color: blue;">TCA</span></b></st1:stockticker>],</div>
<div class="c">
. . . . . . . . syn70S (AGt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">128G mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>: <b>16</b>
Cases over <b>21</b> Sequences,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">156E mix wt,<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">157E mix wt,</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . <b><span style="color: #993300;">CrossClade: 188T & 189T</span></b>,<b><span style="color: #993300;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . <b><span style="color: #993300;">TamiFlu Resistance</span><span style="color: #003300;"> NA</span></b> <b><span style="color: blue;">275Y </span></b>Count 02],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">313H</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439346"></a><o:p></o:p></div>
<div class="c">
. . . . India2192_C3_2012_12_22 (</div>
<div class="c">
. . . . . . . . A/India/2192/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">298V</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439346" target="_blank">EPI439346</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138692" target="_blank">EPI_ISL_138692</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn436I (ATt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426454"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota34_M1C1_<b><span style="color: #993300;">1M</span></b>_2012_12_20<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Minnesota/34/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">190G</span></b> <a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI426454">GoFE</a></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426454" target="_blank">EPI426454</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136468" target="_blank">EPI_ISL_136468</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . syn20A (GCc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">38T</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn55T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">56H</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">66H mix wt</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">67A</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI432619"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania2131_<b><span style="color: #993300;">1F</span></b>_2012_12_19 (</div>
<div class="c">
. . . . . . . . A/Tanzania/2131/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/432619" target="_blank">EPI432619</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/137434" target="_blank">EPI_ISL_137434</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn131T (ACa) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn432K (AAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426452"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania2131_<b><span style="color: #993300;">C2</span></b>_<b><span style="color: #993300;">1F</span></b>_2012_12_19<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/2131/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426452" target="_blank">EPI426452</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136467" target="_blank">EPI_ISL_136467</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (7 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn131T (ACa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">151N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">217R mix wt</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn432K (AAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426459"></a><o:p></o:p></div>
<div class="c">
. . . . KoreaGyeongnam3526_C2C2_<b><span style="color: #993300;">13F</span></b>_2012_12_19 (</div>
<div class="c">
. . . . . . . . A/Gyeongnam/3526/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">106K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> with Strong Avian Influence</div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">HA</span></b> Identity 19/23 [<a href="http://gisaid.org/EPI/439254" target="_blank">EPI439254</a>]</div>
<div class="c">
. . . . . . . . . . . . . HongKong101_C3C1_<b><span style="color: #993300;">2M</span></b>_2013_01_05<b><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity 16/19 [<a href="http://gisaid.org/EPI/440004" target="_blank">EPI440004</a>]</div>
<div class="c">
. . . . . . . . . . . . . HongKong101_C3C1_<b><span style="color: #993300;">2M</span></b>_2013_01_05<b><span style="color: red;">_VxX</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #003300;">NA</span></b> Identity with <b><span style="color: maroon;">High-</span></b><st1:stockticker><b><span style="color: maroon;">CFR</span></b></st1:stockticker>
<b><span style="color: purple;">pH1N1</span></b>
<b><span style="color: #993300;">Upsilon</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426459" target="_blank">EPI426459</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136470" target="_blank">EPI_ISL_136470</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (5 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn40L (CTc),</div>
<div class="c">
. . . . . . . . 44S [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn81V (GTc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn94V (GTc) [avH1N1],</div>
<div class="c">
. . . . . . . . syn125S (TCa) [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn177V (GTt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">HA </span><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn197G (GGt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn234V (GTg) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn240T (ACc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 241I [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn267V (GTt) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">287K </span></b>[<b><span style="color: maroon;">H7N9</span></b> Avian First Base Donor <st1:stockticker><b><span style="color: blue;">AGT</span></b></st1:stockticker>],<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn299S (TCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">341D mix wt</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> LookAside<sub>d</sub>
2013-10-14],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn356G (GGc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 369K [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn376D (GAc) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn377P (CCa) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn465F (TTc) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>])</div>
<br />
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI439311"></a><o:p></o:p></div>
<div class="c">
. . . . HongKong9232_C5C1_49F_2012_12_18<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Hong Kong/9232/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">141R<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439311" target="_blank">EPI439311</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138683" target="_blank">EPI_ISL_138683</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (7 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn42N (AAc),</div>
<div class="c">
. . . . . . . . syn68N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">83L</span></b>,</div>
<div class="c">
. . . . . . . . syn92C (TGt),</div>
<div class="c">
. . . . . . . . syn95S (AGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">122V</span></b>,</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn251A (GCt),</div>
<div class="c">
. . . . . . . . syn306F (TTt),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn385N (AAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386S</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">416N</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">451G </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . [H9N2])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440002"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania326_E3_<b><span style="color: #993300;">2M</span></b>_2012_12_05_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/326/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">476D</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440002" target="_blank">EPI440002</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138671" target="_blank">EPI_ISL_138671</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn432K (AAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439999"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania315_E3_30F_2012_11_30 (</div>
<div class="c">
. . . . . . . . A/Tanzania/315/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439999" target="_blank">EPI439999</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138668" target="_blank">EPI_ISL_138668</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321L</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439459"></a><o:p></o:p></div>
<div class="c">
. . . . Kenya2917_X1C1_<b><span style="color: #993300;">9F</span></b>_2012_11_28 (</div>
<div class="c">
. . . . . . . . A/Kenya/2917/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439459" target="_blank">EPI439459</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138725" target="_blank">EPI_ISL_138725</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426449"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania309_C2_<b><span style="color: #993300;">3M</span></b>_2012_11_28<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/309/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">193R</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426449" target="_blank">EPI426449</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136466" target="_blank">EPI_ISL_136466</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">313K</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439998"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania307_E3_36F_2012_11_27<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Tanzania/307/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> Genotype <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439998" target="_blank">EPI439998</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138666" target="_blank">EPI_ISL_138666</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn28N (AAt) mix wt</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn224L (TTa) mix wt</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn312Y (TAc) mix wt</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">313K mix wt</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn341N (AAc) mix wt</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439240"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania308_E3_35M_2012_11_27 (</div>
<div class="c">
. . . . . . . . A/Tanzania/308/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439240" target="_blank">EPI439240</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138665" target="_blank">EPI_ISL_138665</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #993300;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">313K</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439235"></a><o:p></o:p></div>
<div class="c">
. . . . Laos839_C1C2_<b><span style="color: #993300;">12F</span></b>_2012_11_12 (</div>
<div class="c">
. . . . . . . . A/Laos/839/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">141R</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439235" target="_blank">EPI439235</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138663" target="_blank">EPI_ISL_138663</a></div>
<div class="c">
. . . . . . . . 9 Polymorphisms (5 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">66H mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn158L (tTA),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386S</span></b> [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn416D (GAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">451G </span></b>[<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . [H9N2])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI432617"></a><o:p></o:p></div>
<div class="c">
. . . . CoteDIvoire1186_xF_2012_10_16<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Cote D'Ivoire/1186/2012</div>
<div class="c">
. . . . . . . . Perfect Identity to</div>
<div class="c">
. . . . . . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span> [</b><a href="http://gisaid.org/EPI/426441" target="_blank">EPI426441</a><b>]</b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/432617" target="_blank">EPI432617</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/137433" target="_blank">EPI_ISL_137433</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (4 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn20A (GCc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn34I (ATc),</div>
<div class="c">
. . . . . . . . syn36H (CAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . syn173R (cGA),</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn224L (cTG),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn369N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn431P (CCa),</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426440"></a><o:p></o:p></div>
<div class="c">
. . . . CoteDIvoire1186_C2_xF_2012_10_16<b><span style="color: red;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Cote D'Ivoire/1186/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape</span></b> <b><span style="color: #003300;">HI</span></b> Assay <b><span style="color: maroon;">Low Reactor</span></b><o:p></o:p></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">131T</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">386K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426440" target="_blank">EPI426440</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136463" target="_blank">EPI_ISL_136463</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (4 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn20A (GCc) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn34I (ATc),</div>
<div class="c">
. . . . . . . . syn36H (CAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . syn173R (cGA),</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn224L (cTG),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn369N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn431P (CCa),</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<div class="c">
<br /></div>
<div class="c">
<st1:personname><b><span style="font-size: 16.0pt;">Support</span></b></st1:personname><b><span style="font-size: 16.0pt;">ing
Sequences<o:p></o:p></span></b></div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI454439"></a><o:p></o:p></div>
<div class="c">
. . . . Vermont03_M1C2_29M_2013_04_08 (</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/454439" target="_blank">EPI454439</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142575" target="_blank">EPI_ISL_142575</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn182I (ATc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn211K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b>,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc),</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI454438"></a><o:p></o:p></div>
<div class="c">
. . . . Vermont03_M1C2_29M_2013_04_08 (</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/454438" target="_blank">EPI454438</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142575" target="_blank">EPI_ISL_142575</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (10 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">30T</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">220K</span></b>,</div>
<div class="c">
. . . . . . . . syn221N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn248D (GAc),</div>
<div class="c">
. . . . . . . . syn257R (cGA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289I</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> LookAside<sub>u</sub> wild
type],</div>
<div class="c">
. . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn398E (GAa)</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>])</div>
</div>
</div>
</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PB2</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI439345"></a><o:p></o:p></div>
<div class="c">
. . . . India2192_C3_2012_12_22 (</div>
<div class="c">
. . . . . . . . A/India/2192/2012</div>
<div class="c">
. . . . . . . . GISAID PB2 <a href="http://gisaid.org/EPI/439345" target="_blank">EPI439345</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138692" target="_blank">EPI_ISL_138692</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . 54K,</div>
<div class="c">
. . . . . . . . 66I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">114I</span></b>,</div>
<div class="c">
. . . . . . . . 155S,</div>
<div class="c">
. . . . . . . . 195N,</div>
<div class="c">
. . . . . . . . syn222G (GGt),</div>
<div class="c">
. . . . . . . . syn291G (GGt),</div>
<div class="c">
. . . . . . . . syn292V (GTg),</div>
<div class="c">
. . . . . . . . 293K,</div>
<div class="c">
. . . . . . . . syn319I (ATc),</div>
<div class="c">
. . . . . . . . 344M,</div>
<div class="c">
. . . . . . . . syn348N (AAt),</div>
<div class="c">
. . . . . . . . 354L,</div>
<div class="c">
. . . . . . . . syn383Q (CAa),</div>
<div class="c">
. . . . . . . . syn384L (TTa),</div>
<div class="c">
. . . . . . . . syn396E (GAa),</div>
<div class="c">
. . . . . . . . syn427R (aGA),</div>
<div class="c">
. . . . . . . . syn482K (AAg),</div>
<div class="c">
. . . . . . . . syn489S (TCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">518I</span></b>,</div>
<div class="c">
. . . . . . . . syn555R (AGa),</div>
<div class="c">
. . . . . . . . syn573N (AAt),</div>
<div class="c">
. . . . . . . . syn646R (AGa),</div>
<div class="c">
. . . . . . . . syn697L (TTa),</div>
<div class="c">
. . . . . . . . 731I)</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PB1</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI440007"></a><o:p></o:p></div>
<div class="c">
. . . . India2192_C3_2012_12_22 (</div>
<div class="c">
. . . . . . . . A/India/2192/2012</div>
<div class="c">
. . . . . . . . GISAID PB1 <a href="http://gisaid.org/EPI/440007" target="_blank">EPI440007</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138692" target="_blank">EPI_ISL_138692</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (3 Amino and 20 Silent)</div>
<div class="c">
. . . . . . . . syn14A (GCa),</div>
<div class="c">
. . . . . . . . syn56T (ACa),</div>
<div class="c">
. . . . . . . . syn105N (AAt),</div>
<div class="c">
. . . . . . . . syn122L (CTg),</div>
<div class="c">
. . . . . . . . 154D,</div>
<div class="c">
. . . . . . . . syn158N (AAc),</div>
<div class="c">
. . . . . . . . syn210Q (CAg),</div>
<div class="c">
. . . . . . . . syn270G (GGa),</div>
<div class="c">
. . . . . . . . syn295D (GAt),</div>
<div class="c">
. . . . . . . . syn333F (TTt),</div>
<div class="c">
. . . . . . . . syn346N (AAt),</div>
<div class="c">
. . . . . . . . syn377D (GAt),</div>
<div class="c">
. . . . . . . . syn396L (tTA),</div>
<div class="c">
. . . . . . . . 397M,</div>
<div class="c">
. . . . . . . . 435T,</div>
<div class="c">
. . . . . . . . syn573S (TCa),</div>
<div class="c">
. . . . . . . . syn632V (GTa),</div>
<div class="c">
. . . . . . . . syn635K (AAg),</div>
<div class="c">
. . . . . . . . syn692C (TGt),</div>
<div class="c">
. . . . . . . . syn701P (CCa),</div>
<div class="c">
. . . . . . . . syn719V (GTa),</div>
<div class="c">
. . . . . . . . syn730F (TTt),</div>
<div class="c">
. . . . . . . . syn734R (CGa))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">PA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI439344"></a><o:p></o:p></div>
<div class="c">
. . . . India2192_C3_2012_12_22 (</div>
<div class="c">
. . . . . . . . A/India/2192/2012</div>
<div class="c">
. . . . . . . . GISAID PA <a href="http://gisaid.org/EPI/439344" target="_blank">EPI439344</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138692" target="_blank">EPI_ISL_138692</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (2 Amino and 25 Silent)</div>
<div class="c">
. . . . . . . . syn33N (AAt),</div>
<div class="c">
. . . . . . . . syn112Y (TAt),</div>
<div class="c">
. . . . . . . . syn115N (AAt),</div>
<div class="c">
. . . . . . . . syn145I (ATc),</div>
<div class="c">
. . . . . . . . syn154E (GAa),</div>
<div class="c">
. . . . . . . . syn169A (GCg),</div>
<div class="c">
. . . . . . . . syn221P (CCa),</div>
<div class="c">
. . . . . . . . syn291S (AGc),</div>
<div class="c">
. . . . . . . . syn312K (AAa),</div>
<div class="c">
. . . . . . . . 321K,</div>
<div class="c">
. . . . . . . . syn335L (CTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">343T</span></b>,</div>
<div class="c">
. . . . . . . . syn358K (AAa),</div>
<div class="c">
. . . . . . . . syn390L (CTc),</div>
<div class="c">
. . . . . . . . syn398P (CCc),</div>
<div class="c">
. . . . . . . . syn443R (AGa),</div>
<div class="c">
. . . . . . . . syn476A (GCt),</div>
<div class="c">
. . . . . . . . syn508R (AGa),</div>
<div class="c">
. . . . . . . . syn534P (CCa),</div>
<div class="c">
. . . . . . . . syn544E (GAg),</div>
<div class="c">
. . . . . . . . syn563L (tTA),</div>
<div class="c">
. . . . . . . . syn592I (ATc),</div>
<div class="c">
. . . . . . . . syn608T (ACt),</div>
<div class="c">
. . . . . . . . syn645V (GTg),</div>
<div class="c">
. . . . . . . . syn662S (TCa),</div>
<div class="c">
. . . . . . . . syn673R (AGa),</div>
<div class="c">
. . . . . . . . syn705S (TCc))</div>
<br />
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<div style="text-align: center;">
<span style="font-size: x-small;"><em><b><span style="color: #4c1130;">pH1N1</span></b> Influenza <b><span style="color: #274e13;">PolymeraseBasic2</span></b>, <b><span style="color: #274e13;">PolymeraseBasic1</span></b>, <b><span style="color: #274e13;">PolymeraseAcidic</span></b>, <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments<br />elucidated at 2013-12-19-02_04_33_556030 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2014. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2014 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-618473995605814212014-01-04T21:17:00.001-06:002014-03-25T21:33:40.662-05:00Texas Fatality by County - pH1N1 Season<style type="text/css">
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<span style="font-size: small;"><br />
Publish Date : 2014-01-04<br />
Last Update : 2014-03-25</span><br />
<br />
A <a href="http://pf11.blogspot.com/2009/11/norway-sequence-with-225g-mixture-also.html" target="_blank">flashfire</a> occurs when a <a href="http://pf11.blogspot.com/2013/12/texas-ha-225-receptor-binding-variance.html" target="_blank">minority species</a> with <b><span style="color: #274e13;">Hemagglutinin</span></b> <b><span style="color: #660000;">Receptor Binding Variance</span></b> persists unacknowledged.
<br />
<br />
<!--
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<div style="text-align: center;">
<iframe width="300" height="250" src="http://www.google.org/flutrends/embed/en_us/us/#US-TX" frameborder="0"></iframe>
</div>
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-->
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<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px; width: 70%;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Texas Influenza Severity</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 30%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 50%;" title="Texas Influenza Fatality by County">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Texas<br />
Influenza Fatality<br />
by<br />
County<span style="color: blue; font-size: 120%;"><sup>*</sup></span></td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">County</th><th style="text-align: center;">Count</th></tr>
<tr class="rowShadeA1"><td> <b>Angelina</b></td><td class="colCTR">03</td></tr>
<tr class="rowShadeA2"><td> <b>Bell</b></td><td class="colCTR">05</td></tr>
<tr class="rowShadeA1"><td> <b>Bexar</b></td><td class="colCTR">02</td></tr>
<tr class="rowShadeA2"><td><a href="https://www.blogger.com/null" id="Collin"></a> <b>Collin</b></td><td class="colCTRHigh">10</td></tr>
<tr class="rowShadeA1"><td> <b>Coryell</b></td><td class="colCTR">02</td></tr>
<tr class="rowShadeA2"><td><a href="https://www.blogger.com/null" id="Dallas"></a> <b>Dallas</b></td><td class="colCTRHigh">54</td></tr>
<tr class="rowShadeA1"><td> <b>Denton</b></td><td class="colCTRHigh">11</td></tr>
<tr class="rowShadeA2"><td> <b>Ector</b></td><td class="colCTR">02</td></tr>
<tr class="rowShadeA1"><td> <b>El Paso</b></td><td class="colCTRHigh">17</td></tr>
<tr class="rowShadeA2"><td> <b>Grayson</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA1"><td> <b>Gregg</b></td><td class="colCTR">05</td></tr>
<tr class="rowShadeA2"><td> <b>Hardin</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA1"><td> <b>Harris</b></td><td class="colCTRHigh">14</td></tr>
<tr class="rowShadeA2"><td> <b>Hidalgo</b></td><td class="colCTRHigh">15</td></tr>
<tr class="rowShadeA1"><td> <b>Hood</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA2"><td> <b>Hunt</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA1"><td> <b>Jasper</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA2"><td> <b>Jefferson</b></td><td class="colCTR">05</td></tr>
<tr class="rowShadeA1"><td> <b>Jones</b></td><td class="colCTR">04</td></tr>
<tr class="rowShadeA2"><td> <b>McLennan</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA1"><td> <b>Midland</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA2"><td> <b>Montgomery</b></td><td class="colCTR">04</td></tr>
<tr class="rowShadeA1"><td> <b>Nacogdoches</b></td><td class="colCTR">02</td></tr>
<tr class="rowShadeA2"><td> <b>Nueces</b></td><td class="colCTR">03</td></tr>
<tr class="rowShadeA1"><td> <b>Orange</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA2"><td> <b>Reeves</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA1"><td> <b>San Patricio</b></td><td class="colCTR">03</td></tr>
<tr class="rowShadeA2"><td> <b>Smith</b></td><td class="colCTR">03</td></tr>
<tr class="rowShadeA1"><td> <b>Starr</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA2"><td> <b>Tarrant</b></td><td class="colCTRHigh">10</td></tr>
<tr class="rowShadeA1"><td> <b>Tom Green</b></td><td class="colCTR">05</td></tr>
<tr class="rowShadeA2"><td> <b>Travis</b></td><td class="colCTRHigh">16</td></tr>
<tr class="rowShadeA1"><td> <b>Tyler</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA2"><td> <b>Webb</b></td><td class="colCTR">03</td></tr>
<tr class="rowShadeA1"><td> <b>Wichita</b></td><td class="colCTRHigh">07</td></tr>
<tr class="rowShadeA2"><td> <b>Williamson</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA1"><td> <b>Wise</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA2"><td> <b>Unknown</b></td><td class="colCTR">01</td></tr>
<tr class="rowShadeA1"><td> <b>UnBorn (Travis)</b></td><td class="colCTR">02</td></tr>
<tr><td colspan="2"></td></tr>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold;"><td> <b>Total</b></td><td class="colCTR">221</td></tr>
</tbody></table>
</td></tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 40%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 80%;" title="Texas Influenza Fatality by County">
<tbody>
<tr style="background-color: #a6a6a6; font-size: 80%; text-align: center;"><td colspan="2"><span style="color: blue; font-size: 140%;"><sup>*</sup></span> Information Compiled From:<br />
Public Health Press Releases<br />
Media Reports<br />
Obituaries</td></tr>
<tr style="color: white; font-size: 90%;"><td style="background-color: #004100;"> Last Update</td><td style="background-color: #197419; color: black; font-weight: bold; text-align: center;">2014-03-25</td></tr>
<tr style="color: white; font-size: 90%;"><td style="background-color: #004100;"> Compilers</td><td style="background-color: #197419; color: black; font-weight: bold; text-align: center;">Jim Oliveros & NS1</td></tr>
<tr style="color: white; font-size: 90%;"><td style="background-color: #004100;"> Publication Source</td><td style="background-color: #197419; color: black; font-weight: bold; text-align: center;">FluTrackers.com</td></tr>
<tr style="color: white; font-size: 90%;"><td style="background-color: #004100;"> Publication Link</td><td style="background-color: #197419; color: black; font-weight: bold; text-align: center;">FT [<a href="http://www.flutrackers.com/forum/showthread.php?t=215755" target="_blank">215755</a>]</td></tr>
<tr style="color: white; font-size: 90%;"><td style="background-color: #004100;"> Excel Download</td><td style="background-color: #197419; color: black; font-weight: bold; text-align: center;">Texas [<a href="http://genewurx.com/data/2014_03_25_Texas_Fatality_by_County.xls" rel="nofollow" target="_blank">Fatal</a>]</td></tr>
<tr style="color: white; font-size: 90%;"><td style="background-color: #004100;"> Sortable Table</td><td style="background-color: #197419; color: black; font-weight: bold; text-align: center;">Texas [<a href="http://genewurx.com/data/TexasFatalityByCounty.html" target="_blank">Sort</a>]</td></tr>
</tbody></table>
</td>
</tr>
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<span style="font-size: x-small;"><i>Publication Copyright 2007-2014 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-48580746919965766462014-01-02T23:59:00.000-06:002014-01-03T01:27:16.353-06:00Novel London pH1N1 2013 Case Displays Promiscuous Genetics<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_12_30_HPA_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2014-01-02<br />
Last Update : 2014-01-03</span><br />
<div style="text-align: center;">
<hr style="width: 35%;" />
1 Sequence<br />
<hr style="width: 35%;" />
<br /></div>
On 2014-01-02, the <span style="color: #783f04;"><b>Health Protection Agency of the United Kingdom</b></span> released a <strong><span style="color: #4c1130;">pH1N1</span></strong> sequence with a <strong>GISAID </strong>submission date of 2013-12-30 that was<b> </b>sampled in London during November of 2013. No age, gender, patient status, vaccination status or outbreak metadata was provided. <br />
<br />
On this same day, the Guardian news <a href="http://www.theguardian.com/society/2014/jan/02/uk-unprepared-flu-pandemic" target="_blank">outlet</a> asserted to no small response that the UK was not prepared for a flu epidemic. These reporters may be more accurate than they realise, but for an altogether different reason than they have developed in the filing.<br />
<br />
<table align="center" border="0px" cellpadding="2px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px; width: 90%;">
<tbody>
<tr style="float: center;"><td style="font-size: 140%; font-weight: bold;">UK 'unprepared for flu epidemic'
</td></tr>
<tr style="float: center;"><td style="font-size: 90%;">Changes to NHS mean country will be unable to cope with major outbreak of disease, possibly leading to thousands of deaths
</td></tr>
<tr style="float: center; font-size: 100%;"><td></td></tr>
<tr style="float: center; font-size: 60%;"><td>Denis Campbell, health correspondent</td></tr>
<tr style="float: center; font-size: 60%;"><td><a href="http://www.theguardian.com/theguardian" target="_blank">The Guardian</a>, Thursday 2 January 2014 15.01 EST</td></tr>
<tr style="float: center; font-size: 100%;"><td></td></tr>
<tr style="float: center; font-size: 100%;"><td></td></tr>
<tr style="float: center;">
<td align="center" style="vertical-align: middle; width: 85%;"><div style="background-color: navajowhite; border-bottom-left-radius: 20px; border-bottom-right-radius: 20px; border-top-left-radius: 20px; border-top-right-radius: 20px; border: 2px solid maroon; color: black; line-height: 18px; padding: 10px; text-align: center; width: 88%;">
<div style="text-align: left;">
<span style="font-family: Georgia, Times New Roman, serif; font-size: 100%;">'The Cabinet Office has advised local resilience forums to lay plans to tackle a potential pandemic that could affect up to half the population, lead to as many as 4% of those affected being admitted to hospital, and cause "excess deaths in the range of 210,000-315,000 nationally".'</span></div>
</div>
</td></tr>
<tr style="float: center; font-size: 100%;"><td></td></tr>
<tr style="float: center; font-size: 100%;"><td></td></tr>
</tbody></table>
<br />
The <b>UKEnglandLondon624_2013_11_04</b> sequence is<b><span style="color: #660000;"> novel</span></b> at the <b><span style="color: #274e13;">Hemagglutinin</span></b> segment and at the <b><span style="color: #274e13;">Neuraminidase</span></b> segment. More importantly, the sequence background is <b><span style="color: #783f04;">very permissive</span></b> to acquisition of avian influenza genetics, but acquisition may not be required for similar cases to become severe. <br />
<br />
In the past 11 months, homologous backgrounds have regularly demonstrated a capacity for <b><span style="color: #783f04;">raising a minority</span></b> quasi-species of <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b> and / or <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">194I</span></b> in certain individuals to a <b><span style="color: #660000;">dominant </span></b>population. Those <b><span style="color: #783f04;">Receptor Binding Site</span></b> polymorphisms are documented to produce <b><span style="color: #660000;">deep lung</span></b> involvement due to a shift in binding preference toward <b><span style="color: #783f04;">alpha 2,3 galactose</span></b> receptors.<br />
<br />
Expect small clusters with exceptionally poor clinical outcomes should the conditions arise to manifest these <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b> and <b><span style="color: blue;">225N</span></b> genetics. The compound effect of potential NHS turmoils brings visage of 2009 when patients were air-shipped for ECMO from under-staffed and over-capacity Critical Care Units all over the country.<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI497687"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandLondon624_2013_11_04 (</div>
<div class="c">
. . . . . . . . A/ENG/624/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">116K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition </span><span style="color: #003300;">HA</span></b>
<b><span style="color: blue;">116K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition </span>Potential</b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">218E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase </span><span style="color: blue;">VISA</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/497687" target="_blank">EPI497687</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152932" target="_blank">EPI_ISL_152932</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">116K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type], </div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span><span style="color: maroon;"> ReEmergent </span></b>2013],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> 2013 <b><span style="color: maroon;">Rare</span></b>: <b>4</b>
Cases over <b>5</b> Sequences],</div>
<div class="c">
. . . . . . . . . . . . [Early<b><span style="color: purple;"> pH1N1</span></b>:</div>
<div class="c">
. . . . . . . . . . . . . . . . 2011 Count 01:</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . Tunisia1701_45M_2011_02_10</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . <st1:personname>GenBank</st1:personname>
HA <a href="http://www.ncbi.nlm.nih.gov/nuccore/JN037743" target="_blank">JN037743</a><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . <b><span style="color: maroon;">Escape Variant</span></b> </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">117V</span></b>, <b><span style="color: blue;">225G </span>&<span style="color: blue;"> 273A</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . Strong <b><span style="color: blue;">225G</span></b> Correlation
</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . for related <b><span style="color: #003300;">HA</span></b>
segments,<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . Strong <b><span style="color: blue;">225N</span></b> Correlation</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . for related <b><span style="color: #003300;">HA</span></b> segments,<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . 2010 Count 05,<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . 2009 Count 37:<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . <st1:country-region>UK</st1:country-region>
Regional Marker,</div>
<div class="c">
. . . . . . . . . . . . [H7N7 wild type], </div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 166Q,</div>
<div class="c">
. . . . . . . . syn176V (GTt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">218E </span></b>[H7N7 <b><span style="color: maroon;">Host Switching</span></b>:</div>
<div class="c">
. . . . . . . . . . . . . . . . Sea Mammal,</div>
<div class="c">
. . . . . . . . . . . . . . . . Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [<b><span style="color: purple;">pH1N1</span> <span style="color: #993300;">Upsilon</span> </b><st1:country-region><st1:place><b>US</b></st1:place></st1:country-region><b> Military</b>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn429L (cTG),</div>
<div class="c">
. . . . . . . . syn431L (tTA),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">502K</span></b>,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI497688"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandLondon624_2013_11_04 (</div>
<div class="c">
. . . . . . . . A/ENG/624/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">116K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">H7N9</span></b> Correlation <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">48A</span></b> and <b><span style="color: blue;">321V</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition </span><span style="color: #003300;">HA</span></b>
<b><span style="color: blue;">116K</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Host Transition </span>Potential</b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">218E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Hemagglutinin<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: maroon;">Novel</span><span style="color: #003300;"> Neuraminidase </span><span style="color: blue;">VISA</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Clade2: 188T</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/497688" target="_blank">EPI497688</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/152932" target="_blank">EPI_ISL_152932</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (10 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 34V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40I</span></b> [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . .[avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 44S [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">48A</span></b> [<b><span style="color: maroon;">H7N9</span></b> Avian],</div>
<div class="c">
. . . . . . . . 106V [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn125S (TCa) [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt) [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn295N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: purple;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn378N (AAt) [<b><span style="color: purple;">pH1N1</span></b> with <b><span style="color: #003300;">NA</span></b> <b><span style="color: blue;">247N</span></b> <b><span style="color: #993300;">TamiFlu Resistance</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn383T (ACt) [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn409H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">432E</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> LookAside<sub>d</sub> wild type])</div>
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<span style="font-size: x-small;"><em><b><span style="color: #4c1130;">pH1N1</span></b> Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2014-01-02-16_16_23_059060 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2014. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
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<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-46233472546265538122013-12-25T23:55:00.000-06:002013-12-26T00:24:40.457-06:00Texas HA 225 Receptor Binding Variance Potential<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-12-25<br />
Last Update : 2013-12-25</span><br />
<br />
<strong><span style="color: #990000;">Current trending</span></strong> indicates a reportable potential for <b><span style="color: #274e13;">HA</span></b> <b>225</b> <b><span style="color: #660000;">Receptor Binding</span></b> Variance <strong><span style="color: #783f04;">spreading</span></strong> into Texas on the <strong><span style="color: #274e13;">Hemagglutinin</span></strong> of <strong><span style="color: #4c1130;">pH1N1</span></strong>. This change may enhance Vaccine Escape from the currently selected vaccine target candidate, CA/07 X181. <br />
<br />
The <strong><span style="color: #783f04;">GeneWurx</span></strong> <strong><span style="color: #660000;">RnR</span></strong> model approximates that <b><span style="color: #660000;">Receptor Binding</span></b> Variance at <strong><span style="color: #274e13;">HA</span></strong> <b>225 </b>may spread into <b>Texas</b> sampled from a severe or fatal case on a <strong><span style="color: #4c1130;">pH1N1</span></strong> background carrying <b><span style="color: #783f04;">either</span></b> <span style="color: blue;"><b>225N</b></span> or <span style="color: blue;"><b>225G</b></span>, according to the following probabilities.<br />
<br />
<ul>
<li>60% probability sampled by <b>2014-02-01</b> of <strong><span style="color: #274e13;">HA</span></strong> <b><span style="color: blue;">225N</span>.</b></li>
<li>78% probability sampled by <b>2014-02-01 </b>of either <strong><span style="color: #274e13;">HA</span></strong> <b><span style="color: blue;">225N</span> </b>or<b> </b><strong><span style="color: #274e13;">HA</span></strong> <b><span style="color: blue;">225G</span>.</b></li>
</ul>
<ul>
<li>01% probability sampled by <b>2014-06-30</b> of <strong><span style="color: #274e13;">HA</span></strong> <span style="color: blue; font-weight: bold;">225N </span>conserving across <b><span style="color: #4c1130;">pH1N1</span></b>.</li>
<li>04% probability sampled by <b>2014-06-30</b> of <strong><span style="color: #274e13;">HA</span></strong> <span style="color: blue; font-weight: bold;">225N </span>conserving on one Hydra.</li>
<li>16% probability sampled by <b>2014-06-30</b> of <strong><span style="color: #274e13;">HA</span></strong> <span style="color: blue; font-weight: bold;">225N </span>persisting sporadically on one Hydra.</li>
</ul>
These outcomes are predicated on properly collected and handled specimen material, at a minimum, from <b><span style="color: #660000;">broncho-alveolar lavage</span></b> and / or from <b><span style="color: #660000;">lung tissue at autopsy</span></b>. Deep sequencing is indicated for these low-trace, <b><span style="color: #783f04;">quasi-species</span></b> situations. We are fully aware that these types of collections may be withheld from public issue. Therefore, this prediction may fail to be validated due to that intentional censoring of public health data.<br />
<br />
As we are concerned that no valid specimen may be properly collected, sequenced and made available to researchers, we provide a <b><span style="color: #783f04;">GeneWurx </span></b>projection of the highest ranking clinical severity combination of <b><span style="color: #274e13;">Hemagglutinin</span></b> and <b><span style="color: #274e13;">Neuraminidase</span></b> segments. <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225N</span></b> is the <b><span style="color: #660000;">RBS</span></b> polymorphism that we consider of gravest concern to the <b>Texas</b> citizens at the moment; although, the projected <b><span style="color: #274e13;">Neuraminidase</span></b> is a high probability potentiator of clinical morbidity.<br />
<br />
<b><span style="color: #783f04;">Avoidance of Influenza</span></b> may be a lifesaving behaviour this winter.<span class="Apple-tab-span" style="white-space: pre;"> </span><br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Projection</b></span></div>
<br />
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)<br />
. . . . . . . . syn77S (AGt),<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn141H (CAc),<br />
. . . . . . . . 166Q,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . <b><span style="color: blue;">225N</span></b>,<br />
. . . . . . . . 259T,<br />
. . . . . . . . 286E,<br />
. . . . . . . . syn308K (AAg),<br />
. . . . . . . . syn333F (TTc),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . syn372Q (CAa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . <b><span style="color: blue;">syn383N (AAc)</span></b>,<br />
. . . . . . . . syn396V (GTg),<br />
. . . . . . . . <b><span style="color: blue;">syn413K (AAg)</span></b>,<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N,<br />
. . . . . . . . 502K,<br />
. . . . . . . . syn537S (AGc))<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Projection</b></span></div>
<br />
. . . . . . . . 16 Polymorphisms (10 Amino and 6 Silent)<br />
. . . . . . . . 40V<br />
. . . . . . . . 44S,<br />
. . . . . . . . syn77G (GGg),<br />
. . . . . . . . <b><span style="color: blue;">79P</span></b>,<br />
. . . . . . . . 106V,<br />
. . . . . . . . <b><span style="color: blue;">108V</span></b>,<br />
. . . . . . . . <b><span style="color: blue;">199N</span></b>,<br />
. . . . . . . . 200S,<br />
. . . . . . . . <b><span style="color: blue;">222D</span></b>,<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn378N (AAt),<br />
. . . . . . . . syn439S (AGt),<br />
. . . . . . . . syn452T (ACc))<br />
<br />
Additional revisions may compound onto these segments. <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b> will variously arise on this same combination given certain collection and passage strategies (<b>E3</b>). <b><span style="color: #783f04;">CrossClade</span></b> revision may occur under particular passage strategies and / or plague purifications. <br />
<br />
Due to message management and information sparsity, conclusions on clinical progressions may not be finalised at this time. However, present clinical reports tend toward the suggestion that in all but exceptional cases, patients infected with this background will experience <b><span style="color: #660000;">severe to fatal</span></b> illness. <br />
<br />
The <b><span style="color: #4c1130;">pH1N1</span></b> reservoir has currently <b><span style="color: #783f04;">seeded</span></b> genetic material for this background throughout <b>North America</b> including on <b><span style="color: #783f04;">TamiFlu Resistant</span></b> strains. This genetic bed is positioned to become widely <b><span style="color: #783f04;">TamiFlu Resistant </span></b>during the 2013-2014 season in addition to using these <b><span style="color: #660000;">Receptor Binding Site</span></b> polymorphisms to manifest <a href="http://pf11.blogspot.com/2009/11/225g-preliminary-worldwide-evaluation.html" target="_blank">flashfires</a> of <b><span style="color: #660000;">High-CFR</span></b> intensity in <b>North American</b> geographic foci.<br />
<br />
These probabilities will be updated as additional data is made public. Transparency at this <strong><em><span style="color: #660000;">post-pandemic</span></em></strong> stage is essential to formulate viable responses for the risk groups. Release of sequences and clinical data of a finer detail and higher quantity will allow information-based decisions.<br />
<br />
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NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-21164391414744744272013-12-02T23:48:00.000-06:002013-12-05T04:06:15.396-06:00Prediction Demonstrated of Antigenic Dual Geography sH3N2 HA 140K<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_blp_HA_140K_AaA_2013_12_02_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-12-02<br />
Last Update : 2013-12-04</span><br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/blp_HA_140K_AaA_2013_12_02_Map.html" target="_blank"><img alt="sH3N2 Prediction Demonstration: HA 140K" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/blp_HA_140K_AaA_2013_12_02_Map.html" target="_blank">Map - Dual Geography Prediction</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 40%;" />
2 Predicted Human Sequences<br />
<hr style="width: 40%;" />
<br /></div>
The <b style="color: #783f04;">United States CDC</b> and the <b style="color: #783f04;">UK National Institute for Medical Research</b> published sequences at <b>GISAID</b> respectively on 2013-06-21 (<b><span style="color: #783f04;">CDC</span></b>) and 2013-06-26 (<b><span style="color: #783f04;">NIMR</span></b>) that fulfill the <b><span style="color: #660000;">dual</span></b> geography genetic change and timing of the <b><span style="color: #783f04;">GeneWurx</span></b> <b><span style="color: #660000;">spread</span></b> <a href="http://pf11.blogspot.com/2013/02/sh3n2-ha-140k-antigen-polymorphism.html" target="_blank">prediction</a> published on 2013-02-08 titled <b><span style="color: #073763;">sH3N2</span></b> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b> <b><span style="color: #274e13;">Antigen</span></b> <b><span style="color: #783f04;">Polymorphism Potential in </span><span style="color: #660000;">Europe</span><span style="color: #783f04;"> and </span><span style="color: #660000;">North America</span></b>.<br />
<br />
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<tbody>
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<td colspan="3">Antigenic Variance</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 85%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 87%;" title="HA 140K Prediction 2013">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4"><span style="color: #073763;">sH3N2</span><br />
<span style="color: #274e13;">Antigen Revision</span> Demonstrated As <span style="color: #ffd966;">Predicted</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Date</th><th style="text-align: center;">Name</th><th style="text-align: center;">Antigen<br />
Revision</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> 2013-04-24 </td><td> Alaska04_C2_44M</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI459829" style="font-size: 80%;" target="_blank">EPI459829</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-03-12 </td><td> RussiaSamara73_C1St1_17F</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI460558" style="font-size: 80%;" target="_blank">EPI460558</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
The <b>Alaska04_C2_44M_2013_04_24</b> sequence was antigenically characterised as a <b>Victoria361</b>-like vaccine match.<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Vaccine Candidate Investigation</b></span></div>
<br />
On 2013-12-02 the <b style="color: #783f04;">United States CDC </b>produced 3 lab-derived, <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b> sequences dated 2013-11-29 and 2013-12-02 (2) at <b>GISAID</b> that originated at <b>New York Medical College</b> and are coded similarly to previous Investigational Vaccine Candidates (X-233 & X-233A). The 3 lab-developed sequences appear to be based on the <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> of the fixed form derived / purified from an early ambiguous <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b> emergence, <b>A/New York/39/2012</b>. <br />
<br />
That New York sample taken on 2012-10-20 was published with a submission date and update date of 2012-12-07 on a C1 passage with <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140I</span></b>, then on an E3 passage with ambiguity at <b><span style="color: #274e13;">HA</span></b> aa140. Those C1 and E3 passages were each antigenically characterised as <b>Victoria361</b>-like vaccine matches, although that E3 passage showed some trace of ambiguity resolving to <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b>.<br />
<br />
In a publication dated 2013-03-14, an E4 passage derived the <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b>. An E5 passage of <b>A/New York/39/2012 </b>with ambiguity resolving to <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b> was added to <b>GISAID</b> today, 2013-12-02, by the <b style="color: #783f04;">United States CDC</b> to join the outcomes of various other passage strategies for a total of 9 sequences on deposit from this New York sample.<br />
<br />
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<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Vaccine Candidate Investigation</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 85%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 98%;" title="HA 140K Prediction 2013">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4"><span style="color: #073763;">sH3N2</span><br />
<span style="color: yellow;">Investigational</span> NewYork39_2012_10_20 <span style="color: #eeeeee;">Passage Strategies</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Publish<br />
Date</th><th style="text-align: center;">Name</th><th style="text-align: center;">aa140<br />
Antigen</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> 2013-12-02 </td><td> NewYork39_<span style="color: #783f04;"><b>EXIR</b></span>_5M_X233A_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI490080" style="font-size: 80%;" target="_blank">EPI490080</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-12-02 </td><td> NewYork39_<b><span style="color: #783f04;">EXIR</span></b>_5M_X233_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI490077" style="font-size: 80%;" target="_blank">EPI490077</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-11-29 </td><td> NewYork39_<b><span style="color: #783f04;">E4E8E1</span></b>_5M_X233_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI489319" style="font-size: 80%;" target="_blank">EPI489319</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-12-02 </td><td> NewYork39_<b><span style="color: #783f04;">E5</span></b>_5M_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K mix wt</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI490093" style="font-size: 80%;" target="_blank">EPI490093</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-05-08 </td><td> NewYork39_<b><span style="color: #783f04;">C2</span></b>_5M_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140I</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI445712" style="font-size: 80%;" target="_blank">EPI445712</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-03-14 </td><td> NewYork39_<b><span style="color: #783f04;">E4</span></b>_5M_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI436261" style="font-size: 80%;" target="_blank">EPI436261</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-02-25 </td><td> NewYork39_<b><span style="color: #783f04;">C3</span></b>_5M_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140I</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI426140" style="font-size: 80%;" target="_blank">EPI426140</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012-12-07 </td><td> NewYork39_<b><span style="color: #783f04;">E3</span></b>_5M_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K mix wt</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI404965" style="font-size: 80%;" target="_blank">EPI404965</a> </td></tr>
<tr style="font-size: 90%;"><td> 2012-12-07 </td><td> NewYork39_<b><span style="color: #783f04;">C1</span></b>_5M_2012_10_20</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140I</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/12/prediction-demonstrated-of-antigenic.html#EPI404927" style="font-size: 80%;" target="_blank">EPI404927</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b>MetaData</b></span></div>
<br />
Our researchers very much appreciate that <b><span style="color: #783f04;">age</span></b> and <b><span style="color: #783f04;">gender</span></b> information are annotated for each base <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K </span></b>sequence via the originating / submitting organisation's chain of custody.<br />
<br />
Although 1 of the 2 <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">140K</span></b> prediction demonstration sequences was updated subsequent to the original submission, <b><span style="color: #660000;">no</span></b> clinical progression, treatment annotation or clinical outcome has <span style="color: #783f04;">yet</span> been made public corresponding to these very important cases that originated respectively from the <span style="color: #783f04;"><b>Alaska State Virology Lab</b></span> and <b><span style="color: #783f04;">WHO National Influenza Centre of Saint Petersburg, Russia</span></b>.<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI467365"></a><o:p></o:p></div>
<div class="c">
<div class="a">
<a href="http://www.blogger.com/" name="EPI459829"></a><o:p></o:p></div>
<div class="c">
. . . . Alaska04_C2_44M_2013_04_24 (</div>
<div class="c">
. . . . . . . . A/Alaska/04/2013<br />
. . . . . . . . <b><span style="color: #783f04;">Emergent H7N9 Correlation</span></b> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">131A</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/459829" target="_blank">EPI459829</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/143267" target="_blank">EPI_ISL_143267</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (10 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131A</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K</span></b>,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . syn215P (CCa),</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn481I (ATa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">489N</span></b>,</div>
<div class="c">
. . . . . . . . syn490V (GTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI460558"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaSamara73_C1St1_17F_2013_03_12 (</div>
<div class="c">
. . . . . . . . A/Samara/73/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Emergent H7N9 Correlation</span></b> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">128A</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/460558" target="_blank">EPI460558</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/143568" target="_blank">EPI_ISL_143568</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (10 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn36V (GTc),</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">128A</span></b> [<b style="color: #660000;">Emergent H7N9 </b>Count 02:<br />
. . . . . . . . . . . . . . . HongKong5942_M_36F_2013_11_30_s<br />
<div class="c">
. . . . . . . . . . . . . . . . . . . <a href="http://eh7n9.blogspot.com/2013/12/first-hong-kong-human-case-36f-repeats.html" target="_blank">Deposit Report</a><br />
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/490882" target="_blank">EPI490882</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151417" target="_blank">EPI_ISL_151417</a>,</div>
. . . . . . . . . . . . . . . ChinaGuangdongHuizhou1_51F_2013_08_10_s<br />
. . . . . . . . . . . . . . . . . . . <a href="http://eh7n9.blogspot.com/2013/12/first-guangdong-human-case-acquires.html" target="_blank">Deposit Report</a><br />
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476697" target="_blank">EPI476697</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148417" target="_blank">EPI_ISL_148417</a>],</div>
</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K</span></b>,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn175D (GAt),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn479G (GGg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI459828"></a><o:p></o:p></div>
<div class="c">
. . . . Alaska04_C2_44M_2013_04_24 (</div>
<div class="c">
. . . . . . . . A/Alaska/04/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/459828" target="_blank">EPI459828</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/143267" target="_blank">EPI_ISL_143267</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (6 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . syn28I (ATt),</div>
<div class="c">
. . . . . . . . syn68L (tTa),</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">151N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn167F (TTc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">197N</span></b>,</div>
<div class="c">
. . . . . . . . 221D,</div>
<div class="c">
. . . . . . . . syn248G (GGg),</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">392T</span></b>,</div>
<div class="c">
. . . . . . . . syn439T (ACc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI460559"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaSamara73_C1St1_17F_2013_03_12 (</div>
<div class="c">
. . . . . . . . A/Samara/73/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/460559" target="_blank">EPI460559</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/143568" target="_blank">EPI_ISL_143568</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (4 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">64K</span></b>,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . syn108L (CTa),</div>
<div class="c">
. . . . . . . . syn128K (AAa),</div>
<div class="c">
. . . . . . . . syn234N (AAc),</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn395Q (CAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">427T</span></b>,</div>
<div class="c">
. . . . . . . . syn439T (ACc))</div>
<br />
<div style="text-align: center;">
<b><span style="font-size: x-large;">Supporting Sequences</span></b></div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI490080"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">EXIR</span></b>_5M_<b><span style="color: maroon;">X233A</span></b>_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012 X-233A</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-12-02</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/490080" target="_blank">EPI490080</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151399" target="_blank">EPI_ISL_151399</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (11 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K</span></b>,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . 194P,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI490077"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">EXIR</span></b>_5M_<b><span style="color: maroon;">X233</span></b>_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012 X-233</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-12-02</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/490077" target="_blank">EPI490077</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151398" target="_blank">EPI_ISL_151398</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (11 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K</span></b>,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . 194P,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI489319"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">E4E8E1</span></b>_5M_<b><span style="color: maroon;">X233</span></b>_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012 X-233</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-11-29</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/489319" target="_blank">EPI489319</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151026" target="_blank">EPI_ISL_151026</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (11 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K</span></b>,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . 194P,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI490093"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">E5</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-12-02</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/490093" target="_blank">EPI490093</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151400" target="_blank">EPI_ISL_151400</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (11 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">194P mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI445712"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">C2</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-05-08</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/445712" target="_blank">EPI445712</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/140279" target="_blank">EPI_ISL_140279</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI436261"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">E4</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-03-14</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/436261" target="_blank">EPI436261</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138001" target="_blank">EPI_ISL_138001</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (11 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K</span></b>,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">194P mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426140"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">C3</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-02-25</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426140" target="_blank">EPI426140</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136409" target="_blank">EPI_ISL_136409</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI404965"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">E3</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2012-12-07</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/404965" target="_blank">EPI404965</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131823" target="_blank">EPI_ISL_131823</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (11 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140K mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">186G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219Y mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI404927"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">C1</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2012-12-07</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/404927" target="_blank">EPI404927</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131810" target="_blank">EPI_ISL_131810</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . #7Y,</div>
<div class="c">
. . . . . . . . syn8N (AAt),</div>
<div class="c">
. . . . . . . . 33R,</div>
<div class="c">
. . . . . . . . syn79F (TTt),</div>
<div class="c">
. . . . . . . . 128A,</div>
<div class="c">
. . . . . . . . 142G,</div>
<div class="c">
. . . . . . . . 145S,</div>
<div class="c">
. . . . . . . . 156H,</div>
<div class="c">
. . . . . . . . syn172E (GAg),</div>
<div class="c">
. . . . . . . . 186G,</div>
<div class="c">
. . . . . . . . 190D,</div>
<div class="c">
. . . . . . . . 278K,</div>
<div class="c">
. . . . . . . . syn281C (TGt),</div>
<div class="c">
. . . . . . . . syn402V (GTa),</div>
<div class="c">
. . . . . . . . syn416T (ACa),</div>
<div class="c">
. . . . . . . . syn455L (CTg),</div>
<div class="c">
. . . . . . . . syn492R (AGg))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI490079"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">EXIR</span></b>_5M_<b><span style="color: maroon;">X233A</span></b>_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012 X-233A</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-12-02</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/490079" target="_blank">EPI490079</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151399" target="_blank">EPI_ISL_151399</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (3 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI490076"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">EXIR</span></b>_5M_<b><span style="color: maroon;">X233</span></b>_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012 X-233</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-12-02</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/490076" target="_blank">EPI490076</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151398" target="_blank">EPI_ISL_151398</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (3 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI490092"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">E5</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-12-02</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/490092" target="_blank">EPI490092</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/151400" target="_blank">EPI_ISL_151400</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (3 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI445711"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">C2</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-05-08</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/445711" target="_blank">EPI445711</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/140279" target="_blank">EPI_ISL_140279</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (4 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . 151N mix wt,</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI436260"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">E4</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-03-14</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/436260" target="_blank">EPI436260</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138001" target="_blank">EPI_ISL_138001</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (3 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465202"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">C3</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2013-02-25<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465202" target="_blank">EPI465202</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136409" target="_blank">EPI_ISL_136409</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (4 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . 151N mix wt,</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI404964"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">E3</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2012-12-07</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/404964" target="_blank">EPI404964</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131823" target="_blank">EPI_ISL_131823</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (3 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . syn116V (GTa) mix wt,</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI404926"></a><o:p></o:p></div>
<div class="c">
. . . . NewYork39_<b><span style="color: #993300;">C1</span></b>_5M_2012_10_20 (</div>
<div class="c">
. . . . . . . . A/New York/39/2012</div>
<div class="c">
. . . . . . . . Original Submission: <b><span style="color: #993300;">2012-12-07</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/404926" target="_blank">EPI404926</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131810" target="_blank">EPI_ISL_131810</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (3 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn11G (GGc),</div>
<div class="c">
. . . . . . . . syn18S (TCc),</div>
<div class="c">
. . . . . . . . 43D,</div>
<div class="c">
. . . . . . . . syn106I (ATt),</div>
<div class="c">
. . . . . . . . 258E,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn300R (cGG),</div>
<div class="c">
. . . . . . . . 329N,</div>
<div class="c">
. . . . . . . . syn439T (ACc),</div>
<div class="c">
. . . . . . . . syn465N (AAc))</div>
<br />
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<div style="text-align: center;">
<span style="font-size: x-small;"><em><b><span style="color: #073763;">sH3N2</span></b> Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2013-12-02-23_34_14_375380 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><b>Supporting</b> Influenza <b><span style="color: #274e13;">HA</span></b> & <b><span style="color: #274e13;">NA</span></b> Segments elucidated at 2013-12-03-03_05_27_920970 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
<br />
<br />
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-73800134802302296442013-11-28T17:14:00.000-06:002013-12-03T08:00:43.961-06:00Prediction Demonstrated in USA of Triple Polymorphism pH1N1 HA 166N, 188T & 189T<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_09_09_CDC_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-11-28<br />
Last Update : 2013-11-29</span><br />
<div style="text-align: center;">
<hr style="width: 35%;" />
1 Predicted Sequence<br />
<hr style="width: 35%;" />
<br /></div>
The <strong><span style="color: #783f04;">United States CDC</span></strong> published a sequence on 2013-09-09 with <b><span style="color: #783f04;">Clade Crossing</span></b> evidence sampled on 2013-08-13 from a 57 year old male in Indiana. This <b>Indiana22_C2_57M_2013_08_13</b> sequence fulfills the triple polymorphism genetic change and timing of the <a href="http://pf11.blogspot.com/2013/02/ha-166n-polymorphism-potential-on-ph1n1.html" target="_blank">prediction</a> published on 2013-02-26 titled <span style="color: #274e13;"><b>HA</b></span><b style="color: #783f04;"> </b><span style="color: blue;"><b>166N</b></span><b style="color: #783f04;"> Polymorphism Potential on </b><b><span style="color: #4c1130;">pH1N1</span></b><b style="color: #783f04;"> Cross-Clade Background with Both </b><b><span style="color: blue;">188T</span></b><b style="color: #783f04;"> and </b><b><span style="color: blue;">189T</span></b>.<br />
<br />
No clinical progression, treatment annotation or clinical outcome has <span style="color: #783f04;">yet</span> been published corresponding to this very important case that originated from the <b><span style="color: #783f04;">Indiana State Department of Health Laboratories</span></b>.<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI467365"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana22_C2_57M_2013_08_13 (</div>
<div class="c">
. . . . . . . . A/Indiana/22/2013<br />
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span><span style="color: #274e13;">NA</span><span style="color: #993300;"> </span><span style="color: blue;">94I</span></b><br />
. . . . . . . . <b><span style="color: #660000;">Host Transition</span></b> Indication <b><span style="color: #274e13;">NA</span><span style="color: #993300;"> </span><span style="color: blue;">94I</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 189T</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467365" target="_blank">EPI467365</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145658" target="_blank">EPI_ISL_145658</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166N</span></b>,</div>
<div class="c">
. . . . . . . . syn174K (AAg),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">189T</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn500R (AGg)</span></b> [<b><span style="color: #4c1130;">pH1N1</span></b> <b><span style="color: maroon;">Rare</span></b>], </div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . 502K)</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI467364"></a><o:p></o:p></div>
<div class="c">
. . . . Indiana22_C2_57M_2013_08_13 (</div>
<div class="c">
. . . . . . . . A/Indiana/22/2013<br />
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span><span style="color: #274e13;">NA</span><span style="color: #993300;"> </span><span style="color: blue;">94I</span></b><br />
. . . . . . . . <b><span style="color: #660000;">Host Transition</span></b> Indication <b><span style="color: #274e13;">NA</span><span style="color: #993300;"> </span><span style="color: blue;">94I</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467364" target="_blank">EPI467364</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145658" target="_blank">EPI_ISL_145658</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">94I</span></b> [<b><span style="color: #4c1130;">pH1N1</span></b> <b><span style="color: #660000;">Rare</span></b>:<br />
. . . . . . . . . . . . . 10(9) Cases over 10 Sequences,<br />
. . . . . . . . . . . . . . . . . 2013 - Count 02<br />
. . . . . . . . . . . . . . . . . 2012 - Count 02<br />
. . . . . . . . . . . . . . . . . 2011 - Count 00<br />
. . . . . . . . . . . . . . . . . 2010 - Count 04<br />
. . . . . . . . . . . . . . . . . 2009 - Count 02],<br />
. . . . . . . . . . [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . [<b><span style="color: #660000;">Host Transition</span></b> Indication:<br />
. . . . . . . . . . . . . H7N1 <b>Passerine</b> Starling England,<br />
. . . . . . . . . . . . . H7N1 Parrot Ireland,<br />
. . . . . . . . . . . . . H7N1 Ostrich South Africa],</div>
<div class="c">
. . . . . . . . . . [H5N1 China Human wild type],<br />
. . . . . . . . . . [s2007 H1N1],<br />
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn156R (CGg),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S [H5N1],</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1 wild type],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt) [H5N1 wild type],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn243T</span></b> (ACt) [H5N1 China Human wild type], </div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa) [H5N1 wild type],</div>
. . . . . . . . syn378N (AAt) [H5N1 wild type])<br />
<br />
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<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-74630621701590608822013-11-21T06:53:00.000-06:002013-12-18T01:06:10.745-06:00Burkina Faso Off-Clade pH1N1 Sequences with Strong Homology to H7N9 Vaccine Candidate<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_11_19_CDC_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-11-21<br />
Last Update : 2013-12-18</span><br />
<div style="text-align: center;">
<b><span style="font-size: x-large;">Burkina Faso
</span></b><br />
<hr style="width: 35%;" />
3 Sequences<br />
<hr style="width: 35%;" />
<br /></div>
Three <b><span style="color: #660000;">Off-Clade</span></b> <b><span style="color: #4c1130;">Pandemic H1N1</span></b> sequences sampled from <b>Burkina Faso </b>were published recently at <b>GISAID</b> by the <span style="color: #783f04;"><b>United States CDC</b></span>. These West African sequences group with a small set of <b><span style="color: #660000;">highly divergent</span></b> sequences we have been following that carries an unusually strong polymorphic homology to H7N9. The set of distinct <b><span style="color: #4c1130;">pH1N1</span></b> <b><span style="color: #274e13;">HA</span></b> polymorphisms also displays a 51% homology to zoonotic H3N2 and a rather high 44% homology to the H7 serotypes.<br />
<br />
On Wednesday, November 20, 2013, the <b><span style="color: #783f04;">National Institute of Infectious Diseases of Japan </span></b>produced the details at <b>GISAID</b> of an <b>Investigational Vaccine Candidate</b> for <b><span style="color: #660000;">Emergent H7N9</span></b> based on the <b>Anhui1</b> base sequence. Evidently, when their candidate culturing process was modified with an <b><span style="color: #783f04;">initial</span></b> <b>Lewis Lung Carcinoma</b> passage, a <b><span style="color: #660000;">novel</span></b> polymorphism to Emergent H7N9 manifested [<a href="http://eh7n9.blogspot.com/2013/12/emergent-h7n9-vaccine-candidate.html" target="_blank">Deposit Report</a>].<br />
<br />
That H7N9 <b><span style="color: #783f04;">host switching</span></b> revision, <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">131T</span></b>, also features on this group of <b><span style="color: #783f04;">avian-centric</span></b> human <b><span style="color: #4c1130;">pH1N1</span></b> sequences we have been following. The <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">131T</span></b> has previously been seen in H7N9 Avian, the H7N7 human <b><span style="color: red;">fatality</span></b>, current H3N2 Human Seasonal (wild type), H1N1 Seasonal 2008, H1N1 Variant Human and in 1918. Two of the <b><span style="color: red;">fatalities</span></b> from the 2006 Egyptian H5N1 <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">230I</span></b>-bearing <b>Gharbiyah</b> cluster carry this <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">131T</span></b>. Animal occurrences include H3N2, avH1N1, H5N1 (including a parrot) and H6N1.<br />
<br />
We note when a Group 1 serotype (H1) develops <b><span style="color: #783f04;">contemporaneous homology</span></b> with Group 2 serotypes (H3 & H7). Identifying a reservoir for this small, but persisting, <b><span style="color: #660000;">Off-Clade</span></b> <b><span style="color: #4c1130;">pH1N1</span></b> set found primarily in western Africa would be useful in understanding the factors involved for <b><span style="color: #783f04;">minority</span></b> strain <b><span style="color: #783f04;">maturation</span></b>.<br />
<br />
The Burkina Faso details are annotated at the polymorphism level in the following sequence list. <br />
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI482169"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso875_C2_2013_02_26 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/875/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">131T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">NA</span><span style="color: red;"> </span><span style="color: blue;">386K</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482169" target="_blank">EPI482169</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149349" target="_blank">EPI_ISL_149349</a></div>
<div class="c">
. . . . . . . . 38 Polymorphisms (11 Amino and 27 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#11T</span></b> [avH1N1, zH3N2, H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn56G (GGc) [Emergent H7N9 Avian],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [avH1N1<sub>farm</sub>, zH3N2, 1918],</div>
<div class="c">
. . . . . . . . syn99I (ATt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate: </div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhou1_<b><span style="color: #783f04;">LLC</span></b>1E3_35F_2013_03_15<b><span style="color: red;">_f</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1<o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . <a href="http://eh7n9.blogspot.com/2013/12/emergent-h7n9-vaccine-candidate.html" target="_blank">Deposit Report</a><br />
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486492" target="_blank">EPI486492</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150198" target="_blank">EPI_ISL_150198</a></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region>
NIID <b>Lab-Derived</b>, </div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],</div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],<br />
. . . . . . . . . . . [H3N2 Human Seasonal],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . syn164L (CTt) [pH1N1 Upsilon],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">173R</span></b> [H7N9 Avian],</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . syn215P (CCa),</div>
<div class="c">
. . . . . . . . syn219I (ATt),</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [H7N9 Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor 266V gTC, gTT],</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . syn295F (TTc),</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn326S (TCc),</div>
<div class="c">
. . . . . . . . syn331G (GGt) [H7N9 Avian],</div>
<div class="c">
. . . . . . . . syn337A (GCt) [H7N9 Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [<b>Pennsylvania07_C1_1F_2013_10_02</b><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754" target="_blank">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . <b>DominicanRep7626_C2_34F_2013_06_15<span style="color: #993300;">_TmX</span><span style="color: maroon;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445" target="_blank">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn475D (GAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn486T (ACc)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H3N8 Avian],</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482162"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso876_C2_2013_02_26<b><span style="color: maroon;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/876/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">131T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">NA</span><span style="color: red;"> </span><span style="color: blue;">386K</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/482162" target="_blank">EPI482162</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149346" target="_blank">EPI_ISL_149346</a></div>
<div class="c">
. . . . . . . . 39 Polymorphisms (12 Amino and 27 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#11T</span></b> [avH1N1, zH3N2, H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13T</span></b> [H5N1, H9N2, H13],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn56G (GGc) [Emergent H7N9 Avian],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [avH1N1<sub>farm</sub>, zH3N2, 1918],</div>
<div class="c">
. . . . . . . . syn99I (ATt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate: </div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhou1_<b><span style="color: #783f04;">LLC</span></b>1E3_35F_2013_03_15<b><span style="color: red;">_f</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1<br />
. . . . . . . . . . . . . . . . . . . <a href="http://eh7n9.blogspot.com/2013/12/emergent-h7n9-vaccine-candidate.html" target="_blank">Deposit Report</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486492" target="_blank">EPI486492</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150198" target="_blank">EPI_ISL_150198</a></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region>
NIID <b>Lab-Derived</b>, </div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],</div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],<br />
. . . . . . . . . . . [H3N2 Human Seasonal],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E</span></b>,</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . syn215P (CCa),</div>
<div class="c">
. . . . . . . . syn219I (ATt),</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [H7N9 Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor 266V gTC, gTT],</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . syn295F (TTc),</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn326S (TCc),</div>
<div class="c">
. . . . . . . . syn331G (GGt) [H7N9 Avian],</div>
<div class="c">
. . . . . . . . syn337A (GCt) [H7N9 Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [<b>Pennsylvania07_C1_1F_2013_10_02</b><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754" target="_blank">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . <b>DominicanRep7626_C2_34F_2013_06_15<span style="color: #993300;">_TmX</span><span style="color: maroon;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445" target="_blank">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn425N (AAc)</span></b> [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . .[H7N7 Human Fatality],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn475D (GAc),</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn486T (ACc)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H3N8 Avian],</div>
</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484718"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso859_C1_2013_02_18 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/859/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">131T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">NA</span><span style="color: red;"> </span><span style="color: blue;">386K</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484718" target="_blank">EPI484718</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148736" target="_blank">EPI_ISL_148736</a></div>
<div class="c">
. . . . . . . . 37 Polymorphisms (10 Amino and 27 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#11T</span></b> [avH1N1, zH3N2, H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">35I</span></b> [avH1N1, zH3N2, H5N1],</div>
<div class="c">
. . . . . . . . syn56G (GGc) [Emergent H7N9 Avian],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">89E</span></b> [avH1N1<sub>farm</sub>, zH3N2, 1918],</div>
<div class="c">
. . . . . . . . syn99I (ATt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">131T</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . Investigational Vaccine Candidate: </div>
<div class="c">
. . . . . . . . . . . . . . . ChinaAnhuiChuzhou1_<b><span style="color: #783f04;">LLC</span></b>1E3_35F_2013_03_15<b><span style="color: red;">_f</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . A/Anhui/1/2013 NIIDRG-10.1<br />
. . . . . . . . . . . . . . . . . . . <a href="http://eh7n9.blogspot.com/2013/12/emergent-h7n9-vaccine-candidate.html" target="_blank">Deposit Report</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/486492" target="_blank">EPI486492</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150198" target="_blank">EPI_ISL_150198</a></div>
<div class="c">
. . . . . . . . . . . . . . . <st1:country-region>Japan</st1:country-region>
NIID <b>Lab-Derived</b>, </div>
<div class="c">
. . . . . . . . . . . . . . . Initial Passage in <b>Lewis Lung Carcinoma</b> culture],</div>
<div class="c">
. . . . . . . . . . . [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . [H7N7 Human Fatality],<br />
. . . . . . . . . . . [H3N2 Human Seasonal],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Human Seasonal 2008],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Human 2007, 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Swine 2011, 2012, 2013],</div>
<div class="c">
. . . . . . . . . . . [H1N1 Variant Mink 2012],</div>
<div class="c">
. . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn152I (ATt),</div>
<div class="c">
. . . . . . . . syn154L (CTg),</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn214K (AAa),</div>
<div class="c">
. . . . . . . . syn215P (CCa),</div>
<div class="c">
. . . . . . . . syn219I (ATt),</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn254P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">266A</span></b> [H7N9 Avian <st1:country-region>United
States</st1:country-region>:</div>
<div class="c">
. . . . . . . . . . . . . . . . First Base Donor 266V gTC, gTT],</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . syn295F (TTc),</div>
<div class="c">
. . . . . . . . syn301I (ATt),</div>
<div class="c">
. . . . . . . . syn326S (TCc),</div>
<div class="c">
. . . . . . . . syn331G (GGt) [H7N9 Avian],</div>
<div class="c">
. . . . . . . . syn337A (GCt) [H7N9 Avian United States],</div>
<div class="c">
. . . . . . . . . . . . . . . . . [<b>Pennsylvania07_C1_1F_2013_10_02</b><o:p></o:p></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/485754" target="_blank">EPI485754</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/150035" target="_blank">EPI_ISL_150035</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . <b>DominicanRep7626_C2_34F_2013_06_15<span style="color: #993300;">_TmX</span><span style="color: maroon;">_VxX</span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477445" target="_blank">EPI477445</a></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148743" target="_blank">EPI_ISL_148743</a>],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn425N (AAc)</span></b> [H7N9 Avian],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . .[H7N7 Human Fatality],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn433E (GAg)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . syn451K (AAa),</div>
<div class="c">
. . . . . . . . syn456L (cTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">463V</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn475D (GAc),</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn486T (ACc)</span></b> [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H3N8 Avian],</div>
</div>
<div class="c">
. . . . . . . . syn505G (GGa),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn526S (TCc),</div>
<div class="c">
. . . . . . . . syn527L (TTa))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI482168"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso875_C2_2013_02_26 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/875/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">131T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">NA</span><span style="color: red;"> </span><span style="color: blue;">386K</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482168" target="_blank">EPI482168</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149349" target="_blank">EPI_ISL_149349</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type<br />
. . . . . . . . . . . . . . First Base Donor <b><span style="color: blue;">ACc</span></b>, <b><span style="color: blue;">ACT</span></b>, <b><span style="color: blue;">Atg</span></b>],<br />
. . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn192T (ACc),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn370G (GGg),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<br />
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI482161"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso876_C2_2013_02_26<b><span style="color: maroon;">_VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/876/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">131T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">NA</span><span style="color: red;"> </span><span style="color: blue;">386K</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/482161" target="_blank">EPI482161</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149346" target="_blank">EPI_ISL_149346</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (5 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type<br />
. . . . . . . . . . . . . . First Base Donor <b><span style="color: blue;">ACc</span></b>, <b><span style="color: blue;">ACT</span></b>, <b><span style="color: blue;">Atg</span></b>],<br />
. . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn140L (tTA)</span></b>,</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn192T (ACc),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn370G (GGg),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<br />
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477427"></a><o:p></o:p></div>
<div class="c">
. . . . BurkinaFaso859_C1_2013_02_18 (</div>
<div class="c">
. . . . . . . . A/Burkina Faso/859/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">131T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 </span>Correlation<span style="color: #993300;"> </span></b><b><span style="color: #003300;">NA</span><span style="color: red;"> </span><span style="color: blue;">386K</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Off-Clade</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477427" target="_blank">EPI477427</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148736" target="_blank">EPI_ISL_148736</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (5 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type<br />
. . . . . . . . . . . . . . First Base Donor <b><span style="color: blue;">ACc</span></b>, <b><span style="color: blue;">ACT</span></b>, <b><span style="color: blue;">Atg</span></b>],<br />
. . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn47E (GAg)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74V</span></b>,</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn127L (cTG),</div>
<div class="c">
. . . . . . . . syn183A (GCc),</div>
<div class="c">
. . . . . . . . syn192T (ACc),</div>
<div class="c">
. . . . . . . . syn304V (GTt),</div>
<div class="c">
. . . . . . . . syn370G (GGg),</div>
<div class="c">
. . . . . . . . syn382G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">385T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">386K</span></b> [<b><span style="color: maroon;">Emergent H7N9</span></b> wild type],<br />
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993366;">pH1N1</span></b> <b><span style="color: #993300;">Upsilon</span></b>],</div>
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn433E (GAa))</div>
<br />
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<span style="font-size: x-small;"><em><b><span style="color: #4c1130;">pH1N1</span></b> Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2013-11-20-01_51_10_493570 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-68420519088688471692013-11-09T03:00:00.002-06:002013-12-17T16:22:10.714-06:00HA 142D: pH1N1 Vaccine Escape Diversity<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_blp_HA_142D_GaT_2013_11_02_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-11-09<br />
Last Update : 2013-12-17</span><br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Gain of Function Empiriks</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;">by</span></div>
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Polymorphism</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;"><b><span style="color: #783f04;">pH1N1</span></b> <b><span style="color: #274e13;">HA</span> <span style="color: blue;">142D</span></b></span></div>
<table align="center" border="0px" cellpadding="1px" cellspacing="0px" style="padding-bottom: 2px; padding-left: 5px; padding-right: 5px; padding-top: 2px; width: 90%;">
<tbody>
<tr>
<td style="vertical-align: top; width: 50%;"><table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; padding-bottom: 2px; padding-left: 40px; padding-right: 40px; padding-top: 2px; text-align: center;"><tbody>
<tr><td style="text-align: center; width: 100%;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/blp_HA_142D_GaT_2013_11_02_Map.html" target="_blank"><img alt="pH1N1 Vaccine Escape Diversity: HA 142D" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center; width: 100%;"><a href="http://genewurx.com/data/map/blp_HA_142D_GaT_2013_11_02_Map.html" target="_blank">Map - Active and Detailed</a></td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 50%;"><table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; padding-bottom: 2px; padding-left: 40px; padding-right: 40px; padding-top: 2px; text-align: center;"><tbody>
<tr><td style="text-align: center; width: 100%;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/dendro/ctree_fsc_blp_HA_142D_GaT_2013_11_02.html" target="_blank"><img alt="HA 142D: Features by SubClade" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgvWrdWk9zcRiB8o_D6hp6PkomPIfMLjeCWvBmOH5kEpc5U4mKSA0uHnxNyovPwFtJ4vjS7AbAjOYYbrM2xHsF4I2h7M7_yOg62kdMOKF4TIjJGPf9oQ4GoXBYnNNj8Wgi_ZBs2t0Sdg7Q/s1600/dendro_tb.jpg" title="Dendrogram of Clinical and Genetic Features" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center; width: 100%;"><a href="http://genewurx.com/data/dendro/ctree_fsc_blp_HA_142D_GaT_2013_11_02.html" target="_blank">Clinical and Genetic Features</a></td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
48 Cases over 52 Sequences<br />
<hr style="width: 35%;" />
</div>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Key Severity Indicators</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 50%;"><table align="center" border="0px" cellpadding="0px" cellspacing="0px" style="padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="float: center; width: 100%;">
<td colspan="3" style="vertical-align: top;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 20%;" title="Host Transition">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td>Host Transition</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Status</th></tr>
<tr style="font-size: 100%; text-align: center;"><td> <b><span style="color: sienna; text-shadow: darkslategray 1px .5px .5px;">PROBABLE</span></b></td></tr>
</tbody></table>
</td></tr>
<tr><td><br /></td></tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 30%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="Vaccine Escape Diversity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Vaccine Escape Diversity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">GenoType</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 156E</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 158E</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 159D</td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 225G</td><td style="text-align: center;">04</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #660000;">VxX</span></b> 225Y</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 40%;"><table align="center" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 80%;" title="Ambiguity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3">Ambiguity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Segment</th><th style="text-align: center;">Type</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">Hemagglutinin</span></b></td><td> Binary</td><td style="text-align: center;">17</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">Neuraminidase</span></b></td><td> Binary</td><td style="text-align: center;">03</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 30%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="Receptor Binding Variance">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Receptor Binding Variance</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Revision</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">189D</span></b></td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">190G</span></b></td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">193R</span></b></td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">194I</span></b></td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b></td><td style="text-align: center;">04</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225Y</span></b></td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">233H</span></b></td><td style="text-align: center;">10</td></tr>
</tbody></table>
</td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Human Variant Observations</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 85%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 45%;" title="Variant Human H1N1 2011">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2"><span style="color: #ffd966;">Variant</span><br />
Human H1N1 2011</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Name</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> Wisconsin28_55M_2011_12_01</td><td style="text-align: center;"> <a href="http://gisaid.org/EPI/346731" style="font-size: 80%;" target="_blank">EPI346731</a> </td></tr>
<tr style="font-size: 90%;"><td> Wisconsin28_C1_55M_2011_12_01</td><td style="text-align: center;"> <a href="http://gisaid.org/EPI/346916" style="font-size: 80%;" target="_blank">EPI346916</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="1px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 10px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 1px; padding-right: 1px; padding-top: 2px; width: 82%;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Notable pH1N1 Samples</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top;"><table align="center" border="0px" cellpadding="5px" cellspacing="0px" style="padding-bottom: 2px; padding-left: 5px; padding-right: 5px; padding-top: 2px;" title="block"><tbody>
<tr style="float: center;">
<td style="vertical-align: top;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 90%;" title="Severe and Fatal Disease Study">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Severe and Fatal Disease Study</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Name</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> ChinaShenzhen33_xM_2009_09_08</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI348003" style="font-size: 80%;" target="_blank">EPI348003</a> </td></tr>
<tr style="font-size: 90%;"><td> ChinaShenzhen28_xF_2009_08_31</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI348125" style="font-size: 80%;" target="_blank">EPI348125</a> </td></tr>
</tbody></table>
</td>
<td style="vertical-align: top;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 90%;" title="H7N9 Correlation - Hemagglutinin">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">H7N9 Correlation <span style="color: #274e13;">HA</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Name</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td style="font-size: 80%;"> PuertoRico05_C2_45M_2013_06_14_VxX </td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI465269" style="font-size: 80%;" target="_blank">EPI465269</a> </td></tr>
<tr style="font-size: 90%;"><td> Luxembourg20130134_2013_01_22</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI457408" style="font-size: 80%;" target="_blank">EPI457408</a> </td></tr>
<tr style="font-size: 90%;"><td> Virginia13_M1C1_46F_2012_08_21</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI404817" style="font-size: 80%;" target="_blank">EPI404817</a> </td></tr>
<tr style="font-size: 90%;"><td> Tanzania2085_E3_30F_2012_12_10</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI422630" style="font-size: 80%;" target="_blank">EPI422630</a> </td></tr>
<tr style="font-size: 90%;"><td> India2005_E3_2012_11_24</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI422601" style="font-size: 80%;" target="_blank">EPI422601</a> </td></tr>
<tr style="font-size: 90%;"><td> BelgiumG860_M1_xF_2012_11_08</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI417116" style="font-size: 80%;" target="_blank">EPI417116</a> </td></tr>
<tr style="font-size: 90%;"><td style="font-size: 80%;"> JapanSaitama289_M2+1_2011_04_02_VxX</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI329107" style="font-size: 80%;" target="_blank">EPI329107</a> </td></tr>
<tr style="font-size: 90%;"><td> ChinaShenzhen33_xM_2009_09_08</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI348003" style="font-size: 80%;" target="_blank">EPI348003</a> </td></tr>
<tr style="font-size: 90%;"><td> ChinaShenzhen28_xF_2009_08_31</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI348125" style="font-size: 80%;" target="_blank">EPI348125</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="2">Cross SeroType Analytics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 50%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="HA Set Polymorphic Homology">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3"><span style="color: #274e13;">HA</span> Set Polymorphic Homology</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">SeroType</th><th style="text-align: center;">Count</th><th style="text-align: center;">Percent</th></tr>
<tr style="font-size: 90%; text-align: center;"><td> H5N1</td><td style="text-align: center;">76</td><td style="text-align: center;">45%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> H7N7</td><td style="text-align: center;">60</td><td style="text-align: center;">36%</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 50%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Origin-Seeking HA 142D">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td>Origin-Seeking <span style="color: #274e13;">HA</span> <span style="color: blue;">142D</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">SeroType</th></tr>
<tr style="font-size: 90%;"><td> H5N1 2nd Base <span style="color: #783f04;"><b>Donor</b></span> <b><span style="color: blue;">142Q (CAG)</span></b></td></tr>
<tr style="font-size: 90%;"><td> H9N2</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Isolate Metrics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 25%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 50%;" title="Calendar">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Calendar</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Year</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2013</td><td>19</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2012</td><td>05</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2011</td><td>04</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2010</td><td>14</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2009</td><td>10</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 40%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Age Dynamic">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Age Dynamic</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Observation</th><th style="text-align: center;">Per<br />
Cent</th></tr>
<tr style="font-size: 90%;"><td> Child Aged 17 or Under</td><td style="text-align: center;">50%</td></tr>
<tr style="font-size: 90%;"><td> Child Aged 07 or Under</td><td style="text-align: center;">25%</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 35%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Clade<br />
Name</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">27</td></tr>
<tr style="font-size: 90%;"><td> UnCladed</td><td style="text-align: center;">23</td></tr>
<tr style="font-size: 90%;"><td> Clade1:189T</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> Clade5:208K_219V</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI484748"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloJaboticabal630177_<b><span style="color: #993300;">1M</span></b>_2013_09_30_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/6-30177/2013<br />
. . . . . . . . Treatment by <b><span style="color: #783f04;">Oseltamivir</span></b><br />
. . . . . . . . <a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html" target="_blank" title="Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape">Deposit Report</a><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484748" target="_blank">EPI484748</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149732" target="_blank">EPI_ISL_149732</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (12 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . #1T,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">115K</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Equine: Host Transition],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">142D</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>46</b> Cases over <b>50</b> Sequences,</div>
<div class="c">
. . . . . . . . . . . . . JapanNagasakiHA105_M_<b><span style="color: #993300;">13F</span></b>_2010_01_12</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">190G</span></b>],<br />
. . . . . . . . . . . . . [Propensity to Children:<br />
. . . . . . . . . . . . . . . . . . 52% - Age 17 or Under],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b><b><sub><span style="color: #984806; font-family: "Trebuchet MS";">υ</span></sub></b> Polymorphisms (15)],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #984806; font-family: "Trebuchet MS";">VxX</span></b> indicators </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . <b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b>
158E mix, 159D mix], </div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b> 166Q], </div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b> 189D, 189T_xL, <a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html" target="_blank">190G</a>], </div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #984806; font-family: "Trebuchet MS";">RBS</span></b> 225G (2), 226R, 233H],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location early <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b> 237I],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
Isolated from Blood (Serum)], </div>
<div class="c">
. . . . . . . . . . . . . [Studied with <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
Severe and Fatal cases], </div>
<div class="c">
. . . . . . . . . . . . . [<b>Wisconsin28_55M_2011_12_01</b></div>
<div class="c">
. . . . . . . . . . . . . . . . swine-like human H1N1 <b><span style="color: #632423; font-family: Trebuchet;">variant</span></b> case </div>
<div class="c">
. . . . . . . . . . . . . . . . . . with <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b><b><span style="color: #4f6228; font-family: "Trebuchet MS";"> PA</span></b> & <b><span style="color: #4f6228; font-family: "Trebuchet MS";">M</span></b> gene segments],<br />
. . . . . . . . . . . . . [H5N1 2<sup>nd</sup> Base Donor <b><span style="color: blue;">142Q (CAG)</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . [H13
LookAside<sub>u</sub>],</div>
<div class="c">
. . . . . . . . . . . . . [zH3N2 LookAside<sub>d2</sub>],</div>
<div class="c">
. . . . . . . . . . . . . [zH6N1 LookAside<sub>d2</sub>],</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b> [avH1N1 </div>
<div class="c">
. . . . . . . . . . . . . . . with HA #1T, syn34N (AAt), syn77S (AGt),<br />
. . . . . . . . . . . . . . . . . . . syn102E (GAa), syn156K (AAg),<br />
. . . . . . . . . . . . . . . . . . . 188T, syn258F (TTt), syn285P (CCt), syn306C (TGc),<br />
. . . . . . . . . . . . . . . . . . . 324I, syn333F (TTc), syn372Q (CAa), syn396V (GTg),<br />
. . . . . . . . . . . . . . . . . . . syn465N (AAt)],<br />
. . . . . . . . . . . . .[Virginia13_M1C1_46F_2012_08_21<br />
. . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">142D</span></b>, 188T, syn223V (GTa),<br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . syn338G (GGc), 377K, 454N],</div>
</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . syn285P (CCt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn306C (TGc),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [Wilson-Smith],</div>
<div class="c">
. . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>]</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467387"></a><o:p></o:p></div>
<div class="c">
. . . . Bolivia1351_C2_46M_<b><span style="color: maroon;">2013_07_31</span></b>_<b><span style="color: red;">VxX</span><span style="color: maroon;"> </span></b>(</div>
<div class="c">
. . . . . . . . A/Bolivia/1351/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225Y</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467387" target="_blank">EPI467387</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145666" target="_blank">EPI_ISL_145666</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (10 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn177L (CTa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225Y</span></b>,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454K,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467229"></a><o:p></o:p></div>
<div class="c">
. . . . ChileSantiago46965_C2C1_28M_2013_07_15 (</div>
<div class="c">
. . . . . . . . A/Santiago/46965/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467229" target="_blank">EPI467229</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145635" target="_blank">EPI_ISL_145635</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (9 Amino and 17 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn94Y (TAt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn190D (GAt),</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn455Q (CAa),</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465254"></a><o:p></o:p></div>
<div class="c">
. . . . Florida20_C1_47M_2013_07_07 (</div>
<div class="c">
. . . . . . . . A/Florida/20/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">GeoCombination</span></b> of South America and Puerto Rico<br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465254" target="_blank">EPI465254</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145023" target="_blank">EPI_ISL_145023</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (10 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">475N mix wt</span></b> [pH1N1 <b><span style="color: #660000;">Rare</span></b> ~ 40 Sequences],<br />
. . . . . . . . . . . . . . . . . [sH1N1 2009],<br />
. . . . . . . . . . . . . . . . . [sH3N2 2013],<br />
. . . . . . . . . . . . . . . . . [zH3N2 Hong Kong Passerine 2009],<br />
. . . . . . . . . . . . . . . . . [H3N8 Guangxi Commercial Poultry 2010],<br />
. . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . [H5 Avian],<br />
. . . . . . . . . . . . . . . . . [H6N1],<br />
. . . . . . . . . . . . . . . . . [H13],</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467370"></a><o:p></o:p></div>
<div class="c">
. . . . ArgentinaMarDelPlata10091_C1C1_xM_2013_07_04 (</div>
<div class="c">
. . . . . . . . A/Mar Del Plata/10091/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467370" target="_blank">EPI467370</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145660" target="_blank">EPI_ISL_145660</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465495"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina911_C1C1_60F_2013_07_02 (</div>
<div class="c">
. . . . . . . . A/Argentina/911/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465495" target="_blank">EPI465495</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145105" target="_blank">EPI_ISL_145105</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (9 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn120F (TTt),</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)<br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI484969"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay17_C1C1_55F_2013_07_01 (</div>
<div class="c">
. . . . . . . . A/Paraguay/17/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484969" target="_blank">EPI484969</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149777" target="_blank">EPI_ISL_149777</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (11 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87I</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">142D</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn419L (tTG)</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">528I</span></b> [H7N7 wild type],</div>
<div class="c">
. . . . . . . . . . . [H7N9 LookAside<sub>u</sub>],</div>
<div class="c">
. . . . . . . . . . . [avH1N1])</div>
</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467206"></a><o:p></o:p></div>
<div class="c">
. . . . Uruguay279_C1_xM_2013_06_21 (</div>
<div class="c">
. . . . . . . . A/Uruguay/279/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467206" target="_blank">EPI467206</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145630" target="_blank">EPI_ISL_145630</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (12 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#10M mix wt</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">57N</span></b> [Argentina508_S1C1_62M_2013_06_16],<br />
. . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">269F</span></b> [Argentina508_S1C1_62M_2013_06_16],<br />
. . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . . . . . [H13],<br />
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465257"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina508_S1C1_62M_2013_06_16 (</div>
<div class="c">
. . . . . . . . A/Argentina/508/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465257" target="_blank">EPI465257</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145024" target="_blank">EPI_ISL_145024</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (12 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">57N</span></b> [Uruguay279_C1_xM_2013_06_21],<br />
. . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn129H (CAc),</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">264D</span></b> [pH1N1 <b><span style="color: #660000;">Rare</span></b>: <b>26</b> Cases over <b>28</b> Sequences,<br />
. . . . . . . . . . . . . . . ReEmergent Singular 2013,<br />
. . . . . . . . . . . . . . . Last in China 2010-01-04,<br />
. . . . . . . . . . . . . . . <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225E</span></b> Count 03,<br />
. . . . . . . . . . . . . . . <b><span style="color: #783f04;">US Military</span></b> Count 11:<br />
. . . . . . . . . . . . . . . . . . First pH1N1 <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<br />
. . . . . . . . . . . . . . . . . . <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225N</span></b>],<br />
. . . . . . . . . . . . [H6N1],</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">269F</span></b> [Uruguay279_C1_xM_2013_06_21],<br />
. . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . . . . . [H13],</div>
</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI468085"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico01_C2_<b><span style="color: #993300;">13F</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/01/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/468085" target="_blank">EPI468085</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145509" target="_blank">EPI_ISL_145509</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (9 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465459"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico03_E3_<b><span style="color: #993300;">7M</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/03/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465459" target="_blank">EPI465459</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145090" target="_blank">EPI_ISL_145090</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (10 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 226R,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465455"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico01_E3_<b><span style="color: #993300;">13F</span></b>_<b><span style="color: maroon;">2013_06_14</span></b>_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/01/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465455" target="_blank">EPI465455</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145088" target="_blank">EPI_ISL_145088</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (10 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465269"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico05_C2_45M_<b><span style="color: maroon;">2013_06_14</span></b>_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/05/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">159D</span></b><br />
. . . . . . . . <b><span style="color: #783f04;">Emergent H7N9 Correlation</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465269" target="_blank">EPI465269</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145028" target="_blank">EPI_ISL_145028</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (10 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E</span></b> [H5N1 wild type],</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">159D mix wt</span></b> [<b><span style="color: #783f04;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465102"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico03_C1_<b><span style="color: #993300;">7M</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/03/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465102" target="_blank">EPI465102</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144967" target="_blank">EPI_ISL_144967</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (10 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">437N mix wt</span></b> [pH1N1 <b><span style="color: #660000;">Rare</span></b>: <b>21</b> Cases over <b>22</b> Sequences,<br />
. . . . . . . . . . . . . . . . . . . . <b><span style="color: red;">Fatality</span></b> Russia 2009:<br />
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . RussiaArkhangelsk_CRIEGNY_2009_11_25_xL_<b><span style="color: red;">f</span></b>,<br />
. . . . . . . . . . . . . . . . . . . . . . <a href="http://pf11.blogspot.com/2010/07/93-human-fatality-rate-in-russia-driven.html#arkhangelsk" target="_blank" title="Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape">Deposit Report</a><br />
. . . . . . . . . . . . . . . . . . . . <b><span style="color: #660000;">TamiFlu Resistance</span></b> Taiwan 2011,<br />
. . . . . . . . . . . . . . . . . . . . Probable Youth Marker],</div>
</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465070"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico01_C1_<b><span style="color: #993300;">13F</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/01/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465070" target="_blank">EPI465070</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144956" target="_blank">EPI_ISL_144956</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (10 Amino and 16 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn352Y (TAt),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">440H mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465453"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina168_S1C1_xM_<b><span style="color: #993300;">2013_06_04</span></b>_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Argentina/168/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465453" target="_blank">EPI465453</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145087" target="_blank">EPI_ISL_145087</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (11 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324A mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn326S (TCc) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465711"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina102_C1C1_56F_2013_05_30 (</div>
<div class="c">
. . . . . . . . A/Argentina/102/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465711" target="_blank">EPI465711</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145086" target="_blank">EPI_ISL_145086</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (10 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn136T (ACa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn185P (CCg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (CTg),</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324A</span></b>,</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI462037"></a><o:p></o:p></div>
<div class="c">
. . . . Hungary17_M1E5M1_xF_<b><span style="color: #993300;">2013</span></b>_02_15_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Hungary/17/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">156E</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/462037" target="_blank">EPI462037</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144056" target="_blank">EPI_ISL_144056</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (10 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn47L (tTA),</div>
<div class="c">
. . . . . . . . syn58C (TGc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">156E</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">193R</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn361G (GGa),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn403L (tTG),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn527L (TTa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457408"></a><o:p></o:p></div>
<div class="c">
. . . . Luxembourg20130134_2013_01_22 (</div>
<div class="c">
. . . . . . . . A/Luxembourg/20130134/2013<br />
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/457408" target="_blank">EPI457408</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142843" target="_blank">EPI_ISL_142843</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (11 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . .<b><span style="color: blue;"> #6M</span></b> [<b><span style="color: #660000;">H9N2 Human</span></b>],<br />
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],<br />
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn#5L (CTg)</span></b> [<b><span style="color: #660000;">Emergent H7N9 wild type</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 <b><span style="color: red;">Human Fatality</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 Passerine],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#2L</span></b> [<b><span style="color: #660000;">neH7N9</span></b> wild type],<br />
. . . . . . . . . . . [H7N7 <b><span style="color: #660000;">Rare</span></b>: Sea <b><span style="color: #783f04;">Mammal</span></b> & Anser],<br />
. . . . . . . . . . . [H7N3 Pheasant],<br />
. . . . . . . . . . . [H7N3 Commercial Poultry],<br />
. . . . . . . . . . . [H7N2 <b>Ratite</b>],<br />
. . . . . . . . . . . [H7N1 <b>Ratite</b>],</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . .<b><span style="color: blue;"> 87G</span></b>,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . syn228G (GGa),</div>
<div class="c">
. . . . . . . . syn240G (GGg),</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn396V (GTg) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn420D (GAt) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">435D mix wt</span></b>, [<b><span style="color: #4c1130;">pH1N1</span></b> <b><span style="color: #660000;">Rare</span></b>: 1 Case,<br />
. . . . . . . . . . . . . . . . . . . . . . Singapore 2010],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn448L (TTg) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn465N (AAt) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">502K mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn515Q (CAa) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa528)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI422630"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania2085_E3_30F_2012_12_10 (</div>
<div class="c">
. . . . . . . . A/Tanzania/2085/2012</div>
<div class="c">
. . . . . . . . Clade2:188T with <b><span style="color: maroon;">Diverse</span></b> <b><span style="color: #003300;">Hemagglutinin</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/422630" target="_blank">EPI422630</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/135825" target="_blank">EPI_ISL_135825</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (12 Amino and 14 Silent)</div>
<div class="c">
<div class="c">
. . . . . . . .<b><span style="color: blue;"> #6M</span></b> [<b><span style="color: #660000;">H9N2 Human</span></b>],<br />
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],<br />
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn#5L (CTg)</span></b> [<b><span style="color: #660000;">Emergent H7N9 wild type</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 <b><span style="color: red;">Human Fatality</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 Passerine],</div>
</div>
<div class="c">
. . . . . . . . syn22V (GTg),</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b>,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">172R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">175K</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">189D</span></b>,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . 226R,</div>
<div class="c">
. . . . . . . . syn240G (GGg),</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn301I (ATa),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn515Q (CAa),</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI422601"></a><o:p></o:p></div>
<div class="c">
. . . . India2005_E3_2012_11_24 (</div>
<div class="c">
. . . . . . . . A/India/2005/2012<br />
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/422601" target="_blank">EPI422601</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/135815" target="_blank">EPI_ISL_135815</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (10 Amino and 13 Silent)</div>
<div class="c">
<div class="c">
. . . . . . . .<b><span style="color: blue;"> #6M</span></b> [<b><span style="color: #660000;">H9N2 Human</span></b>],<br />
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],<br />
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn#5L (CTg)</span></b> [<b><span style="color: #660000;">Emergent H7N9 wild type</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 <b><span style="color: red;">Human Fatality</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 Passerine],</div>
</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . syn66G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b>,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">194I</span></b>,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . syn240G (GGg),</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">430I</span></b> [<b><span style="color: #660000;">H7N9</span></b> 2011]</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn515Q (CAa),</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI417116"></a><o:p></o:p></div>
<div class="c">
. . . . BelgiumG860_M1_xF_2012_11_08 (</div>
<div class="c">
. . . . . . . . A/Belgium/G860/2012<br />
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/417116" target="_blank">EPI417116</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/134396" target="_blank">EPI_ISL_134396</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (8 Amino and 16 Silent)</div>
<div class="c">
<div class="c">
. . . . . . . .<b><span style="color: blue;"> #6M</span></b> [<b><span style="color: #660000;">H9N2 Human</span></b>],<br />
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],<br />
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn#5L (CTg)</span></b> [<b><span style="color: #660000;">Emergent H7N9 wild type</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 <b><span style="color: red;">Human Fatality</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 Passerine],</div>
</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . syn44L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b>,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . syn228G (GGa),</div>
<div class="c">
. . . . . . . . syn240G (GGg),</div>
<div class="c">
. . . . . . . . syn252V (GTa),</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn420D (GAt),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn515Q (CAa),</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI441661"></a><o:p></o:p></div>
<div class="c">
. . . . IndiaLKO2577_2012_09_22 (</div>
<div class="c">
. . . . . . . . A/India/LKO2577/2012</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/441661" target="_blank">EPI441661</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/139281" target="_blank">EPI_ISL_139281</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (4 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa132,</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . syn240G (GGg),</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa269)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI404817"></a><o:p></o:p></div>
<div class="c">
. . . . Virginia13_M1C1_46F_2012_08_21 (</div>
<div class="c">
. . . . . . . . A/Virginia/13/2012<br />
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation</span></b><br />
. . . . . . . . <b><span style="color: #660000;">Distant to Relative</span></b>:<br />
. . . . . . . . . . ~ India2005_E3_2012_11_24<br />
. . . . . . . . . . [<a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html#EPI422601" target="_blank">EPI422601</a>]</div>
<div class="c">
. . . . . . . . . . 09 Nucleotides<br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/404817" target="_blank">EPI404817</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131789" target="_blank">EPI_ISL_131789</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (11 Amino and 15 Silent)</div>
<div class="c">
<div class="c">
. . . . . . . .<b><span style="color: blue;"> #6M</span></b> [<b><span style="color: #660000;">H9N2 Human</span></b>],<br />
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],<br />
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn#5L (CTg)</span></b> [<b><span style="color: #660000;">Emergent H7N9 wild type</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 <b><span style="color: red;">Human Fatality</span></b>],<br />
. . . . . . . . . . . . . . . . . .[H7N7 Passerine],</div>
</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87G</span></b>,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">132D</span></b>,</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b> [avH1N1 </div>
<div class="c">
. . . . . . . . . . . . . . . with HA #1T, syn34N (AAt), syn77S (AGt),<br />
. . . . . . . . . . . . . . . . . . . syn102E (GAa), syn156K (AAg),<br />
. . . . . . . . . . . . . . . . . . . 188T, syn258F (TTt), syn285P (CCt), syn306C (TGc),<br />
. . . . . . . . . . . . . . . . . . . 324I, syn333F (TTc), syn372Q (CAa), syn396V (GTg),<br />
. . . . . . . . . . . . . . . . . . . syn465N (AAt)],<br />
. . . . . . . . . . . . .[BrazilSaoPauloJaboticabal630177_<b><span style="color: #993300;">1M</span></b>_2013_09_30_<b><span style="color: red;">s</span></b><br />
. . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">142D</span></b>, 188T, syn223V (GTa),<br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . syn338G (GGc), 377K, 454N],<br />
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . syn238E (GAa),</div>
<div class="c">
. . . . . . . . syn240G (GGg),</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">381T mix wt</span></b> [H7N7],</div>
<div class="c">
. . . . . . . . syn403L (tTG),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn515Q (CAa),</div>
<div class="c">
. . . . . . . . syn524A (GCt) [H5N1],</div>
<div class="c">
. . . . . . . . syn530V (GTg) [H6N1],</div>
<div class="c">
. . . . . . . . syn538F (TTt) [H5N1])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI346655"></a><o:p></o:p></div>
<div class="c">
. . . . SouthAfricaJohannesburg150_M1M1_46F_2011_07_10 (</div>
<div class="c">
. . . . . . . . A/Johannesburg/150/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Clade5:208K_219V</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/346655" target="_blank">EPI346655</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/99903" target="_blank">EPI_ISL_99903</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (8 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . syn82I (ATc),</div>
<div class="c">
. . . . . . . . syn93C (TGc),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn131S (TCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">141Q</span></b>,</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn170N (AAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219V</span></b>,</div>
<div class="c">
. . . . . . . . 252L,</div>
<div class="c">
. . . . . . . . syn307P (CCc),</div>
<div class="c">
. . . . . . . . 359A,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn446K (AAa),</div>
<div class="c">
. . . . . . . . syn512R (AGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI332676"></a><o:p></o:p></div>
<div class="c">
. . . . AustraliaBrisbane139_M4_59M_2011_04_07_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/BRISBANE/139/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/332676" target="_blank">EPI332676</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/95091" target="_blank">EPI_ISL_95091</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (7 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn316R (AGg),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn417G (GGg),</div>
<div class="c">
. . . . . . . . syn439D (GAt),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn538F (TTt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa548)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI329107"></a><o:p></o:p></div>
<div class="c">
. . . . JapanSaitama289_M2+1_2011_04_02_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/SAITAMA/289/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">159D</span></b><br />
. . . . . . . . <b><span style="color: #783f04;">Emergent H7N9 Correlation</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/329107" target="_blank">EPI329107</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/94426" target="_blank">EPI_ISL_94426</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (8 Amino and 5 Silent)</div>
<div class="c">
<div class="c">
. . . . . . . .<b><span style="color: blue;"> #6M</span></b> [<b><span style="color: #660000;">H9N2 Human</span></b>],<br />
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],<br />
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">76T</span></b>,</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">123A</span></b>,</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">159D mix wt</span></b> [<b><span style="color: #783f04;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn178V (GTa),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn292S (AGt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . HA Truncated after aa348)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI331324"></a><o:p></o:p></div>
<div class="c">
. . . . AustraliaVictoriaRythdale512_M1_46M_2011_02_04 (</div>
<div class="c">
. . . . . . . . A/VICTORIA/512/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/331324" target="_blank">EPI331324</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/94794" target="_blank">EPI_ISL_94794</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (5 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn343G (GGa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn398K (AAg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385493"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK376_C2_<b><span style="color: #993300;">14F</span></b>_2010_06_07 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK376/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385493" target="_blank">EPI385493</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124750" target="_blank">EPI_ISL_124750</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn18T (ACc),</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">115K</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span>,</b><br />
. . . . . . . . . . . . . BrazilSaoPauloJaboticabal630177_<b><span style="color: #993300;">1M</span></b>_2013_09_30_<b><span style="color: red;">s</span></b><br />
. . . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">142D</span></b>, 377K, syn537S (AGc)],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Equine: Host Transition],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn160S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385439"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP2864_<b><span style="color: #993300;">3F</span></b>_2010_06_03 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP2864/2010</div>
<div class="MsoNormal">
. . . . . . . . <b><span style="color: red;">Sepsis - Isolated from Blood</span></b><span style="font-family: Arial; font-size: 10.0pt;"><o:p></o:p></span></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385439" target="_blank">EPI385439</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124731" target="_blank">EPI_ISL_124731</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385418"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeSS34_C1_75F_2010_06_03_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Singapore/SS34/2010</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385418" target="_blank">EPI385418</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124723" target="_blank">EPI_ISL_124723</a></div>
<div class="c">
. . . . . . . . 9 Polymorphisms (4 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn160S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . syn272D (GAc),</div>
<div class="c">
. . . . . . . . syn339F (TTt),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385347"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP2301_<b><span style="color: #993300;">17F</span></b>_2010_05_17 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP2301/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385347" target="_blank">EPI385347</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124700" target="_blank">EPI_ISL_124700</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (3 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . syn62G (GGa),</div>
<div class="c">
. . . . . . . . syn64I (ATt),</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn160S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385211"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP1684_<b><span style="color: #993300;">11M</span></b>_2010_04_28 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP1684/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385211" target="_blank">EPI385211</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124656" target="_blank">EPI_ISL_124656</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">0A</span></b>,</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn160S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385172"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeTT150_C2_2010_04_26_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Singapore/TT150/2010</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385172" target="_blank">EPI385172</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124641" target="_blank">EPI_ISL_124641</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn160S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn482V (GTt),</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385256"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP1212_C1_19F_2010_04_12 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP1212/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385256" target="_blank">EPI385256</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124669" target="_blank">EPI_ISL_124669</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (3 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn155V (GTc),</div>
<div class="c">
. . . . . . . . syn160S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385125"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK111_C1_<b><span style="color: #993300;">11M</span></b>_2010_03_31 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK111/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385125" target="_blank">EPI385125</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124627" target="_blank">EPI_ISL_124627</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn160S (TCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385142"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK98_C1_<b><span style="color: #993300;">4F</span></b>_2010_03_08 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK98/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385142" target="_blank">EPI385142</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124632" target="_blank">EPI_ISL_124632</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385157"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK90_C1_<b><span style="color: #993300;">5M</span></b>_2010_03_02 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK90/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385157" target="_blank">EPI385157</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124637" target="_blank">EPI_ISL_124637</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">233H</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI249892"></a><o:p></o:p></div>
<div class="c">
. . . . JapanNagasakiHA1010_M_<b><span style="color: #993300;">13F</span></b>_2010_01_18 (</div>
<div class="c">
. . . . . . . . A/Nagasaki/HA-10-10/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/249892" target="_blank">EPI249892</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71896" target="_blank">EPI_ISL_71896</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn94Y (TAt),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn193S (AGc),</div>
<div class="c">
. . . . . . . . 298V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">307S</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn471Y (TAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI258140"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaGuangxiLonganSWL1921_C1_<b><span style="color: #993300;">15M</span></b>_2010_01_14 (</div>
<div class="c">
. . . . . . . . A/Guangxi-Longan/SWL1921/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/258140" target="_blank">EPI258140</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/75063" target="_blank">EPI_ISL_75063</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn175E (GAg),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn541C (TGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI249899"></a><o:p></o:p></div>
<div class="c">
. . . . JapanNagasakiHA105_M_<b><span style="color: #993300;">13F</span></b>_2010_01_12 (</div>
<div class="c">
. . . . . . . . A/Nagasaki/HA-10-5/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/249899" target="_blank">EPI249899</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71903" target="_blank">EPI_ISL_71903</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (4 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn94Y (TAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">142D</span></b> [pH1N1 <b><span style="color: #660000;">Rare</span></b>: <b>46</b> Cases over <b>50</b> Sequences,</div>
<div class="c">
. . . . . . . . . . . . BrazilSaoPauloJaboticabal630177_<b><span style="color: #993300;">1M</span></b>_2013_09_30_s,<br />
. . . . . . . . . . . . <a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html" target="_blank" title="Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape">Deposit Report</a>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">190G</span></b> [pH1N1 <b><span style="color: #660000;">Rare</span></b>: <b>17</b> Cases over <b>19</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html" target="_blank">map</a>),<br />
. . . . . . . . . . . . . . . . . . Fatalities,<br />
. . . . . . . . . . . . . . . . . . Vaccine Escapes,<br />
. . . . . . . . . . . . . . . . . . Infants],</div>
<div class="c">
. . . . . . . . syn193S (AGc),</div>
<div class="c">
. . . . . . . . 298V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">307S</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn471Y (TAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI249898"></a><o:p></o:p></div>
<div class="c">
. . . . JapanNagasakiHA104_M_<b><span style="color: #993300;">4F</span></b>_2010_01_04 (</div>
<div class="c">
. . . . . . . . A/Nagasaki/HA-10-4/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/249898" target="_blank">EPI249898</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71902" target="_blank">EPI_ISL_71902</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn94Y (TAt),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn193S (AGc),</div>
<div class="c">
. . . . . . . . 298V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">307S</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">340L</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">346E</span></b>,</div>
<div class="c">
. . . . . . . . syn471Y (TAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI252938"></a><o:p></o:p></div>
<div class="c">
. . . . TexasHouston<b><span style="color: #993300;">JMS</span></b>392_xM_2009_12_25 (</div>
<div class="c">
. . . . . . . . A/Texas/JMS392/2009</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Potential </span></b><st1:country-region><st1:place><b><span style="color: #993300;">US</span></b></st1:place></st1:country-region><b><span style="color: #993300;"> Military</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/252938" target="_blank">EPI252938</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/73523" target="_blank">EPI_ISL_73523</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (2 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 377K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI276604"></a><o:p></o:p></div>
<div class="c">
. . . . WashingtonDC<b><span style="color: #993300;">AF</span></b>2182_PMK1_29M_2009_12_02 (</div>
<div class="c">
. . . . . . . . A/District of Columbia/AF2182/2009</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">US Air Force</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/276604" target="_blank">EPI276604</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/78483" target="_blank">EPI_ISL_78483</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (4 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn137A (GCt),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">237I</span></b>,</div>
<div class="c">
. . . . . . . . syn270I (ATc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . HA Truncated after aa386)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI394485"></a><o:p></o:p></div>
<div class="c">
. . . . JapanTottoriST450_M_2009_12 (</div>
<div class="c">
. . . . . . . . A/Tottori/ST450/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/394485" target="_blank">EPI394485</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/128769" target="_blank">EPI_ISL_128769</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 377V,</div>
<div class="c">
. . . . . . . . syn413K (AAg),</div>
<div class="c">
. . . . . . . . syn426A (GCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">440F</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI336314"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandGerrardsCross94560148_E338_2009_11_04 (</div>
<div class="c">
. . . . . . . . A/England/94560148/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/336314" target="_blank">EPI336314</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/96338" target="_blank">EPI_ISL_96338</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (1 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn8I (ATc),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn428L (tTG))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI276511"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandGerrardsCross94560148_E390_2009_11_04 (</div>
<div class="c">
. . . . . . . . A/ENG/94560148/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/276511" target="_blank">EPI276511</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/78390" target="_blank">EPI_ISL_78390</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (1 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn8I (ATc),</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn428L (tTG))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI217263"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin51_C1C1_<b><span style="color: #993300;">5F</span></b>_2009_09_27 (</div>
<div class="c">
. . . . . . . . A/Wisconsin/51/2009</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Clade1:189T</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/217263" target="_blank">EPI217263</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/62361" target="_blank">EPI_ISL_62361</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (4 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">189T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn413K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">499K </span></b>[H5N1])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI348003"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaShenzhen33_xM_2009_09_08 (</div>
<div class="c">
. . . . . . . . A/Shenzhen/33/2009</div>
<div class="c">
. . . . . . . . Severe or Fatal disease study<br />
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/348003" target="_blank">EPI348003</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/100954" target="_blank">EPI_ISL_100954</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40N</span></b> [H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">56D</span></b> [H9N2],<br />
. . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn251L (tTA),</div>
<div class="c">
. . . . . . . . syn507K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI348125"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaShenzhen28_xF_2009_08_31 (</div>
<div class="c">
. . . . . . . . A/Shenzhen/28/2009</div>
<div class="c">
. . . . . . . . Severe or Fatal disease study</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/348125" target="_blank">EPI348125</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/101194" target="_blank">EPI_ISL_101194</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">40N</span></b> [H7N9 wild type],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">56D</span></b> [H9N2],<br />
. . . . . . . . . . . [H10N7],</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . syn251L (tTA),</div>
<div class="c">
. . . . . . . . syn507K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI335488"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPaulo70311_<b><span style="color: #993300;">7F</span></b>_2009_08_28 (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/70311/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/335488" target="_blank">EPI335488</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/95963" target="_blank">EPI_ISL_95963</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (4 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . #12E,</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">296H</span></b>,</div>
<div class="c">
. . . . . . . . syn480E (GAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI210532"></a><o:p></o:p></div>
<div class="c">
. . . . SlovakiaModra1156_2009_07_27 (</div>
<div class="c">
. . . . . . . . A/Modra/1156/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/210532" target="_blank">EPI210532</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/60278" target="_blank">EPI_ISL_60278</a></div>
<div class="c">
. . . . . . . . 1 Polymorphisms (1 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . 142D,</div>
<div class="c">
. . . . . . . . HA Truncated after aa389)</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI467386"></a><o:p></o:p></div>
<div class="c">
. . . . Bolivia1351_C2_46M_<b><span style="color: maroon;">2013_07_31</span></b>_<b><span style="color: red;">VxX</span><span style="color: maroon;"> </span></b>(</div>
<div class="c">
. . . . . . . . A/Bolivia/1351/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467386" target="_blank">EPI467386</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145666" target="_blank">EPI_ISL_145666</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (7 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . .<b><span style="color: blue;"> 232T</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">331N</span></b>,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467228"></a><o:p></o:p></div>
<div class="c">
. . . . ChileSantiago46965_C2C1_28M_2013_07_15 (</div>
<div class="c">
. . . . . . . . A/Santiago/46965/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467228" target="_blank">EPI467228</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145635" target="_blank">EPI_ISL_145635</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465253"></a><o:p></o:p></div>
<div class="c">
. . . . Florida20_C1_47M_2013_07_07 (</div>
<div class="c">
. . . . . . . . A/Florida/20/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465253" target="_blank">EPI465253</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145023" target="_blank">EPI_ISL_145023</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn201G (GGa),</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467369"></a><o:p></o:p></div>
<div class="c">
. . . . ArgentinaMarDelPlata10091_C1C1_xM_2013_07_04 (</div>
<div class="c">
. . . . . . . . A/Mar Del Plata/10091/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467369" target="_blank">EPI467369</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145660" target="_blank">EPI_ISL_145660</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465494"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina911_C1C1_60F_2013_07_02 (</div>
<div class="c">
. . . . . . . . A/Argentina/911/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465494" target="_blank">EPI465494</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145105" target="_blank">EPI_ISL_145105</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))<br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI484968"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay17_C1C1_55F_2013_07_01 (</div>
<div class="c">
. . . . . . . . A/Paraguay/17/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/484968" target="_blank">EPI484968</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149777" target="_blank">EPI_ISL_149777</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467205"></a><o:p></o:p></div>
<div class="c">
. . . . Uruguay279_C1_xM_2013_06_21 (</div>
<div class="c">
. . . . . . . . A/Uruguay/279/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467205" target="_blank">EPI467205</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145630" target="_blank">EPI_ISL_145630</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465256"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina508_S1C1_62M_2013_06_16 (</div>
<div class="c">
. . . . . . . . A/Argentina/508/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465256" target="_blank">EPI465256</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145024" target="_blank">EPI_ISL_145024</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI466914"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico01_C2_<b><span style="color: #993300;">13F</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/01/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/466914" target="_blank">EPI466914</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145509" target="_blank">EPI_ISL_145509</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">72I</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465458"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico03_E3_<b><span style="color: #993300;">7M</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/03/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465458" target="_blank">EPI465458</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145090" target="_blank">EPI_ISL_145090</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">72I</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465454"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico01_E3_<b><span style="color: #993300;">13F</span></b>_<b><span style="color: maroon;">2013_06_14</span></b>_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/01/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465454" target="_blank">EPI465454</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145088" target="_blank">EPI_ISL_145088</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">72I</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465268"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico05_C2_45M_<b><span style="color: maroon;">2013_06_14</span></b>_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/05/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465268" target="_blank">EPI465268</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145028" target="_blank">EPI_ISL_145028</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (6 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">72I</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn171N (AAt),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465101"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico03_C1_<b><span style="color: #993300;">7M</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/03/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465101" target="_blank">EPI465101</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144967" target="_blank">EPI_ISL_144967</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (6 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">72I</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465069"></a><o:p></o:p></div>
<div class="c">
. . . . PuertoRico01_C1_<b><span style="color: #993300;">13F</span></b>_2013_06_14 (</div>
<div class="c">
. . . . . . . . A/Puerto Rico/01/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465069" target="_blank">EPI465069</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144956" target="_blank">EPI_ISL_144956</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (7 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">72I</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">151N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465452"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina168_S1C1_xM_<b><span style="color: #993300;">2013_06_04</span></b>_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Argentina/168/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465452" target="_blank">EPI465452</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145087" target="_blank">EPI_ISL_145087</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465450"></a><o:p></o:p></div>
<div class="c">
. . . . Argentina102_C1C1_56F_2013_05_30 (</div>
<div class="c">
. . . . . . . . A/Argentina/102/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465450" target="_blank">EPI465450</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145086" target="_blank">EPI_ISL_145086</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn52S (AGt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn213T (ACg),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn349F (TTc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI462038"></a><o:p></o:p></div>
<div class="c">
. . . . Hungary17_M1E5M1_xF_<b><span style="color: #993300;">2013</span></b>_02_15_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Hungary/17/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/462038" target="_blank">EPI462038</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144056" target="_blank">EPI_ISL_144056</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (8 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">11S</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> Amino wild type <b><span style="color: blue;">11S TCA</span></b>],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn70S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">93S mix wt</span></b> [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">126S</span></b>,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457407"></a><o:p></o:p></div>
<div class="c">
. . . . Luxembourg20130134_2013_01_22 (</div>
<div class="c">
. . . . . . . . A/Luxembourg/20130134/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/457407" target="_blank">EPI457407</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142843" target="_blank">EPI_ISL_142843</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (8 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13I</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type<br />
. . . . . . . . . . . . . . First Base Donor <b><span style="color: blue;">ACc</span></b>, <b><span style="color: blue;">ACT</span></b>, <b><span style="color: blue;">Atg</span></b>],<br />
. . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">79P</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn131T (ACa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">191I</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type<br />
. . . . . . . . . . . . . . . First Base Donor <b><span style="color: blue;">ATG</span></b>],</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn274Y (TAc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI422629"></a><o:p></o:p></div>
<div class="c">
. . . . Tanzania2085_E3_30F_2012_12_10 (</div>
<div class="c">
. . . . . . . . A/Tanzania/2085/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/422629" target="_blank">EPI422629</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/135825" target="_blank">EPI_ISL_135825</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (7 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn67V (GTc),</div>
<div class="c">
. . . . . . . . syn96G (GGg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">321V</span></b>,</div>
<div class="c">
. . . . . . . . syn325N (AAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">354S</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI422600"></a><o:p></o:p></div>
<div class="c">
. . . . India2005_E3_2012_11_24 (</div>
<div class="c">
. . . . . . . . A/India/2005/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/422600" target="_blank">EPI422600</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/135815" target="_blank">EPI_ISL_135815</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (7 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn16T (ACg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">42D</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn162P (CCc),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">454D</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI417117"></a><o:p></o:p></div>
<div class="c">
. . . . BelgiumG860_M1_xF_2012_11_08 (</div>
<div class="c">
. . . . . . . . A/Belgium/G860/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/417117" target="_blank">EPI417117</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/134396" target="_blank">EPI_ISL_134396</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (6 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn145S (TCt)</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">163V</span></b>,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI404816"></a><o:p></o:p></div>
<div class="c">
. . . . Virginia13_M1C1_46F_2012_08_21 (</div>
<div class="c">
. . . . . . . . A/Virginia/13/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/404816" target="_blank">EPI404816</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131789" target="_blank">EPI_ISL_131789</a></div>
<div class="c">
. . . . . . . . 11 Polymorphisms (5 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn307N (AAt)</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn466T (ACt)</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI346656"></a><o:p></o:p></div>
<div class="c">
. . . . SouthAfricaJohannesburg150_M1M1_46F_2011_07_10 (</div>
<div class="c">
. . . . . . . . A/Johannesburg/150/2011</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/346656" target="_blank">EPI346656</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/99903" target="_blank">EPI_ISL_99903</a></div>
<div class="c">
. . . . . . . . 9 Polymorphisms (2 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn79S (TCg),</div>
<div class="c">
. . . . . . . . syn89S (TCt),</div>
<div class="c">
. . . . . . . . syn126P (CCt),</div>
<div class="c">
. . . . . . . . syn229S (TCc),</div>
<div class="c">
. . . . . . . . syn236G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">269I mix wt</span></b> [SingaporeKK376_C2_<b><span style="color: #993300;">14F</span></b>_2010_06_07],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">299A</span></b>,</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn405S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI332675"></a><o:p></o:p></div>
<div class="c">
. . . . AustraliaBrisbane139_M4_59M_2011_04_07_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/BRISBANE/139/2011</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/332675" target="_blank">EPI332675</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/95091" target="_blank">EPI_ISL_95091</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn4N (AAt),</div>
<div class="c">
. . . . . . . . syn5Q (CAg),</div>
<div class="c">
. . . . . . . . syn32I (ATt),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">145F</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . NA Truncated after aa465)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI334515"></a><o:p></o:p></div>
<div class="c">
. . . . JapanSaitama289_M2+1_2011_04_02_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/SAITAMA/289/2011</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/334515" target="_blank">EPI334515</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/94426" target="_blank">EPI_ISL_94426</a></div>
<div class="c">
. . . . . . . . 9 Polymorphisms (3 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn14C (TGc),</div>
<div class="c">
. . . . . . . . syn41G (GGa),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn281C (TGc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI331323"></a><o:p></o:p></div>
<div class="c">
. . . . AustraliaVictoriaRythdale512_M1_46M_2011_02_04 (</div>
<div class="c">
. . . . . . . . A/VICTORIA/512/2011</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/331323" target="_blank">EPI331323</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/94794" target="_blank">EPI_ISL_94794</a></div>
<div class="c">
. . . . . . . . 9 Polymorphisms (5 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn4N (AAt),</div>
<div class="c">
. . . . . . . . syn5Q (CAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">23M</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 220K,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . NA Truncated after aa465)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385494"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK376_C2_<b><span style="color: #993300;">14F</span></b>_2010_06_07 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK376/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385494" target="_blank">EPI385494</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124750" target="_blank">EPI_ISL_124750</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (1 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">269I </span></b>[SouthAfricaJohannesburg150_M1M1_46F_2011_07_10])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385440"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP2864_<b><span style="color: #993300;">3F</span></b>_2010_06_03 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP2864/2010</div>
<div class="MsoNormal">
. . . . . . . . <b><span style="color: red;">Sepsis - Isolated from Blood</span></b><span style="font-family: Arial; font-size: 10.0pt;"><o:p></o:p></span></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385440" target="_blank">EPI385440</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124731" target="_blank">EPI_ISL_124731</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385420"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeSS34_C1_75F_2010_06_03_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Singapore/SS34/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385420" target="_blank">EPI385420</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124723" target="_blank">EPI_ISL_124723</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385348"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP2301_<b><span style="color: #993300;">17F</span></b>_2010_05_17 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP2301/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385348" target="_blank">EPI385348</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124700" target="_blank">EPI_ISL_124700</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (0 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa),</div>
<div class="c">
. . . . . . . . syn430R (aGA))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385212"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP1684_<b><span style="color: #993300;">11M</span></b>_2010_04_28 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP1684/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385212" target="_blank">EPI385212</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124656" target="_blank">EPI_ISL_124656</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (1 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">412Q</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385174"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeTT150_C2_2010_04_26_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Singapore/TT150/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385174" target="_blank">EPI385174</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124641" target="_blank">EPI_ISL_124641</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (0 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa),</div>
<div class="c">
. . . . . . . . syn295N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385258"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP1212_C1_19F_2010_04_12 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP1212/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385258" target="_blank">EPI385258</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124669" target="_blank">EPI_ISL_124669</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385126"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK111_C1_<b><span style="color: #993300;">11M</span></b>_2010_03_31 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK111/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385126" target="_blank">EPI385126</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124627" target="_blank">EPI_ISL_124627</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385143"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK98_C1_<b><span style="color: #993300;">4F</span></b>_2010_03_08 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK98/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385143" target="_blank">EPI385143</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124632" target="_blank">EPI_ISL_124632</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385158"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeKK90_C1_<b><span style="color: #993300;">5M</span></b>_2010_03_02 (</div>
<div class="c">
. . . . . . . . A/Singapore/KK90/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385158" target="_blank">EPI385158</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124637" target="_blank">EPI_ISL_124637</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn86A (GCt),</div>
<div class="c">
. . . . . . . . syn207K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI258139"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaGuangxiLonganSWL1921_C1_<b><span style="color: #993300;">15M</span></b>_2010_01_14 (</div>
<div class="c">
. . . . . . . . A/Guangxi-Longan/SWL1921/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/258139" target="_blank">EPI258139</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/75063" target="_blank">EPI_ISL_75063</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn275H (CAt),</div>
<div class="c">
. . . . . . . . syn398E (GAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI252940"></a><o:p></o:p></div>
<div class="c">
. . . . TexasHouston<b><span style="color: #993300;">JMS</span></b>392_xM_2009_12_25 (</div>
<div class="c">
. . . . . . . . A/Texas/JMS392/2009</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Potential </span></b><st1:country-region><st1:place><b><span style="color: #993300;">US</span></b></st1:place></st1:country-region><b><span style="color: #993300;"> Military</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/252940" target="_blank">EPI252940</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/73523" target="_blank">EPI_ISL_73523</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . syn132F (TTt),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">366N</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI217262"></a><o:p></o:p></div>
<div class="c">
. . . . Wisconsin51_C1C1_<b><span style="color: #993300;">5F</span></b>_2009_09_27 (</div>
<div class="c">
. . . . . . . . A/Wisconsin/51/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/217262" target="_blank">EPI217262</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/62361" target="_blank">EPI_ISL_62361</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (1 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">382E</span></b>,</div>
<div class="c">
. . . . . . . . syn407V (GTc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI210533"></a><o:p></o:p></div>
<div class="c">
. . . . SlovakiaModra1156_2009_07_27 (</div>
<div class="c">
. . . . . . . . A/Modra/1156/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/210533" target="_blank">EPI210533</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/60278" target="_blank">EPI_ISL_60278</a></div>
<div class="c">
. . . . . . . . 1 Polymorphisms (0 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . syn64Q (CAa))</div>
<br />
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<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2013-11-08-02_14_41_307200 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2013. </em></span>
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<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-28384080262470699912013-11-07T01:56:00.001-06:002013-12-17T15:57:46.900-06:00Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_11_01_Brazil_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-11-07<br />
Last Update : 2013-12-17</span><br />
<br />
<table align="center" border="0px" cellpadding="1px" cellspacing="0px" style="padding-bottom: 2px; padding-left: 5px; padding-right: 5px; padding-top: 2px; width: 90%;">
<tbody>
<tr>
<td style="vertical-align: top; width: 50%;"><table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; padding-bottom: 2px; padding-left: 40px; padding-right: 40px; padding-top: 2px; text-align: center;"><tbody>
<tr><td style="text-align: center; width: 100%;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2013_11_01_Brazil_Map.html" target="_blank"><img alt="Brazil: pH1N1 Extreme Variant & Infant Vaccine Escape" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center; width: 100%;"><a href="http://genewurx.com/data/map/2013_11_01_Brazil_Map.html" target="_blank">Map - Active and Detailed</a></td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 50%;"><table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; padding-bottom: 2px; padding-left: 40px; padding-right: 40px; padding-top: 2px; text-align: center;"><tbody>
<tr><td style="text-align: center; width: 100%;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/dendro/ctree_fsc_2013_11_01_Brazil.html" target="_blank"><img alt="Brazil 2013-11-01: Features by SubClade" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgvWrdWk9zcRiB8o_D6hp6PkomPIfMLjeCWvBmOH5kEpc5U4mKSA0uHnxNyovPwFtJ4vjS7AbAjOYYbrM2xHsF4I2h7M7_yOg62kdMOKF4TIjJGPf9oQ4GoXBYnNNj8Wgi_ZBs2t0Sdg7Q/s1600/dendro_tb.jpg" title="Dendrogram of Clinical and Genetic Features" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center; width: 100%;"><a href="http://genewurx.com/data/dendro/ctree_fsc_2013_11_01_Brazil.html" target="_blank">Clinical and Genetic Features</a></td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
9 <b><span style="color: #274e13;">HA</span></b> Sequences<br />
<hr style="width: 35%;" />
</div>
<br />
Between 2013-10-31 and 2013-11-01, the <span style="color: #783f04;"><b>Instituto Adolfo Lutz of Brazil</b></span> did the Northern Hemisphere a great service by releasing nine <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> <b><span style="color: #274e13;">Hemagglutinin </span></b>sequences at <strong>GISAID </strong>sampled during 2013 (July to October) and covering the <b>Federal District</b>, <b>Mato Grosso</b> and <b>Sao Paulo</b>. No <b><span style="color: #274e13;">Neuraminidase</span></b> segments were released. <br />
<br />
<table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 40%;" title="Vaccine Escape Diversity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3">Vaccine Escape Diversity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Type</th><th style="text-align: center;">Observation</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> PhenoTypic</td><td> <b><span style="color: #660000;">Vaccinated</span></b> 2013</td><td style="text-align: center;">03</td></tr>
<tr style="font-size: 90%;"><td> GenoTypic</td><td> <b><span style="color: #660000;">VxX</span></b> 225G</td><td style="text-align: center;">01</td></tr>
</tbody></table>
<br />
We applaud the researchers' precision and detail in annotating these very important sentinels to the Northern Hemisphere season for discussion alongside their deposit earlier this month of <a href="http://pf11.blogspot.com/2013/10/vaccine-escape-in-sao-paulo-brazil.html" target="_blank">one</a> <b><span style="color: #660000;">Vaccine Escape</span></b> in an adult. Attention to the specific geography of each case is much appreciated in this age of woefully inadequate public health management of human Influenza investigations.<br />
<br />
Sequences for three <b><span style="color: #783f04;">infant</span></b> patients were notated and three patients were described as <b><span style="color: #660000;">having been vaccinated</span></b> in <b>2013</b>, including two of the infants. <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b> GenoTypic <b><span style="color: #660000;">Vaccine Escape</span></b> is noted on a <b>RibeiraoPreto</b> case [<a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html#EPI484749" style="font-size: 80%;" target="_blank">EPI484749</a>] that also carries the rare <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">263S</span></b> (<a href="http://pf11.blogspot.com/2013/11/ha-263s-emergent-h7n9-ph1n1-receptor.html" style="font-size: 90%;" target="_blank">GoF·E</a>), a homolog to <b><span style="color: #660000;">Emergent H7N9</span></b>. The<b><span style="color: #783f04;"> infant</span></b> <b><span style="color: #660000;">Vaccine Escape</span></b> case from <b>Sorocaba</b> [<a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html#EPI484739" style="font-size: 80%;" target="_blank">EPI484739</a>] is instructive with an aggregation of two very dangerous genetic revisions <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">46R</span></b> (<a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html" style="font-size: 90%;" target="_blank">GoF·E</a>) and <b><span style="color: #274e13;">HA </span><span style="color: blue;">190G</span></b> (<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html" style="font-size: 90%;" target="_blank">GoF·E</a>).<br />
<br />
<table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 25%;" title="Receptor Binding Variance">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Receptor Binding Variance</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Revision</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">190G</span></b></td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b></td><td style="text-align: center;">01</td></tr>
</tbody></table>
<br />
The <b><span style="color: #274e13;">HA</span></b> segments on deposit indicate an <b><span style="color: #783f04;">aggressive </span></b>acquisition strategy from avian influences including <b><span style="color: #660000;">Emergent H7N9</span></b>. The most recent sequence, a fragment from <b>Moji Das Cruzes</b> in mid-October [<a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html#EPI484751" style="font-size: 80%;" target="_blank">EPI484751</a>], demonstrates the tendency with <b><span style="color: #783f04;">extreme variance</span></b> from amino acid positions 175 to 188, generating not only <b><span style="color: #783f04;">novelty</span></b> in the <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> reservoir, but also <b><span style="color: #783f04;">novelty</span></b> across known Influenza serotypes. Markers from earlier pandemic <b><span style="color: #660000;">death </span></b>waves are evident alongside new revisions homologous to <b><span style="color: #660000;">Emergent H7N9</span></b> (<b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">187S</span></b>).<br />
<br />
The infant from <b>Jaboticabal </b>[<a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html#EPI484748" style="font-size: 80%;" target="_blank">EPI484748</a>] carried a <b>Clade2:188T</b> background with <b><span style="color: #274e13;">HA</span></b> <b style="color: blue;">142D</b> (<a href="http://pf11.blogspot.com/2013/11/ha-142d-ph1n1-vaccine-escape-diversity.html" style="font-size: 90%;" target="_blank">GoF·E</a>), a value and position associated with mishap and malady in <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>. Our 2011 discussion on <b><span style="color: #274e13;">HA</span></b> <b style="color: blue;">142V, </b><b>100% <span style="color: #660000;">Case Fatality Rate</span> on pH1N1 Clade2 Lineage</b> (<a href="http://pf11.blogspot.com/2011/10/100-case-fatality-rate-on-ph1n1-clade2.html" style="font-size: 90%;" target="_blank">Deposit Report</a>), continues to hold true when <b><span style="color: #274e13;">HA</span></b> <b style="color: blue;">142V</b> is found with <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">syn204A</span></b>. This deposit's rare <b><span style="color: #274e13;">HA</span></b> <b style="color: blue;">142D </b>variation appears to be paired for the first time in the <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b> reservoir with a <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">syn141H (CAc), </span></b>suggesting an <b><span style="color: #783f04;">origin</span></b> of the two revisions from H5N1 with a second base donation to form <b><span style="color: #274e13;">HA</span></b> <b style="color: blue;">142D (GaT) </b>from the H5N1 wild type <b><span style="color: blue;">Glutamine (CAG)</span></b> at aa142. The <b><span style="color: #274e13;">HA</span></b> <b style="color: blue;">142D</b> was also seen on <b>Wisconsin28_55M_2011_12_01</b>, a swine-like human H1N1 variant case.<br />
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px; width: 80%;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="2">Cross SeroType Analytics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 33%;" title="HA Set Polymorphic Homology">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3"><span style="color: #274e13;">HA</span> Set Polymorphic Homology</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">SeroType</th><th style="text-align: center;">Count</th><th style="text-align: center;">Percent</th></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> avH1N1</td><td style="text-align: center;">49</td><td style="text-align: center;">64%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> avH1N1<sub>farm</sub></td><td style="text-align: center;">37</td><td style="text-align: center;">49%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> H6N1</td><td style="text-align: center;">35</td><td style="text-align: center;">46%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> H5N1</td><td style="text-align: center;">32</td><td style="text-align: center;">42%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> H7N7</td><td style="text-align: center;">28</td><td style="text-align: center;">37%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> H9N2</td><td style="text-align: center;">26</td><td style="text-align: center;">34%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> zH3N2</td><td style="text-align: center;">25</td><td style="text-align: center;">33%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> H13</td><td style="text-align: center;">21</td><td style="text-align: center;">28%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> H10N7</td><td style="text-align: center;">16</td><td style="text-align: center;">21%</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b><b><sub><span style="color: #984806; font-family: "Trebuchet MS";">υ </span></sub></b>involvement is evident in this deposit with homology to <b>16%</b> of the distinct <b><span style="color: #274e13;">HA</span></b> polymorphisms. <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">syn31H (CAt)</span></b> is noted at <b>Cuiaba</b> (36 year old male) [<a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html#EPI484750" style="font-size: 80%;" target="_blank">EPI484750</a>] and at the <b>Federal District</b> (80 year old female) [<a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html#EPI484747" style="font-size: 80%;" target="_blank">EPI484747</a>]. Eight of the nine sequences in this deposit, including these two, have adopted the <b><span style="color: #984806;">Upsilon</span></b> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">259T</span></b>.<br />
<br />
This small set of <b><span style="color: #274e13;">Hemagglutinin</span></b> sequences provides an early look at the viral reservoir and acquisition patterns as the Northern Hemisphere winter arrives. The increased genetic variance in children and women of childbearing age is an area that merits additional research.<br />
<br />
<table align="center" border="0px" cellpadding="5px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 3px; padding-right: 3px; padding-top: 2px; width: 70%;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="2">Isolate Metrics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 41%;"><table align="center" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 50%;" title="Calendar 2013">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Calendar 2013</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Month</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> October </td><td>03</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> September </td><td>03</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> August </td><td>01</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> July </td><td>02</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 59%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 66%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">CladeName</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">07</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> UnCladed</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<div style="text-align: center;">
<b><span style="font-size: x-large;"><span style="color: #274e13;">HA</span> Polymorphisms</span></b></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI484751"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloMojiDasCruzes78453_34M_<b><span style="color: #993300;">2013_10_14</span></b>_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/78453/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">187S</span></b><br />
. . . . . . . . <b><span style="color: #993300;">Extreme Variance</span> <span style="color: #003300;">HA</span>
<span style="color: blue;">aa175 to aa188</span><o:p></o:p></b></div>
<div class="c">
<div class="c">
. . . . . . . . 5’ Truncated, Potential Primer MisMatch</div>
<div class="c">
. . . . . . . . 3’ from Widely Circulating Clade 2: 188T</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">Off-Clade</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484751" target="_blank">EPI484751</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149735" target="_blank">EPI_ISL_149735</a></div>
<div class="c">
. . . . . . . . 29 Polymorphisms (17 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">HA Truncated before aa159</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn168Y (TAt) [pH1N1 <b><span style="color: red;">Fatalities</span></b> and <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G </span></b>/<b><span style="color: blue;"> 225N<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . Ukraine <a href="http://pf11-trends-and-issues.blogspot.com/2009/11/ukraine-expected-to-surpass-1-million.html" target="_blank">Flash</a>Fire <a href="http://pf11.blogspot.com/2010/01/ukraine-trends-toward-1000-fatalities.html" target="_blank">2009</a>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . <st1:country-region>Russia</st1:country-region>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [Emergent H7N9 wild type],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H7N7 Rare: Sea Mammal],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H7N3 Avian</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . including US
Anser 2010],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H9N2 Avian],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . [H1N1 Human 2008 wt],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">169V</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">175D</span></b> [H5N1 wt],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Human Fatality LookAside<sub>u</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N9 Avian LookAside<sub>u</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [H13N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">176I</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">178L</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">180R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">181V</span></b> [H7N9 Avian LookAside<sub>d</sub>],</div>
<div class="c">
. . . . . . . . . . . . [zH3N2 LookAside<sub>d</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">182F</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">183L</span></b> [H13N2 LookAside<sub>u</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">184Q</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn185P (CCt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">187S (tCc)</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type:</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">187S / 196S (TCA)</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188R</span></b> [avH1N1 LookAside<sub>d</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H6N1 LookAside<sub>d</sub>],</div>
<div class="c">
. . . . . . . . . . . . [zH3N2 LookAside<sub>d</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn346G (GGa)</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn383N (AAc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484749"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloRibeiraoPreto630359_44M_2013_10_05_<b><span style="color: red;">VxX</span></b>_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/6-30359/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">263S</span></b><br />
. . . . . . . . Treatment by <b><span style="color: #783f04;">Oseltamivir</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484749" target="_blank">EPI484749</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149733" target="_blank">EPI_ISL_149733</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (10 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . syn237V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">263S</span></b> [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wt],<br />
. . . . . . . . . . . . [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>7</b> Cases over <b>9</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_263S_AgT_2013_11_04_Map.html" target="_blank">map</a>),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . Ukraine5794_C2M1_<b><span style="color: #993300;">18F</span></b>_2013_02_20
</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">227G</span></b> and <b><span style="color: #003300;">NA</span><span style="color: blue;"> 222D,<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . SingaporeGP1112_C2_<b><span style="color: #993300;">9M</span></b>_2010_04_06</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">208K</span></b> and <b><span style="color: #003300;">NA</span><span style="color: blue;"> 257K,<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . SpainLaRiojaRR6490_<b><span style="color: #993300;">15F</span></b>_2009_11_03</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">291I</span></b> and <b><span style="color: #003300;">NA</span><span style="color: blue;"> 393V,<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . US Air Force 2009],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Human Fatality Amino wt],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn513I (ATc),</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484747"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilDistritoFederalBrasilia78502_80F_2013_10_03_s (</div>
<div class="c">
. . . . . . . . A/Distrito Federal/78502/2013</div>
<div class="c">
. . . . . . . . Treatment by <b><span style="color: #783f04;">Oseltamivir</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484747" target="_blank">EPI484747</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149731" target="_blank">EPI_ISL_149731</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (9 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . #2Y,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn31H (CAt)</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . Fatalities: </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . US Child
(2M), </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . <st1:country-region>Mexico</st1:country-region>
(29M),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . <st1:country-region>Ecuador</st1:country-region>
(35F),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . Hospitalised:</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . <st1:country-region>Ecuador</st1:country-region>
(34M, 51M),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . TamiFlu Resistance:
US],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1 <st1:country-region>China</st1:country-region>
Fatality 2005 (35M)],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1 <st1:country-region>Egypt</st1:country-region>
Child 2009 (13M)],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [WSN, WSZ with <b><span style="color: #003300;">HA</span> <span style="color: blue;">159D</span></b>],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . syn265G (GGg),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn458N (AAt),</div>
<div class="c">
. . . . . . . . syn477T (ACt),</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484748"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloJaboticabal630177_<b><span style="color: #993300;">1M</span></b>_2013_09_30_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/6-30177/2013<br />
. . . . . . . . Treatment by <b><span style="color: #783f04;">Oseltamivir</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484748" target="_blank">EPI484748</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149732" target="_blank">EPI_ISL_149732</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (12 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . #1T,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">115K</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span>,</b><br />
. . . . . . . . . . . . . SingaporeKK376_C2_<b><span style="color: #993300;">14F</span></b>_2010_06_07<br />
. . . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">142D</span></b>, 377K, syn537S (AGc)],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Equine: Host Transition],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">142D</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>47</b> Cases over <b>51</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_142D_GaT_2013_11_02_Map.html" target="_blank">map</a>),</div>
<div class="c">
. . . . . . . . . . . . . JapanNagasakiHA105_M_<b><span style="color: #993300;">13F</span></b>_2010_01_12</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">190G</span></b>],<br />
. . . . . . . . . . . . . [Propensity to Children:<br />
. . . . . . . . . . . . . . . . . . 52% - Age 17 or Under],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b><b><sub><span style="color: #984806; font-family: "Trebuchet MS";">υ</span></sub></b> Polymorphisms (15)],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #984806; font-family: "Trebuchet MS";">VxX</span></b> indicators </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . <b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b>
158E mix, 159D mix], </div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b> 166Q], </div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b> 189D, 189T_xL, <a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html" target="_blank">190G</a>], </div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #984806; font-family: "Trebuchet MS";">RBS</span></b> 225G (2), 226R, 233H],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location early <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
<b><span style="color: #4f6228; font-family: "Trebuchet MS";">HA</span></b> 237I],</div>
<div class="c">
. . . . . . . . . . . . . [Co-location <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
Isolated from Blood (Serum)], </div>
<div class="c">
. . . . . . . . . . . . . [Studied with <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b>
Severe and Fatal cases], </div>
<div class="c">
. . . . . . . . . . . . . [<b>Wisconsin28_55M_2011_12_01</b></div>
<div class="c">
. . . . . . . . . . . . . . . . swine-like human H1N1 <b><span style="color: #632423; font-family: Trebuchet;">variant</span></b> case </div>
<div class="c">
. . . . . . . . . . . . . . . . . . with <b><span style="color: #632423; font-family: "Trebuchet MS";">pH1N1</span></b><b><span style="color: #4f6228; font-family: "Trebuchet MS";"> PA</span></b> & <b><span style="color: #4f6228; font-family: "Trebuchet MS";">M</span></b> gene segments],<br />
. . . . . . . . . . . . . [H5N1 2<sup>nd</sup> Base Donor <b><span style="color: blue;">142Q (CAG)</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . . [H13
LookAside<sub>u</sub>],</div>
<div class="c">
. . . . . . . . . . . . . [zH3N2 LookAside<sub>d2</sub>],</div>
<div class="c">
. . . . . . . . . . . . . [zH6N1 LookAside<sub>d2</sub>],</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b> [avH1N1<br />
. . . . . . . . . . . . . . . with HA #1T, syn34N (AAt), syn77S (AGt),<br />
. . . . . . . . . . . . . . . . . . . syn102E (GAa), syn156K (AAg),<br />
. . . . . . . . . . . . . . . . . . . 188T, syn258F (TTt), syn285P (CCt), syn306C (TGc),<br />
. . . . . . . . . . . . . . . . . . . 324I, syn333F (TTc), syn372Q (CAa), syn396V (GTg),<br />
. . . . . . . . . . . . . . . . . . . syn465N (AAt)],<br />
. . . . . . . . . . . . .[Virginia13_M1C1_46F_2012_08_21<br />
. . . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">142D</span></b>, 188T, syn223V (GTa),<br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . syn338G (GGc), 377K, 454N],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . syn285P (CCt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn306C (TGc),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [Wilson-Smith],</div>
<div class="c">
. . . . . . . . . . . . [1918],</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>]</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484746"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloAltoAlegre1314856_43M_2013_09_21_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/13-14856</div>
<div class="c">
. . . . . . . . Treatment by <b><span style="color: #783f04;">Oseltamivir</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484746" target="_blank">EPI484746</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149730" target="_blank">EPI_ISL_149730</a></div>
<div class="c">
. . . . . . . . 28 Polymorphisms (10 Amino and 18 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#9V</span></b>,</div>
<div class="c">
. . . . . . . . syn42G (GGt),</div>
<div class="c">
. . . . . . . . syn58C (TGc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn125S (TCg),</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . syn165S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn294P (CCc),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">326F</span></b> [pH1N1 <b><span style="color: maroon;">Rare</span></b>: Count 12,</div>
<div class="c">
. . . . . . . . . . . . . . Re-Emergent,</div>
<div class="c">
. . . . . . . . . . . . . . Last Noted 2011],</div>
</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn383N (AAc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn426A (GCt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484750"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilMatoGrossoCuiaba73766_36M_2013_09_11_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Mato Grosso/73766/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484750" target="_blank">EPI484750</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149734" target="_blank">EPI_ISL_149734</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (8 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn31H (CAt)</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . Fatalities: </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . US Child
(2M), </div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . <st1:country-region>Mexico</st1:country-region>
(29M),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . <st1:country-region>Ecuador</st1:country-region>
(35F),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . Hospitalised:</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . . . . <st1:country-region>Ecuador</st1:country-region>
(34M, 51M),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . TamiFlu Resistance:
US],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1 <st1:country-region>China</st1:country-region>
Fatality 2005 (35M)],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [H5N1 <st1:country-region>Egypt</st1:country-region>
Child 2009 (13M)],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [WSN, WSZ with <b><span style="color: #003300;">HA</span> <span style="color: blue;">159D</span></b>],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn184H (CAc)</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">syn265G (GGg)</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn458N (AAt),</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 Passerine, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484744"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloGuariba628500_<b><span style="color: #993300;">6mM</span></b>_2013_08_05_<b><span style="color: red;">VxX</span></b>_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/6-28500/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccinated 2013</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484744" target="_blank">EPI484744</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149728" target="_blank">EPI_ISL_149728</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155I</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . . [avH1N1],</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn382V (GTg),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484740"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloBauru216961_29M_2013_07_10_<b><span style="color: red;">VxX</span></b>_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/2-16961/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccinated 2013</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484740" target="_blank">EPI484740</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149725" target="_blank">EPI_ISL_149725</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc) [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">326F</span></b> [pH1N1 <b><span style="color: maroon;">Rare</span></b>: Count 12,</div>
<div class="c">
. . . . . . . . . . . . . . Re-Emergent,</div>
<div class="c">
. . . . . . . . . . . . . . Last Noted 2011],</div>
</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn458N (AAt),</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484739"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloSorocaba1117706_<b><span style="color: #993300;">1F</span></b>_2013_07_01_<b><span style="color: red;">VxX</span></b>_<b><span style="color: red;">s</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/11-17706/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccinated 2013</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484739" target="_blank">EPI484739</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149724" target="_blank">EPI_ISL_149724</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (13 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">46R</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>24</b> Cases over <b>29</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_46R_AgA_2013_11_02_Map.html" target="_blank">map</a>), </div>
<div class="c">
. . . . . . . . . . . . . . 100% CrossClade: 2013 Cases,</div>
<div class="c">
. . . . . . . . . . . . . . . . . Delaware 2013-08-02,</div>
<div class="c">
. . . . . . . . . . . . . . Fatality 2009,</div>
<div class="c">
. . . . . . . . . . . . . . Hospitalisation 2009,</div>
<div class="c">
. . . . . . . . . . . . . . Vaccine Escape: Count 03,</div>
<div class="c">
. . . . . . . . . . . . . . TamiFlu Resistance,</div>
<div class="c">
. . . . . . . . . . . . . . Age / Gender Dynamic:</div>
<div class="c">
. . . . . . . . . . . . . . . . . 89% = Child or <b><span style="color: #993300;">ChildBearing
Age</span></b> Female</div>
<div class="c">
. . . . . . . . . . . . . . . . . 61% = Child Age 14 or Under</div>
<div class="c">
. . . . . . . . . . . . . . . . . 44% = Child Age 04 or Under],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">190G</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>17</b> Cases over <b>19</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html" target="_blank">map</a>),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Fatalities</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escapes</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: #783f04;">Infants</span></b>],</div>
<div class="c">
. . . . . . . . syn195Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P, 208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn464G (GGg),</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">530A</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2])</div>
<br />
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<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> Segments elucidated at 2013-11-01-14_54_50_257919 by GeneWurx see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
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<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-12551401823233492102013-11-06T22:49:00.000-06:002013-11-25T15:56:34.845-06:00HA 263S: Emergent H7N9 & pH1N1 Receptor Binding Dynamic<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_blp_HA_263S_AgT_2013_11_04_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-11-06<br />
Last Update : 2013-11-25</span><br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Gain of Function Empiriks</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;">by</span></div>
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Polymorphism</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;"><b><span style="color: #783f04;">pH1N1</span></b> <b><span style="color: #274e13;">HA</span> <span style="color: blue;">263S</span></b></span></div>
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/blp_HA_263S_AgT_2013_11_04_Map.html" target="_blank"><img alt="Emergent H7N9 & pH1N1 Receptor Binding Dynamic: HA 263S" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/blp_HA_263S_AgT_2013_11_04_Map.html" target="_blank">Map - Active and Detailed</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
8 Cases over 10 Sequences<br />
<hr style="width: 35%;" />
</div>
<br/>
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Receptor Binding Site Variance</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 85%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="100% pH1N1 RBS Revision 2013">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4"><span style="color: #4c1130;">pH1N1</span><br />
<span style="color: #ffd966;">100%</span> <span style="color: #274e13;">Receptor Binding Site</span> Revision for <span style="color: #ffd966;">2013</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Date</th><th style="text-align: center;">Name</th><th style="text-align: center;">RBS<br />
Revision</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> 2013-10-05 </td><td> BrazilSaoPauloRibeiraoPreto630359_44M_<b><span style="color: red;">VxX</span></b>_s</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225G</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-263s-emergent-h7n9-ph1n1-receptor.html#EPI484749" style="font-size: 80%;" target="_blank">EPI484749</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013-02-20 </td><td> Ukraine5794_C2M1_18F</td><td> <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">227G</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-263s-emergent-h7n9-ph1n1-receptor.html#EPI462073" style="font-size: 80%;" target="_blank">EPI462073</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br/>
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="2">Cross SeroType Analytics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 50%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="HA Set Polymorphic Homology">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3"><span style="color: #274e13;">HA</span> Set Polymorphic Homology</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">SeroType</th><th style="text-align: center;">Count</th><th style="text-align: center;">Percent</th></tr>
<tr style="font-size: 90%; text-align: center;"><td> H5N1</td><td style="text-align: center;">30</td><td style="text-align: center;">49%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> H7N7</td><td style="text-align: center;">19</td><td style="text-align: center;">31%</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 50%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Origin-Seeking HA 263S">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td>Origin-Seeking <span style="color: #274e13;">HA</span> <span style="color: blue;">263S</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">SeroType</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">Emergent H7N9</span></b> Amino wild type</td></tr>
<tr style="font-size: 90%;"><td> H7N7 <b><span style="color: #660000;">Human Fatality</span></b> Amino</td></tr>
<tr style="font-size: 90%;"><td> H7N7 Amino wild type</td></tr>
<tr style="font-size: 90%;"><td> avH1N1 Amino wild type</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br/>
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Isolate Metrics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 25%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 50%;" title="Calendar">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Calendar</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Year</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2013</td><td>02</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2012</td><td>00</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2011</td><td>01</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2010</td><td>01</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2009</td><td>06</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 44%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Age Dynamic">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Age Dynamic</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Observation</th><th style="text-align: center;">Per<br />
Cent</th></tr>
<tr style="font-size: 90%;"><td> Child Aged 18 or Under</td><td style="text-align: center;">60%</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 35%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">CladeName</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> UnCladed</td><td style="text-align: center;">07</td></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">03</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI484749"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloRibeiraoPreto630359_44M_2013_10_05_<b><span style="color: red;">VxX</span></b>_s (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/6-30359/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . Treatment by <b><span style="color: #783f04;">Oseltamivir</span></b><br />
. . . . . . . . <a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html" target="_blank" title="Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape">Deposit Report</a><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484749" target="_blank">EPI484749</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149733" target="_blank">EPI_ISL_149733</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (10 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . syn156K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>,</div>
<div class="c">
. . . . . . . . syn236L (tTA),</div>
<div class="c">
. . . . . . . . syn237V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">259T</span></b> [pH1N1 <b><span style="color: maroon;">Upsilon </span></b>US Military],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">263S</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: Count 09 on 07 Cases,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . Ukraine5794_C2M1_<b><span style="color: #993300;">18F</span></b>_2013_02_20
</div>
<div class="c">
. . . . . . . . . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">227G</span></b> and <b><span style="color: #003300;">NA</span><span style="color: blue;"> 222D,<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . . . . . . . US Air Force 2009],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #993300;">Emergent H7N9</span></b> Amino wt], </div>
<div class="c">
. . . . . . . . . . . . [H7N7 Human Fatality Amino wt],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . syn513I (ATc),</div>
<div class="c">
. . . . . . . . syn537S (AGc) [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . . . . . . . [1918])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI462073"></a><o:p></o:p></div>
<div class="c">
. . . . Ukraine5794_C2M1_<b><span style="color: #993300;">18F</span></b>_2013_02_20 (</div>
<div class="c">
. . . . . . . . A/Ukraine/5794/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Receptor Binding Variance</span><span style="color: red;"> </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">227G</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/462073" target="_blank">EPI462073</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144074" target="_blank">EPI_ISL_144074</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (11 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . #6M,</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . 87G,</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . syn127P (CCa),</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">166I</span></b>,</div>
<div class="c">
. . . . . . . . syn171D (GAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn189A (GCa),</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . syn224R (AGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">227G</span></b> [<st1:country-region>France</st1:country-region><a href="http://pf11.blogspot.com/2011/12/avian-homology-on-high-diversity.html#EPI346699" target="_blank">Lorraine1176</a>_50x_2011_02_23_<b><span style="color: red;">TmX</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn258F (TTt),</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . syn275V (GTt),</div>
<div class="c">
. . . . . . . . syn337A (GCt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . syn488D (GAt),</div>
<div class="c">
. . . . . . . . 523A,</div>
<div class="c">
. . . . . . . . syn524A (GCt),</div>
<div class="c">
. . . . . . . . syn538F (TTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI416353"></a><o:p></o:p></div>
<div class="c">
. . . . JapanSuita99_2011_01 (</div>
<div class="c">
. . . . . . . . A/Suita/99/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/416353" target="_blank">EPI416353</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/134103" target="_blank">EPI_ISL_134103</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (7 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa2,</div>
<div class="c">
. . . . . . . . syn10Y (TAc),</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">71D</span></b>,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn360Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn445V (GTt),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn465N (AAt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa535)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385245"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP1112_C2_<b><span style="color: #993300;">9M</span></b>_2010_04_06 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP1112/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/385245" target="_blank">EPI385245</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124666" target="_blank">EPI_ISL_124666</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn#9L (tTA),</div>
<div class="c">
. . . . . . . . syn53L (cTG),</div>
<div class="c">
. . . . . . . . syn107Q (CAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">145R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 263S)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI336251"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandLondon863_C1_E275_2009_11_24 (</div>
<div class="c">
. . . . . . . . A/England/863/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/336251" target="_blank">EPI336251</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/96275" target="_blank">EPI_ISL_96275</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn#2F (TTc),</div>
<div class="c">
. . . . . . . . 35I,</div>
<div class="c">
. . . . . . . . syn53L (cTG),</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . syn490P (CCc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI276501"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandLondon863_C1_2009_11_24 (</div>
<div class="c">
. . . . . . . . A/ENG/863/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/276501" target="_blank">EPI276501</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/78380" target="_blank">EPI_ISL_78380</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn#2F (TTc),</div>
<div class="c">
. . . . . . . . 35I,</div>
<div class="c">
. . . . . . . . syn53L (cTG),</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . syn490P (CCc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI304878"></a><o:p></o:p></div>
<div class="c">
. . . . SpainLaRiojaRR6490_<b><span style="color: #993300;">15F</span></b>_2009_11_03 (</div>
<div class="c">
. . . . . . . . A/LaRioja/RR6490/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/304878" target="_blank">EPI304878</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/86857" target="_blank">EPI_ISL_86857</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (2 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa20,</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">291I</span></b> [Emergent H7N9 LookAside<sub>u</sub>]</div>
<div class="c">
. . . . . . . . HA Truncated after aa335)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI278242"></a><o:p></o:p></div>
<div class="c">
. . . . Maryland<b><span style="color: #783f04;">AF</span></b>2452_PMK1_38M_2009_10_27 (</div>
<div class="c">
. . . . . . . . A/Maryland/AF2452/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/278242" target="_blank">EPI278242</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/79000" target="_blank">EPI_ISL_79000</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn137A (GCt),</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . syn270I (ATc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . HA Truncated after aa386)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI336379"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandLambeth1081_C1_E403_2009_10_16 (</div>
<div class="c">
. . . . . . . . A/England/1081/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/336379" target="_blank">EPI336379</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/96403" target="_blank">EPI_ISL_96403</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . 24K [zH3N2],</div>
<div class="c">
. . . . . . . . 35I,</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . syn490P (CCc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI276392"></a><o:p></o:p></div>
<div class="c">
. . . . UKEnglandLambeth1081_C1_2009_10_16 (</div>
<div class="c">
. . . . . . . . A/ENG/1081/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/276392" target="_blank">EPI276392</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/78271" target="_blank">EPI_ISL_78271</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . 24K [zH3N2],</div>
<div class="c">
. . . . . . . . 35I,</div>
<div class="c">
. . . . . . . . 263S,</div>
<div class="c">
. . . . . . . . syn490P (CCc))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI462074"></a><o:p></o:p></div>
<div class="c">
. . . . Ukraine5794_C2M1_<b><span style="color: #993300;">18F</span></b>_2013_02_20 (</div>
<div class="c">
. . . . . . . . A/Ukraine/5794/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/462074" target="_blank">EPI462074</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/144074" target="_blank">EPI_ISL_144074</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (9 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 40V,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 76V,</div>
<div class="c">
. . . . . . . . syn77G (GGg),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">222D</span></b> [Youth Age Dynamic],</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">416N</span></b>,</div>
<div class="c">
. . . . . . . . syn426L (tTA),</div>
<div class="c">
. . . . . . . . syn439S (AGt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI385247"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeGP1112_C2_<b><span style="color: #993300;">9M</span></b>_2010_04_06 (</div>
<div class="c">
. . . . . . . . A/Singapore/GP1112/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/385247" target="_blank">EPI385247</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/124666" target="_blank">EPI_ISL_124666</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (1 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn114V (GTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">257K</span></b>,</div>
<div class="c">
. . . . . . . . syn323G (GGg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI305244"></a><o:p></o:p></div>
<div class="c">
. . . . SpainLaRiojaRR6490_<b><span style="color: #993300;">15F</span></b>_2009_11_03 (</div>
<div class="c">
. . . . . . . . A/LaRioja/RR6490/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/305244" target="_blank">EPI305244</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/86857" target="_blank">EPI_ISL_86857</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (1 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . NA Truncated before aa198,</div>
<div class="c">
. . . . . . . . syn369N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">393V</span></b>,</div>
<div class="c">
. . . . . . . . NA Truncated after aa418)</div>
<br />
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<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2013-11-04-16_34_55_129670 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2013. </em></span>
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<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-53962408126304909842013-11-06T21:51:00.000-06:002013-11-28T13:37:13.573-06:00HA 190G: pH1N1 Vaccine Escape & Child Fatality<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_blp_HA_190G_GgC_2013_10_31_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-11-06<br />
Last Update : 2013-11-28</span><br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Gain of Function Empiriks</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;">by</span></div>
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Polymorphism</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;"><b><span style="color: #783f04;">pH1N1</span></b> <b><span style="color: #274e13;">HA</span> <span style="color: blue;">190G</span></b></span></div>
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html" target="_blank"><img alt="HA 190G: pH1N1 Vaccine Escape & Child Fatality" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html" target="_blank">Map - Active and Detailed</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
18 Cases over 20 Sequences<br />
<hr style="width: 35%;" />
</div>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Key Severity Indicators</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 50%;">
<table align="center" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 40%;" title="Ambiguity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3">Ambiguity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Segment</th><th style="text-align: center;">Type</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">Hemagglutinin</span></b></td><td> Binary</td><td style="text-align: center;">04</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">Neuraminidase</span></b></td><td> Binary</td><td style="text-align: center;">03</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #274e13;">Neuraminidase</span></b></td><td> Ultra</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<ul>
<li><b><span style="color: #783f04;">CrossClade</span></b> Emergent
<ul>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI484739" style="font-size: 80%;" target="_blank">EPI484739</a>] 2013-07-01 Brazil
</li>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI466097" style="font-size: 80%;" target="_blank">EPI466097</a>] 2013-05-24 Australia
</li>
</ul>
</li>
<li><b><span style="color: #660000;">Fatality</span></b> Count 02
<ul>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI335466" style="font-size: 80%;" target="_blank">EPI335466</a>] Child (6M) Brazil 2010
</li>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI403847" style="font-size: 80%;" target="_blank">EPI403847</a>] UK 2010
</li>
</ul>
</li>
<li><b><span style="color: #660000;">Vaccine Escape</span></b> Count 04 (05)
<ul>
<li>2013
<ul>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI439239" style="font-size: 80%;" target="_blank">EPI439239</a>] Child (4M) New Mexico
</li>
</ul>
</li>
<li>2012
<ul>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI426455" style="font-size: 80%;" target="_blank">EPI426455</a>] Child (1M) Minnesota
</li>
</ul>
</li>
<li>2011
<ul>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI349352" style="font-size: 80%;" target="_blank">EPI349352</a>] Paraguay (25F)
</li>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI346687" style="font-size: 80%;" target="_blank">EPI346687</a>] Cameroon
</li>
</ul>
</li>
<li><b>Probable</b> Vaccination 2012
<ul>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI377070" style="font-size: 80%;" target="_blank">EPI377070</a>] US Air Force (24F)
</li>
</ul>
</li>
</ul>
</li>
<li><b><span style="color: #274e13;">NA</span></b> <b><span style="color: #783f04;">UltraAmbiguity</span></b>
<ul>
<li>[<a href="http://pf11.blogspot.com/2013/11/ha-190g-ph1n1-vaccine-escape-child.html#EPI213437" style="font-size: 80%;" target="_blank">EPI213437</a>] Singapore 2009</li>
<li><b><span style="color: #274e13;">NA</span></b> 296R aGG mix wt
</li>
<li><b><span style="color: #274e13;">NA</span></b> 296R cGG mix wt
</li>
<li><b><span style="color: #274e13;">NA</span></b> 296G mix wt
</li>
</ul>
</li>
</ul>
<!-- 2013-11-15 -->
<br />
<table align="center" border="0px" cellpadding="5px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 5px; padding-right: 5px; padding-top: 2px; width: 100%;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Isolate Metrics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 25%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="Calendar">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Calendar</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Year</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2013</td><td>04</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2012</td><td>03</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2011</td><td>02</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2010</td><td><b>08</b></td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2009</td><td>03</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 44%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Age / Gender Dynamic">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Age / Gender Dynamic</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Observation</th><th style="text-align: center;">Percent</th></tr>
<tr style="font-size: 90%;"><td> Child or <br />
<b><span style="color: #783f04;"> ChildBearing Age</span></b> female</td><td style="text-align: center;"><b>93%</b></td></tr>
<tr style="font-size: 90%;"><td> Child Aged 17 or Under</td><td style="text-align: center;"><b>73%</b></td></tr>
<tr style="font-size: 90%;"><td> Child Aged 06 or Under</td><td style="text-align: center;">53%</td></tr>
<tr style="font-size: 90%;"><td> Child Aged 04 or Under</td><td style="text-align: center;">27%</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 35%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 80%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">CladeName</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> UnCladed</td><td style="text-align: center;">09</td></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">08</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;">02</td></tr>
<tr style="font-size: 90%;"><td> Clade4:128D</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<div style="text-align: center;">
<!-- 2013-11-15 end -->
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI484739"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloSorocaba1117706_<b><span style="color: #993300;">1F</span></b>_2013_07_01_<b><span style="color: red;">VxX</span></b>_s (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/11-17706/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccinated 2013<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . <a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html" target="_blank" title="Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape">Deposit Report</a><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484739" target="_blank">EPI484739</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149724" target="_blank">EPI_ISL_149724</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (13 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">46R</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>24</b> Cases over <b>29</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_46R_AgA_2013_11_02_Map.html" target="_blank">map</a>), </div>
<div class="c">
. . . . . . . . . . . . . . 100% CrossClade: 2013 Cases,</div>
<div class="c">
. . . . . . . . . . . . . . . . . Delaware 2013-08-02,</div>
<div class="c">
. . . . . . . . . . . . . . TamiFlu Resistance,</div>
<div class="c">
. . . . . . . . . . . . . . Vaccine Escape Count 03,</div>
<div class="c">
. . . . . . . . . . . . . . Fatality 2009,</div>
<div class="c">
. . . . . . . . . . . . . . Hospitalisation 2009,</div>
<div class="c">
. . . . . . . . . . . . . . Age / Gender Dynamic:</div>
<div class="c">
. . . . . . . . . . . . . . . . . 89% = Child or <b><span style="color: #993300;">ChildBearing
Age</span></b> Female</div>
<div class="c">
. . . . . . . . . . . . . . . . . 61% = Child Age 14 or Under</div>
<div class="c">
. . . . . . . . . . . . . . . . . 44% = Child Age 04 or Under],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [Emergent H7N9],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">190G</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>17</b> Cases over <b>19</b> Sequences</div>
<div class="c">
. . . . . . . . . . . . . . . . . . Fatalities,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . Vaccine Escapes,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . Infants],</div>
<div class="c">
. . . . . . . . syn195Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn464G (GGg),</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">530A</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI466097"></a><o:p></o:p></div>
<div class="c">
. . . . SouthAustralia19_M1_xF_2013_05_24 (</div>
<div class="c">
. . . . . . . . A/SOUTH <st1:country-region>AUSTRALIA</st1:country-region>/19/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/466097" target="_blank">EPI466097</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145316" target="_blank">EPI_ISL_145316</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (10 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [Emergent H7N9],<o:p></o:p></div>
<div class="c">
. . . . . . . . syn161Y (TAt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn323N (AAc),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn459N (AAc),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn507K (AAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI443685"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico02_<b><span style="color: #993300;">4M</span></b>_2013_01_06 (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/02/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/443685" target="_blank">EPI443685</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/139490" target="_blank">EPI_ISL_139490</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn161Y (TAt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">280A</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">452I</span></b>,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439239"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico02_M1C2_<b><span style="color: #993300;">4M</span></b>_2013_01_06_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/439239" target="_blank">EPI439239</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138664" target="_blank">EPI_ISL_138664</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (11 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E</span></b>,</div>
<div class="c">
. . . . . . . . syn161Y (TAt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">280A</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">452I</span></b> [H13N2],</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426455"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota34_M1C1_<b><span style="color: #993300;">1M</span></b>_2012_12_20_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Minnesota/34/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/426455" target="_blank">EPI426455</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136468" target="_blank">EPI_ISL_136468</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (10 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">124I</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E</span></b>,</div>
<div class="c">
. . . . . . . . syn161Y (TAt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI409917"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota26_C1_31F_2012_12_13 (</div>
<div class="c">
. . . . . . . . A/Minnesota/26/2012</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/409917" target="_blank">EPI409917</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/133162" target="_blank">EPI_ISL_133162</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn161Y (TAt),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn472H (CAt),</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI377070"></a><o:p></o:p></div>
<div class="c">
. . . . Washington2961_PMK1_24F_2012_03_25 (</div>
<div class="c">
. . . . . . . . A/Washington/2961/2012</div>
<div class="c">
. . . . . . . . <st1:country-region>United States</st1:country-region>
Air Force: Probable Vaccination</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/377070" target="_blank">EPI377070</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/121766" target="_blank">EPI_ISL_121766</a></div>
<div class="c">
. . . . . . . . 16 Polymorphisms (10 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn10Y (TAc),</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">57R</span></b> [H7N7 <b><span style="color: #993300;">Passerine</span></b>],</div>
<div class="c">
. . . . . . . . . . [zH3N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">72T</span></b>,</div>
<div class="c">
. . . . . . . . syn84E (GAg),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">149E</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219M</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . 263D,</div>
<div class="c">
. . . . . . . . syn296Q (CAa),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . HA Truncated after aa386)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI349352"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay191_X1C1_25F_2011_11_17_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Paraguay/191/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">159D</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/349352" target="_blank">EPI349352</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/101589" target="_blank">EPI_ISL_101589</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (11 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">3T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">73P</span></b>,</div>
<div class="c">
. . . . . . . . syn88S (TCt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn158G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">159D</span></b> [Emergent H7N9 wt],</div>
<div class="c">
. . . . . . . . syn167S (TCa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">218E</span></b> [H7N7 Avian and Sea Mammal],</div>
<div class="c">
. . . . . . . . syn255R (AGg),</div>
<div class="c">
. . . . . . . . syn339F (TTt),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">406G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">513T</span></b> [H5N1])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI346687"></a><o:p></o:p></div>
<div class="c">
. . . . CameroonLEID03111573_M2M2_xM_2011_03_01_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Cameroon/LEID/03/11/1573/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b> mix wt</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/346687" target="_blank">EPI346687</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/99919" target="_blank">EPI_ISL_99919</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (9 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . 1T,</div>
<div class="c">
. . . . . . . . syn157K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn173G (GGa),</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">205E mix wt</span></b> [H7N7 Rare],</div>
<div class="c">
. . . . . . . . syn238E (GAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275A</span></b> [Emergent H7N9 wt],</div>
<div class="c">
. . . . . . . . syn286K (AAa),</div>
<div class="c">
. . . . . . . . syn334G (GGa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 476D,</div>
<div class="c">
. . . . . . . . 477K,</div>
<div class="c">
. . . . . . . . 523A)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI403847"></a><o:p></o:p></div>
<div class="c">
. . . . UKEngland04640543_2010_11_14_<b><span style="color: red;">f</span></b> (</div>
<div class="c">
. . . . . . . . A/England/04640543/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/403847" target="_blank">EPI403847</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131605" target="_blank">EPI_ISL_131605</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI295754"></a><o:p></o:p></div>
<div class="c">
. . . . UKEngland4640543_2010_11_14_<b><span style="color: red;">f</span></b> (</div>
<div class="c">
. . . . . . . . A/England/4640543/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/295754" target="_blank">EPI295754</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/84274" target="_blank">EPI_ISL_84274</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI294354"></a><o:p></o:p></div>
<div class="c">
. . . . AustraliaDarwin156_<b><span style="color: #993300;">6M</span></b>_2010_10_26 (</div>
<div class="c">
. . . . . . . . A/DARWIN/156/2010</div>
<div class="c">
. . . . . . . . Clade4: HA 128D</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/294354" target="_blank">EPI294354</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/83873" target="_blank">EPI_ISL_83873</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (3 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . syn60I (ATc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">128D</span></b>,</div>
<div class="c">
. . . . . . . . syn132N (AAt),</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . syn306C (TGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn469E (GAg),</div>
<div class="c">
. . . . . . . . syn501E (GAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI335466"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPaulo29269_<b><span style="color: #993300;">6M</span></b>_2010_05_03_<b><span style="color: red;">f</span></b> (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/29269/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/335466" target="_blank">EPI335466</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/95941" target="_blank">EPI_ISL_95941</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn132N (AAt),</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">274Q</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn547Q (CAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI258224"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaShanghaiPudongxinSWL1335_C3_<b><span style="color: #993300;">17M</span></b>_2010_03_18 (</div>
<div class="c">
. . . . . . . . A/Shanghai-Pudongxin/SWL1335/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/258224" target="_blank">EPI258224</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/75083" target="_blank">EPI_ISL_75083</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (6 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . 131P,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">141N</span></b>,</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">205E mix wt</span></b> [H7N7 Rare],</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn408E (GAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">409S</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI249903"></a><o:p></o:p></div>
<div class="c">
. . . . JapanNagasakiHA109_M_<b><span style="color: #993300;">0F</span></b>_2010_01_18 (</div>
<div class="c">
. . . . . . . . A/Nagasaki/HA-10-9/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/249903" target="_blank">EPI249903</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71907" target="_blank">EPI_ISL_71907</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . syn16T (ACt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">174R</span></b> [<st1:country-region>Greece</st1:country-region><a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476406">Kavala470</a>_46M_2011_02_01_f],</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 200T)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI249900"></a><o:p></o:p></div>
<div class="c">
. . . . JapanNagasakiHA106_M_<b><span style="color: #993300;">2M</span></b>_2010_01_12 (</div>
<div class="c">
. . . . . . . . A/Nagasaki/HA-10-6/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/249900" target="_blank">EPI249900</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71904" target="_blank">EPI_ISL_71904</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (3 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn134G (GGc),</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn292S (AGt),</div>
<div class="c">
. . . . . . . . syn413K (AAg),</div>
<div class="c">
. . . . . . . . syn482V (GTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">550K</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI249899"></a><o:p></o:p></div>
<div class="c">
. . . . JapanNagasakiHA105_M_<b><span style="color: #993300;">13F</span></b>_2010_01_12 (</div>
<div class="c">
. . . . . . . . A/Nagasaki/HA-10-5/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/249899" target="_blank">EPI249899</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71903" target="_blank">EPI_ISL_71903</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (4 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn94Y (TAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">142D</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: Count 50 on 46 Cases (<a href="http://genewurx.com/data/map/blp_HA_142D_GaT_2013_11_02_Map.html" target="_blank">map</a>),</div>
<div class="c">
. . . . . . . . . . . . BrazilSaoPauloJaboticabal630177_<b><span style="color: #993300;">1M</span></b>_2013_09_30_s,<br />
. . . . . . . . . . . . <a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html" target="_blank" title="Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape">Deposit Report</a>],</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . syn193S (AGc),</div>
<div class="c">
. . . . . . . . 298V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">307S</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn471Y (TAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI272697"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaQingdao1215_<b><span style="color: #993300;">15M</span></b>_2009_09_12 (</div>
<div class="c">
. . . . . . . . A/Qingdao/1215/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/272697" target="_blank">EPI272697</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/77396" target="_blank">EPI_ISL_77396</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn#6L (CTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">13D</span></b> [pH1N1 Rare: Count 04],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">25R</span></b> [Emergent H7N9 wt],</div>
<div class="c">
. . . . . . . . . . [H7N7],</div>
<div class="c">
. . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn27V (GTg),</div>
<div class="c">
. . . . . . . . syn44L (tTA),</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">293P</span></b>,</div>
<div class="c">
. . . . . . . . syn318A (GCt),</div>
<div class="c">
. . . . . . . . syn325P (CCt),</div>
<div class="c">
. . . . . . . . syn378I (ATc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI213435"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeON1138_P1_2009_07_13 (</div>
<div class="c">
. . . . . . . . A/Singapore/ON1138/2009</div>
<div class="c">
. . . . . . . . UltraAmbiguity <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/213435" target="_blank">EPI213435</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/61427" target="_blank">EPI_ISL_61427</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (1 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . syn181G (GGt),</div>
<div class="c">
. . . . . . . . 190G)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI221156"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania08_C1_31M_2009_05_02 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/08/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/221156" target="_blank">EPI221156</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/31576" target="_blank">EPI_ISL_31576</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . .<b><span style="color: blue;"> #6M</span></b> [<b><span style="color: #660000;">H9N2 Human</span></b>],<br />
. . . . . . . . . . . [H9N2 Pheasant, Pigeon, Quail],<br />
. . . . . . . . . . . [H9N2 Commercial Poultry],</div>
<div class="c">
. . . . . . . . 190G,</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn346G (GGa),</div>
<div class="c">
. . . . . . . . syn456L (cTA))</div>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI466096"></a><o:p></o:p></div>
<div class="c">
. . . . SouthAustralia19_M1_xF_2013_05_24 (</div>
<div class="c">
. . . . . . . . A/SOUTH <st1:country-region>AUSTRALIA</st1:country-region>/19/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/466096" target="_blank">EPI466096</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145316" target="_blank">EPI_ISL_145316</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn307N (AAt),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI442693"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico02_<b><span style="color: #993300;">4M</span></b>_2013_01_06 (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/02/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/442693" target="_blank">EPI442693</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/139490" target="_blank">EPI_ISL_139490</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn274Y (TAc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI439238"></a><o:p></o:p></div>
<div class="c">
. . . . NewMexico02_M1C2_<b><span style="color: #993300;">4M</span></b>_2013_01_06_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/New <st1:country-region>Mexico</st1:country-region>/02/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/439238" target="_blank">EPI439238</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138664" target="_blank">EPI_ISL_138664</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">224V</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn274Y (TAc),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI426454"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota34_M1C1_<b><span style="color: #993300;">1M</span></b>_2012_12_20_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Minnesota/34/2012</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/426454" target="_blank">EPI426454</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/136468" target="_blank">EPI_ISL_136468</a></div>
<div class="c">
. . . . . . . . 17 Polymorphisms (9 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">38T</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn55T (ACc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">56H</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">66H mix wt</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">67A</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI409916"></a><o:p></o:p></div>
<div class="c">
. . . . Minnesota26_C1_31F_2012_12_13 (</div>
<div class="c">
. . . . . . . . A/Minnesota/26/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/409916" target="_blank">EPI409916</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/133162" target="_blank">EPI_ISL_133162</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">317M mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI349351"></a><o:p></o:p></div>
<div class="c">
. . . . Paraguay191_X1C1_25F_2011_11_17_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Paraguay/191/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">159D</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/349351" target="_blank">EPI349351</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/101589" target="_blank">EPI_ISL_101589</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">62I</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn111K (AAa),</div>
<div class="c">
. . . . . . . . syn162P (CCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188F</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">272S</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn387F (TTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">396M mix wt</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . syn416D (GAc),</div>
<div class="c">
. . . . . . . . syn438T (ACc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI346688"></a><o:p></o:p></div>
<div class="c">
. . . . CameroonLEID03111573_M2M2_xM_2011_03_01_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Cameroon/LEID/03/11/1573/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b> mix wt</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/346688" target="_blank">EPI346688</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/99919" target="_blank">EPI_ISL_99919</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (0 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn6K (AAa),</div>
<div class="c">
. . . . . . . . syn22L (cTA),</div>
<div class="c">
. . . . . . . . syn262K (AAa),</div>
<div class="c">
. . . . . . . . syn398E (GAa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI403849"></a><o:p></o:p></div>
<div class="c">
. . . . UKEngland04640543_2010_11_14_<b><span style="color: red;">f</span></b> (</div>
<div class="c">
. . . . . . . . A/England/04640543/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/403849" target="_blank">EPI403849</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/131605" target="_blank">EPI_ISL_131605</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (2 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn162P (CCc),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn416D (GAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI294353"></a><o:p></o:p></div>
<div class="c">
. . . . AustraliaDarwin156_<b><span style="color: #993300;">6M</span></b>_2010_10_26 (</div>
<div class="c">
. . . . . . . . A/DARWIN/156/2010</div>
<div class="c">
. . . . . . . . Clade4: HA 128D</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/294353" target="_blank">EPI294353</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/83873" target="_blank">EPI_ISL_83873</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (2 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . syn4N (AAt),</div>
<div class="c">
. . . . . . . . syn5Q (CAg),</div>
<div class="c">
. . . . . . . . syn85L (cTA),</div>
<div class="c">
. . . . . . . . syn354G (GGa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">394I</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">397K</span></b>,</div>
<div class="c">
. . . . . . . . NA Truncated after aa465)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI258223"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaShanghaiPudongxinSWL1335_C3_<b><span style="color: #993300;">17M</span></b>_2010_03_18 (</div>
<div class="c">
. . . . . . . . A/Shanghai-Pudongxin/SWL1335/2010</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/258223" target="_blank">EPI258223</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/75083" target="_blank">EPI_ISL_75083</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (0 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . syn110S (TCa),</div>
<div class="c">
. . . . . . . . syn281C (TGc),</div>
<div class="c">
. . . . . . . . syn315G (GGg),</div>
<div class="c">
. . . . . . . . syn330D (GAc),</div>
<div class="c">
. . . . . . . . syn339S (TCa),</div>
<div class="c">
. . . . . . . . syn446C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI272698"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaQingdao1215_<b><span style="color: #993300;">15M</span></b>_2009_09_12 (</div>
<div class="c">
. . . . . . . . A/Qingdao/1215/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/272698" target="_blank">EPI272698</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/77396" target="_blank">EPI_ISL_77396</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">6T</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn22L (TTg) [H5N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">81I</span></b> [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">105N</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn444S (TCt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI213437"></a><o:p></o:p></div>
<div class="c">
. . . . SingaporeON1138_P1_2009_07_13 (</div>
<div class="c">
. . . . . . . . A/Singapore/ON1138/2009</div>
<div class="c">
. . . . . . . . UltraAmbiguity <b><span style="color: #003300;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/213437" target="_blank">EPI213437</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/61427" target="_blank">EPI_ISL_61427</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (3 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . NA Truncated before aa6,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">296R (aGG) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">296R (cGG) mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">296G (gGG) mix wt</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI184376"></a><o:p></o:p></div>
<div class="c">
. . . . Pennsylvania08_C1_31M_2009_05_02 (</div>
<div class="c">
. . . . . . . . A/Pennsylvania/08/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/184376" target="_blank">EPI184376</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/31576" target="_blank">EPI_ISL_31576</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (3 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">95G</span></b>,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . 248N)</div>
<br />
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<div style="text-align: center;">
<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2013-11-01-01_21_33_806820 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 <b><span style="color: #783f04;">GeneWurx</span></b>.com · All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-87932467262956820852013-11-06T20:11:00.001-06:002013-12-30T16:54:10.614-06:00HA 46R: pH1N1 Vaccine Escape & Child Dynamic<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_blp_HA_46R_AgA_2013_11_02_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-11-06<br />
Last Update : 2013-12-30</span><br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Gain of Function Empiriks</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;">by</span></div>
<div style="text-align: center;">
<span style="font-size: x-large;"><b>Polymorphism</b></span></div>
<div style="text-align: center;">
<span style="font-size: large;"><b><span style="color: #783f04;">pH1N1</span></b> <b><span style="color: #274e13;">HA</span> <span style="color: blue;">46R</span></b></span></div>
<table align="center" border="0px" cellpadding="1px" cellspacing="0px" style="padding-bottom: 2px; padding-left: 5px; padding-right: 5px; padding-top: 2px; width: 90%;">
<tbody>
<tr>
<td style="vertical-align: top; width: 50%;"><table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; padding-bottom: 2px; padding-left: 40px; padding-right: 40px; padding-top: 2px; text-align: center;"><tbody>
<tr><td style="text-align: center; width: 100%;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/blp_HA_46R_AgA_2013_11_02_Map.html" target="_blank"><img alt="pH1N1 Vaccine Escape & Child Dynamic: HA 46R" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center; width: 100%;"><a href="http://genewurx.com/data/map/blp_HA_46R_AgA_2013_11_02_Map.html" target="_blank">Map - Active and Detailed</a></td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 50%;"><table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; padding-bottom: 2px; padding-left: 40px; padding-right: 40px; padding-top: 2px; text-align: center;"><tbody>
<tr><td style="text-align: center; width: 100%;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/dendro/ctree_fsc_blp_HA_46R_AgA_2013_11_02.html" target="_blank"><img alt="HA 46R: Features by SubClade" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgvWrdWk9zcRiB8o_D6hp6PkomPIfMLjeCWvBmOH5kEpc5U4mKSA0uHnxNyovPwFtJ4vjS7AbAjOYYbrM2xHsF4I2h7M7_yOg62kdMOKF4TIjJGPf9oQ4GoXBYnNNj8Wgi_ZBs2t0Sdg7Q/s1600/dendro_tb.jpg" title="Dendrogram of Clinical and Genetic Features" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center; width: 100%;"><a href="http://genewurx.com/data/dendro/ctree_fsc_blp_HA_46R_AgA_2013_11_02.html" target="_blank">Clinical and Genetic Features</a></td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
24 Cases over 29 Sequences<br />
<hr style="width: 35%;" />
</div>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="1">Key Severity Indicators</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 50%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 60%;" title="Vaccine Escape Diversity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3">Vaccine Escape Diversity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Type</th><th style="text-align: center;">Observation</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> PhenoTypic</td><td> <b><span style="color: #660000;">Vaccinated</span></b> 2013</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> GenoTypic</td><td> <b><span style="color: #660000;">VxX</span></b> 158E</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> GenoTypic</td><td> <b><span style="color: #660000;">VxX</span></b> 225G</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td></tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 80%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Clinical Severity and Drug Resistance">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4">Clinical Severity and Drug Resistance</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Date</th><th style="text-align: center;">Name</th><th style="text-align: center;">Finding</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> 2009_08_21 </td><td> BrazilGoias69866_50F_<b><span style="color: red;">VxX_f</span></b></td><td> <b><span style="color: red;">Fatal</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI335496" style="font-size: 80%;" target="_blank">EPI335496</a> </td></tr>
<tr style="font-size: 90%;"><td> <b>2013</b>_07_01 </td><td> BrazilSaoPauloSorocaba1117706_<b><span style="color: #783f04;">1F</span></b>_<b><span style="color: red;">VxX</span></b>_s</td><td> InPatient</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI484739" style="font-size: 80%;" target="_blank">EPI484739</a> </td></tr>
<tr style="font-size: 90%;"><td> 2009_07_29 </td><td> AustriaLower245_St1_29F_s</td><td> InPatient</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI353337" style="font-size: 80%;" target="_blank">EPI353337</a> </td></tr>
<tr style="font-size: 90%;"><td> <b>2013</b>_06_18 </td><td> Haiti2030_C2C1_<b><span style="color: #783f04;">4x</span></b>_<b><span style="color: #7f6000;">TmX</span></b></td><td> <b><span style="color: #7f6000;">Drug</span></b><br />
<b><span style="color: #7f6000;"> Resistant</span></b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI465403" style="font-size: 80%;" target="_blank">EPI465403</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">CrossClade Analytics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 85%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="100% CrossClade in 2013">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4"><span style="color: #4c1130;">pH1N1</span><br />
<span style="color: #ffd966;">100%</span> CrossClade for <span style="color: #ffd966;">2013</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Date</th><th style="text-align: center;">Name</th><th style="text-align: center;">Clade<br />
Name</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> 2013_08_02 </td><td> Delaware09_C1_xF</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI466955" style="font-size: 80%;" target="_blank">EPI466955</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_07_01 </td><td> BrazilSaoPauloSorocaba1117706_<b><span style="color: #783f04;">1F</span></b>_<b><span style="color: red;">VxX</span></b>_s</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI484739" style="font-size: 80%;" target="_blank">EPI484739</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_06_18 </td><td> Haiti2030_C2C1_<b><span style="color: #783f04;">4x</span></b>_TmX</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI465403" style="font-size: 80%;" target="_blank">EPI465403</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_06_13 </td><td> Peru152_C1C1_<b><span style="color: #783f04;">2M</span></b></td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI467373" style="font-size: 80%;" target="_blank">EPI467373</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_06_12 </td><td> DominicanRep7603_C1_26F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
186P_188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI467203" style="font-size: 80%;" target="_blank">EPI467203</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_06_10 </td><td> DominicanRep7703_C1_56F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI467200" style="font-size: 80%;" target="_blank">EPI467200</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_06_02 </td><td> Haiti1792_C2C2_<b><span style="color: #783f04;">1F</span></b></td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
175K_188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI465708" style="font-size: 80%;" target="_blank">EPI465708</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_05_01 </td><td> DominicanRep7293_E3E1_19F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI477012" style="font-size: 80%;" target="_blank">EPI477012</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_05_01 </td><td> DominicanRep7293_C2M1_19F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI477010" style="font-size: 80%;" target="_blank">EPI477010</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_05_01 </td><td> DominicanRep7293_E4_19F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI468082" style="font-size: 80%;" target="_blank">EPI468082</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_05_01 </td><td> DominicanRep7293_C2_19F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI466874" style="font-size: 80%;" target="_blank">EPI466874</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_05_01 </td><td> DominicanRep7293_E2_19F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI457507" style="font-size: 80%;" target="_blank">EPI457507</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_05_01 </td><td> DominicanRep7293_C1_19F</td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI457503" style="font-size: 80%;" target="_blank">EPI457503</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_05_01 </td><td> DominicanRep7291_C1_25F_<b><span style="color: red;">VxX</span></b></td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
124N_188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI457456" style="font-size: 80%;" target="_blank">EPI457456</a> </td></tr>
<tr style="font-size: 90%;"><td> 2013_01_23 </td><td> Macau600062_M3_<b><span style="color: #783f04;">3F</span></b></td><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/11/ha-46r-ph1n1-vaccine-escape-child.html#EPI450490" style="font-size: 80%;" target="_blank">EPI450490</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="2">Cross SeroType Analytics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 50%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="HA Set Polymorphic Homology">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3"><span style="color: #274e13;">HA</span> Set Polymorphic Homology</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">SeroType</th><th style="text-align: center;">Count</th><th style="text-align: center;">Percent</th></tr>
<tr style="font-size: 90%; text-align: center;"><td> avH1N1<sub>farm</sub></td><td style="text-align: center;">51</td><td style="text-align: center;">47%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> H5N1</td><td style="text-align: center;">51</td><td style="text-align: center;">47%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> H6N1</td><td style="text-align: center;">41</td><td style="text-align: center;">38%</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> H7N7</td><td style="text-align: center;">38</td><td style="text-align: center;">35%</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 50%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 90%;" title="Origin-Seeking HA 46R">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td>Origin-Seeking <span style="color: #274e13;">HA</span> <span style="color: blue;">46R</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">SeroType</th></tr>
<tr style="font-size: 90%;"><td> avH1N1<sub>farm</sub></td></tr>
<tr style="font-size: 90%;"><td> H6N1</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<table align="center" border="0px" cellpadding="5px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 5px; padding-right: 5px; padding-top: 2px;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Isolate Metrics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 22%;"><table align="center" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 50%;" title="Calendar">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Calendar</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Year</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2013</td><td><b>10</b></td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2012</td><td>01</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2011</td><td>03</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2010</td><td>03</td></tr>
<tr style="font-size: 90%; text-align: center;"><td> 2009</td><td>07</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 46%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 100%;" title="Age / Gender Dynamic">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Age / Gender Dynamic</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Observation</th><th style="text-align: center;">Percent</th></tr>
<tr style="font-size: 90%;"><td> Child or<br />
<b><span style="color: #783f04;">ChildBearing Age</span></b> female</td><td style="text-align: center;"><b>89%</b></td></tr>
<tr style="font-size: 90%;"><td> Child Aged 14 or Under</td><td style="text-align: center;">61%</td></tr>
<tr style="font-size: 90%;"><td> Child Aged 04 or Under</td><td style="text-align: center;">44%</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 35%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 90%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">CladeName</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_208K</td><td style="text-align: center;">14</td></tr>
<tr style="font-size: 90%;"><td> UnCladed</td><td style="text-align: center;">10</td></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">03</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
124N_188T_208K</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
175K_188T_208K</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
186P_188T_208K</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> Clade5:208K_219V</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI466955"></a><o:p></o:p></div>
<div class="c">
. . . . Delaware09_C1_xF_2013_08_02 (</div>
<div class="c">
. . . . . . . . A/Delaware/09/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/466955" target="_blank">EPI466955</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145524" target="_blank">EPI_ISL_145524</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (13 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">46R</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">405E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">437I mix wt</span></b> [H7N7],<br />
. . . . . . . . . . . . . . . . . [Emergent H7N9 LookAside<sub>d</sub>]</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn471Y (TAt),</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI484739"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilSaoPauloSorocaba1117706_<b><span style="color: #993300;">1F</span></b>_2013_07_01_<b><span style="color: red;">VxX</span></b>_s (</div>
<div class="c">
. . . . . . . . A/Sao Paulo/11-17706/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccinated 2013<o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . <a href="http://pf11.blogspot.com/2013/11/brazil-2013-ph1n1-extreme-variant-and.html" target="_blank" title="Brazil 2013: pH1N1 Extreme Variant and Infant Vaccine Escape">Deposit Report</a><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/484739" target="_blank">EPI484739</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/149724" target="_blank">EPI_ISL_149724</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (13 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">46R</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>24</b> Cases over<b> 29</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_46R_AgA_2013_11_02_Map.html" target="_blank">map</a>), </div>
<div class="c">
. . . . . . . . . . . . . . 100% CrossClade: 2013 Cases,</div>
<div class="c">
. . . . . . . . . . . . . . . . . Delaware 2013-08-02,</div>
<div class="c">
<div class="c">
. . . . . . . . . . . . . . Fatality 2009,</div>
<div class="c">
. . . . . . . . . . . . . . Hospitalisation 2009,</div>
<div class="c">
. . . . . . . . . . . . . . Vaccine Escape: Count 03,</div>
<div class="c">
. . . . . . . . . . . . . . TamiFlu Resistance,</div>
</div>
<div class="c">
. . . . . . . . . . . . . . Age / Gender Dynamic:</div>
<div class="c">
. . . . . . . . . . . . . . . . . 89% = Child or <b><span style="color: #993300;">ChildBearing
Age</span></b> Female</div>
<div class="c">
. . . . . . . . . . . . . . . . . 61% = Child Age 14 or Under</div>
<div class="c">
. . . . . . . . . . . . . . . . . 44% = Child Age 04 or Under],</div>
<div class="c">
. . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
<div class="c">
. . . . . . . . <b><span style="color: blue;">190G</span></b> [pH1N1 <b><span style="color: #993300;">Rare</span></b>: <b>17</b> Cases over <b>19</b> Sequences (<a href="http://genewurx.com/data/map/blp_HA_190G_GgC_2013_10_31_Map.html" target="_blank">map</a>),</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Fatalities</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: red;">Vaccine Escapes</span></b>,</div>
<div class="c">
. . . . . . . . . . . . . . . . . . <b><span style="color: #783f04;">Infants</span></b>],</div>
</div>
<div class="c">
. . . . . . . . syn195Y (TAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn464G (GGg),</div>
<div class="c">
. . . . . . . . 502K [pH1N1 <b><span style="color: maroon;">Upsilon</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],</div>
<div class="c">
. . . . . . . . . . . . [H7N7 <b><span style="color: maroon;">Passerine</span></b>, Anser & Galliformes],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2],</div>
<div class="c">
. . . . . . . . . . . . [WSN, WSZ],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">530A</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . . . . . [H9N2])</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465403"></a><o:p></o:p></div>
<div class="c">
. . . . Haiti2030_C2C1_<b><span style="color: #993300;">4x</span></b>_2013_06_18_<b><span style="color: #993300;">TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Haiti/2030/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #7f6000;">TamiFlu Resistant</span></b> GenoType <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">275Y</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Rare Set</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">237I</span></b>
and <b><span style="color: #003300;">HA</span></b>
<b><span style="color: blue;">259T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465403" target="_blank">EPI465403</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145078" target="_blank">EPI_ISL_145078</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (12 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn485G (GGa),</div>
<div class="c">
. . . . . . . . syn498L (TTg),</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467373"></a><o:p></o:p></div>
<div class="c">
. . . . Peru152_C1C1_<b><span style="color: #993300;">2M</span></b>_2013_06_13 (</div>
<div class="c">
. . . . . . . . A/Peru/152/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467373" target="_blank">EPI467373</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145661" target="_blank">EPI_ISL_145661</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (12 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">374V</span></b>,</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn494E (GAa),</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467203"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7603_C1_26F_2013_06_12 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7603/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 186P, 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467203" target="_blank">EPI467203</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145629" target="_blank">EPI_ISL_145629</a></div>
<div class="c">
. . . . . . . . 24 Polymorphisms (13 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">186P</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">440H mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467200"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7703_C1_56F_2013_06_10 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7703/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/467200" target="_blank">EPI467200</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145628" target="_blank">EPI_ISL_145628</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (11 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . syn199D (GAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465708"></a><o:p></o:p></div>
<div class="c">
. . . . Haiti1792_C2C2_<b><span style="color: #993300;">1F</span></b>_2013_06_02 (</div>
<div class="c">
. . . . . . . . A/Haiti/1792/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #783f04;">Diverse</span></b> <b><span style="color: #274e13;">Neuraminidase</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 175K, 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/465708" target="_blank">EPI465708</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145096" target="_blank">EPI_ISL_145096</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (13 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">175K</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">333L mix</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477012"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_E3E1_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Rep/7293/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477012" target="_blank">EPI477012</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148585" target="_blank">EPI_ISL_148585</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (16 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74Y</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E</span></b> [H5N1 wild type],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 226R,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">260V</span></b>,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">285S</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477010"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_C2M1_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Rep/7293/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/477010" target="_blank">EPI477010</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148584" target="_blank">EPI_ISL_148584</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (14 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74Y</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">212N</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">260V</span></b>,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI466874"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_C2_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/466874" target="_blank">EPI466874</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145504" target="_blank">EPI_ISL_145504</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (14 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74Y</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">212N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">260V</span></b>,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI468082"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_E4_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/468082" target="_blank">EPI468082</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145497" target="_blank">EPI_ISL_145497</a></div>
<div class="c">
. . . . . . . . 27 Polymorphisms (16 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74Y</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E</span></b> [H5N1 wild type],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 226R,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">260V</span></b>,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">285S</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457507"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_E2_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/457507" target="_blank">EPI457507</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142877" target="_blank">EPI_ISL_142877</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (15 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74Y</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">130E</span></b> [H5N1 wild type],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">260V</span></b>,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">285S</span></b>,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457503"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_C1_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/457503" target="_blank">EPI457503</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142876" target="_blank">EPI_ISL_142876</a></div>
<div class="c">
. . . . . . . . 25 Polymorphisms (14 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">74Y</span></b>,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">212N mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">260V</span></b>,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457456"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7291_C1_25F_2013_05_01_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7291/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">158E</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 124N, 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/457456" target="_blank">EPI457456</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142866" target="_blank">EPI_ISL_142866</a></div>
<div class="c">
. . . . . . . . 26 Polymorphisms (14 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">124N</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">158E mix wt</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">445M</span></b>,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn546L (tTA))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI450490"></a><o:p></o:p></div>
<div class="c">
. . . . Macau600062_M3_<b><span style="color: #993300;">3F</span></b>_2013_01_23 (</div>
<div class="c">
. . . . . . . . A/MACAU/600062/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/450490" target="_blank">EPI450490</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/141597" target="_blank">EPI_ISL_141597</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (11 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119M</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">289V</span></b> [pH1N1 with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">230I</span></b>,<b><span style="color: blue;"><o:p></o:p></span></b></div>
<div class="c">
. . . . . . . . . . . . <b>Ukraine123_2010_02_14_xL</b>
</div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span> <span style="color: blue;">186P,
208K</span></b>, <a href="http://pf11.blogspot.com/2010/11/ha-230i-demonstrated-in-ukraine-cross.html" target="_blank">230I</a>,</div>
<div class="c">
. . . . . . . . . . . . <b>UKGlascow_SC10_2009_06</b></div>
<div class="c">
. . . . . . . . . . . . . . . . with <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">225G</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [H5N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn379T (ACc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn414V (GTa),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI409895"></a><o:p></o:p></div>
<div class="c">
. . . . Brazil3479_C1C1_<b><span style="color: #993300;">14M</span></b>_2012_10_16 (</div>
<div class="c">
. . . . . . . . A/Brazil/3479/2012</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/409895" target="_blank">EPI409895</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/133154" target="_blank">EPI_ISL_133154</a></div>
<div class="c">
. . . . . . . . 19 Polymorphisms (8 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . #2V,</div>
<div class="c">
. . . . . . . . syn0T (ACa),</div>
<div class="c">
. . . . . . . . syn41N (AAt),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn86S (TCc),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn212K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">263T</span></b> [H6N1],</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn458N (AAt),</div>
<div class="c">
. . . . . . . . syn464G (GGg),</div>
<div class="c">
. . . . . . . . syn465N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI357510"></a><o:p></o:p></div>
<div class="c">
. . . . KenyaRVP193_M1_<b><span style="color: #993300;">1F</span></b>_2011_11_16 (</div>
<div class="c">
. . . . . . . . A/Kenya/193/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">262K</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/357510" target="_blank">EPI357510</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/106803" target="_blank">EPI_ISL_106803</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (11 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . 1T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">26D</span></b>,</div>
<div class="c">
. . . . . . . . syn30T (ACg),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140S</span></b>,</div>
<div class="c">
. . . . . . . . syn158G (GGg),</div>
<div class="c">
. . . . . . . . syn179L (tTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn189A (GCa),</div>
<div class="c">
. . . . . . . . syn261E (GAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],</div>
<div class="c">
. . . . . . . . syn319T (ACg),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">458T</span></b>,</div>
<div class="c">
. . . . . . . . syn460A (GCt),</div>
<div class="c">
. . . . . . . . syn470F (TTc),</div>
<div class="c">
. . . . . . . . syn546L (CTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">547L</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI357513"></a><o:p></o:p></div>
<div class="c">
. . . . KenyaRVP196_M1_<b><span style="color: #993300;">13F</span></b>_2011_11_10 (</div>
<div class="c">
. . . . . . . . A/Kenya/196/2011<br />
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation </span><span style="color: #274e13;">NA</span><span style="color: #783f04;"> </span><span style="color: blue;">260R</span></b><br />
. . . . . . . . <b><span style="color: #783f04;">Diverse</span></b> <b><span style="color: #274e13;">Neuraminidase</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Clade5: 208K_219V</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/357513" target="_blank">EPI357513</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/106806" target="_blank">EPI_ISL_106806</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (9 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . 1T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">26D</span></b>,</div>
<div class="c">
. . . . . . . . syn30T (ACg),</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn157K (AAg),</div>
<div class="c">
. . . . . . . . syn170N (AAc),</div>
<div class="c">
. . . . . . . . 208K,</div>
<div class="c">
. . . . . . . . 219V,</div>
<div class="c">
. . . . . . . . 252L,</div>
<div class="c">
. . . . . . . . syn369K (AAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn446K (AAa),</div>
<div class="c">
. . . . . . . . syn464G (GGg),</div>
<div class="c">
. . . . . . . . 513T)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI316316"></a><o:p></o:p></div>
<div class="c">
. . . . SwedenLinkoping4_24F_2011_01_05 (</div>
<div class="c">
. . . . . . . . A/Linkoping/4/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/316316" target="_blank">EPI316316</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/89889" target="_blank">EPI_ISL_89889</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn245F (TTt),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI287698"></a><o:p></o:p></div>
<div class="c">
. . . . ChinaQingdao123_2010_02 (</div>
<div class="c">
. . . . . . . . A/Qingdao/123/2010</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/287698" target="_blank">EPI287698</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/81585" target="_blank">EPI_ISL_81585</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (2 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . 131P)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI394502"></a><o:p></o:p></div>
<div class="c">
. . . . JapanTottoriST499_M_2010_01 (</div>
<div class="c">
. . . . . . . . A/Tottori/ST499/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/394502" target="_blank">EPI394502</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/128786" target="_blank">EPI_ISL_128786</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (5 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn134G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140L</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">160T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">377V</span></b>,</div>
<div class="c">
. . . . . . . . syn413K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">458T</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI394501"></a><o:p></o:p></div>
<div class="c">
. . . . JapanTottoriST494_M_2010_01 (</div>
<div class="c">
. . . . . . . . A/Tottori/ST494/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/394501" target="_blank">EPI394501</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/128785" target="_blank">EPI_ISL_128785</a></div>
<div class="c">
. . . . . . . . 7 Polymorphisms (5 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn134G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140L</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">160T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">377V</span></b>,</div>
<div class="c">
. . . . . . . . syn413K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">458T</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI240592"></a><o:p></o:p></div>
<div class="c">
. . . . JapanHiroshimaC395_M2+1_2009_11_24 (</div>
<div class="c">
. . . . . . . . A/HIROSHIMA-C/395/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/240592" target="_blank">EPI240592</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/69056" target="_blank">EPI_ISL_69056</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (4 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn134G (GGc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">140L</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">160T</span></b>,</div>
<div class="c">
. . . . . . . . syn413K (AAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">458T</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI246596"></a><o:p></o:p></div>
<div class="c">
. . . . NewYorkNiagara5141_<b><span style="color: #993300;">5mM</span></b>_2009_10_16 (</div>
<div class="c">
. . . . . . . . A/New York/5141/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/246596" target="_blank">EPI246596</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71255" target="_blank">EPI_ISL_71255</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn131S (TCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">276Y</span></b> [<st1:country-region>Greece</st1:country-region><a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476401">Giannitsa1052</a>_78F_2011_02_10_<b><span style="color: red;">f</span></b>],</div>
<div class="c">
. . . . . . . . syn390N (AAc),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI374151"></a><o:p></o:p></div>
<div class="c">
. . . . Malaysia2173411_P1_2009_09_15 (</div>
<div class="c">
. . . . . . . . A/Malaysia/2173411/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/374151" target="_blank">EPI374151</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/120468" target="_blank">EPI_ISL_120468</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (1 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn242K (AAg),</div>
<div class="c">
. . . . . . . . syn325P (CCt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI218346"></a><o:p></o:p></div>
<div class="c">
. . . . NorwayMoreOgRomsdal3370_M1_<b><span style="color: #993300;">0F</span></b>_2009_09_01 (</div>
<div class="c">
. . . . . . . . A/Norway/3370/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/218346" target="_blank">EPI218346</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/62580" target="_blank">EPI_ISL_62580</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . syn85T (ACg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">298T mix wt</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">324I</span></b>,</div>
<div class="c">
. . . . . . . . syn413K (AAg))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI335496"></a><o:p></o:p></div>
<div class="c">
. . . . BrazilGoias69866_50F_2009_08_21_<b><span style="color: red;">VxX_f</span></b> (</div>
<div class="c">
. . . . . . . . A/Goias/69866/2009</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Fatality</span></b></div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccine Escape Genotype </span><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">225G</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/335496" target="_blank">EPI335496</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/95971" target="_blank">EPI_ISL_95971</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (2 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">225G</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI211434"></a><o:p></o:p></div>
<div class="c">
. . . . Iowa07_C1_<b><span style="color: #993300;">11M</span></b>_2009_08_01 (</div>
<div class="c">
. . . . . . . . A/Iowa/07/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/211434" target="_blank">EPI211434</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/60803" target="_blank">EPI_ISL_60803</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . 206S,</div>
<div class="c">
. . . . . . . . syn216E (GAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">244I</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI353337"></a><o:p></o:p></div>
<div class="c">
. . . . AustriaLower245_St1_29F_2009_07_29_s (</div>
<div class="c">
. . . . . . . . A/Austria/245/2009</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/353337" target="_blank">EPI353337</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/103663" target="_blank">EPI_ISL_103663</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (3 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa#12,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">#8L</span></b>,</div>
<div class="c">
. . . . . . . . 33I,</div>
<div class="c">
. . . . . . . . 46R,</div>
<div class="c">
. . . . . . . . HA Truncated after aa371)</div>
<div class="c">
<br /></div>
<div style="text-align: center;">
<span style="font-size: x-large;"><b><span style="color: #274e13;">NA</span> Polymorphisms</b></span></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI466954"></a><o:p></o:p></div>
<div class="c">
. . . . Delaware09_C1_xF_2013_08_02 (</div>
<div class="c">
. . . . . . . . A/Delaware/09/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/466954" target="_blank">EPI466954</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145524" target="_blank">EPI_ISL_145524</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (6 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn110S (TCa),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . 220K,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa),</div>
<div class="c">
. . . . . . . . syn453V (GTt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465402"></a><o:p></o:p></div>
<div class="c">
. . . . Haiti2030_C2C1_4x_2013_06_18_<b><span style="color: #993300;">TmX</span></b> (</div>
<div class="c">
. . . . . . . . A/Haiti/2030/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #7f6000;">TamiFlu Resistant</span></b> GenoType <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">275Y</span></b><br />
. . . . . . . . <b><span style="color: #993300;">H7N9 Correlation </span></b><b><span style="color: #003300;">HA</span><span style="color: red;"> </span><span style="color: blue;">119M</span></b><br />
. . . . . . . . <b><span style="color: maroon;">Rare Set</span></b> <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">237I</span></b> and <b><span style="color: #003300;">HA</span></b> <b><span style="color: blue;">259T</span></b><br />
. . . . . . . . <b><span style="color: #993300;">CrossClade 188T and 208K</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465402" target="_blank">EPI465402</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145078" target="_blank">EPI_ISL_145078</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (7 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">138T</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275Y</span></b>,</div>
<div class="c">
. . . . . . . . syn320G (GGa),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467372"></a><o:p></o:p></div>
<div class="c">
. . . . Peru152_C1C1_2M_2013_06_13 (</div>
<div class="c">
. . . . . . . . A/Peru/152/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467372" target="_blank">EPI467372</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145661" target="_blank">EPI_ISL_145661</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (7 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 72I,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">138T</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467202"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7603_C1_26F_2013_06_12 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7603/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467202" target="_blank">EPI467202</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145629" target="_blank">EPI_ISL_145629</a></div>
<div class="c">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn125S (TCt),</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn370G (GGc),</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI467199"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7703_C1_56F_2013_06_10 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7703/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/467199" target="_blank">EPI467199</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145628" target="_blank">EPI_ISL_145628</a></div>
<div class="c">
. . . . . . . . 15 Polymorphisms (7 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">77V</span></b> [H5N9 Emu],</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">138T</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn390K (AAa),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI465474"></a><o:p></o:p></div>
<div class="c">
. . . . Haiti1792_C2C2_1F_2013_06_02 (</div>
<div class="c">
. . . . . . . . A/Haiti/1792/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Diverse</span></b> <b><span style="color: #274e13;">Neuraminidase</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/465474" target="_blank">EPI465474</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145096" target="_blank">EPI_ISL_145096</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (7 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn12S (TCa),</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . syn82S (TCt),</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">138T</span></b> [H9N2],</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn217K (AAa),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">314M</span></b> [avH1N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn395G (GGg),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477013"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_E3E1_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Rep/7293/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477013" target="_blank">EPI477013</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148585" target="_blank">EPI_ISL_148585</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI477011"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_C2M1_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Rep/7293/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/477011" target="_blank">EPI477011</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148584" target="_blank">EPI_ISL_148584</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI466873"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_C2_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/466873" target="_blank">EPI466873</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145504" target="_blank">EPI_ISL_145504</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI466821"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_E4_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/466821" target="_blank">EPI466821</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/145497" target="_blank">EPI_ISL_145497</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457506"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_E2_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/457506" target="_blank">EPI457506</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142877" target="_blank">EPI_ISL_142877</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">284N mix wt</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b> First Base Donor <b><span style="color: blue;">aAg</span></b>],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457502"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7293_C1_19F_2013_05_01 (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7293/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/457502" target="_blank">EPI457502</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142876" target="_blank">EPI_ISL_142876</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI457455"></a><o:p></o:p></div>
<div class="c">
. . . . DominicanRep7291_C1_25F_2013_05_01_<b><span style="color: red;">VxX</span></b> (</div>
<div class="c">
. . . . . . . . A/Dominican Republic/7291/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/457455" target="_blank">EPI457455</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/142866" target="_blank">EPI_ISL_142866</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (5 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . syn183A (GCa),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . syn404G (GGa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI450489"></a><o:p></o:p></div>
<div class="c">
. . . . Macau600062_M3_3F_2013_01_23 (</div>
<div class="c">
. . . . . . . . A/MACAU/600062/2013</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/450489" target="_blank">EPI450489</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/141597" target="_blank">EPI_ISL_141597</a></div>
<div class="c">
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)</div>
<div class="c">
. . . . . . . . syn21N (AAt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">42K</span></b>,</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn205V (GTa) [<b><span style="color: #660000;">Emergent H7N9</span></b> wild type],<br />
. . . . . . . . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI409894"></a><o:p></o:p></div>
<div class="c">
. . . . Brazil3479_C1C1_14M_2012_10_16 (</div>
<div class="c">
. . . . . . . . A/Brazil/3479/2012</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/409894" target="_blank">EPI409894</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/133154" target="_blank">EPI_ISL_133154</a></div>
<div class="c">
. . . . . . . . 9 Polymorphisms (4 Amino and 5 Silent)</div>
<div class="c">
. . . . . . . . syn162P (CCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . syn351F (TTt),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn416D (GAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">467V</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI357514"></a><o:p></o:p></div>
<div class="c">
. . . . KenyaRVP196_M1_13F_2011_11_10 (</div>
<div class="c">
. . . . . . . . A/Kenya/196/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">H7N9 Correlation </span><span style="color: #274e13;">NA</span><span style="color: #783f04;"> </span><span style="color: blue;">260R</span></b><br />
. . . . . . . . <b><span style="color: #783f04;">Diverse</span></b> <b><span style="color: #274e13;">Neuraminidase</span></b><br />
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/357514" target="_blank">EPI357514</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/106806" target="_blank">EPI_ISL_106806</a></div>
<div class="c">
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">4T</span></b>,</div>
<div class="c">
. . . . . . . . 19V,</div>
<div class="c">
. . . . . . . . syn47E (GAg),</div>
<div class="c">
. . . . . . . . 82P,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,<br />
. . . . . . . . <b><span style="color: blue;">260R</span></b> [<b><span style="color: #660000;">Emergent H7N9</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [avH1N1<sub>farm</sub>],<br />
. . . . . . . . . . . . [H5N1],<br />
. . . . . . . . . . . . [H6N1],</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">394I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">461D</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">468G</span></b>)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI316317"></a><o:p></o:p></div>
<div class="c">
. . . . SwedenLinkoping4_24F_2011_01_05 (</div>
<div class="c">
. . . . . . . . A/Linkoping/4/2011</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/316317" target="_blank">EPI316317</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/89889" target="_blank">EPI_ISL_89889</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">54V</span></b>,</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn416D (GAc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI246598"></a><o:p></o:p></div>
<div class="c">
. . . . NewYorkNiagara5141_5mM_2009_10_16 (</div>
<div class="c">
. . . . . . . . A/New York/5141/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/246598" target="_blank">EPI246598</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/71255" target="_blank">EPI_ISL_71255</a></div>
<div class="c">
. . . . . . . . 1 Polymorphisms (1 Amino and 0 Silent)</div>
<div class="c">
. . . . . . . . 81A)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI374153"></a><o:p></o:p></div>
<div class="c">
. . . . Malaysia2173411_P1_2009_09_15 (</div>
<div class="c">
. . . . . . . . A/Malaysia/2173411/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/374153" target="_blank">EPI374153</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/120468" target="_blank">EPI_ISL_120468</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . syn82S (TCa),</div>
<div class="c">
. . . . . . . . syn393I (ATa))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI211435"></a><o:p></o:p></div>
<div class="c">
. . . . Iowa07_C1_11M_2009_08_01 (</div>
<div class="c">
. . . . . . . . A/Iowa/07/2009</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/211435" target="_blank">EPI211435</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/60803" target="_blank">EPI_ISL_60803</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (1 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . syn20A (GCc),</div>
<div class="c">
. . . . . . . . 26L,</div>
<div class="c">
. . . . . . . . syn364S (AGt),</div>
<div class="c">
. . . . . . . . syn443I (ATc))</div>
<br />
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<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> & <b><span style="color: #274e13;">Neuraminidase</span></b> Segments elucidated at 2013-11-03-23_23_58_369050 by <b><span style="color: #783f04;">GeneWurx</span></b> see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 <b><span style="color: #783f04;">GeneWurx</span></b>.com, All Rights Reserved.</i></span></div>
NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-29575575555788274432013-10-15T13:24:00.000-05:002013-11-18T01:28:27.831-06:00Greece Documents pH1N1 Fatalities on Multiple Backgrounds during Early 2011<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_10_08_Greece_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-10-15<br />
Last Update : 2013-11-18</span><br />
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2013_10_08_Greece_f_Map.html" target="_blank"><img alt="Greek Fatalities on Multiple Backgrounds" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2013_10_08_Greece_f_Map.html" target="_blank">Map -
Active and Detailed</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
57 <b><span style="color: #274e13;">HA</span></b> Sequences<br />
<hr style="width: 35%;" />
</div>
<br />
On 2013-10-08, the <span style="color: #783f04;"><b>National Influenza Centre for Northern Greece</b></span> released a total of <b>57</b> <strong><span style="color: #4c1130;">pH1N1</span></strong> <b><span style="color: #274e13;">Hemagglutinin </span></b>sequence fragments at <strong>GISAID </strong>having 2 from early 2013, but with the larger set sampled during January and February 2011 [<a href="http://genewurx.com/data/map/2013_10_08_Greece_f_Map.html" target="_blank">map</a>]. All 57 patients sought medical attention. The <b><span style="color: #274e13;">Neuraminidase</span></b> segments were not released. A total of 9 <b><span style="color: #660000;">fatalities</span></b> are documented and 6 subjects were under the age of 60 at the time of their death from Influenza. <br />
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px; width: 100%;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Greek Fatalities</td>
</tr>
<tr style="float: center; width: 100%;">
<td style="vertical-align: top; width: 100%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8);" title="6 of 9 Greek Deaths Under Age 60">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4"><span style="color: #4c1130;">pH1N1</span><br />
<span style="color: #ffd966;">6 of 9</span> Greek Deaths Are <span style="color: #ffd966;">Under Age 60</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Clade</th><th style="text-align: center;">Name</th><th style="text-align: center;">Age</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki410_52F_2013_01_31<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;"><b>52</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476396" style="font-size: 80%;" target="_blank">EPI476396</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki1391_47M_2011_02_21<b><span style="color: #660000;">_VxX_f</span></b> </td><td style="text-align: center;"><b>47</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476395" style="font-size: 80%;" target="_blank">EPI476395</a> </td></tr>
<tr style="font-size: 90%;"><td style="font-size: 110%;"> <b>None</b> </td><td> GreeceThessaloniki1329_56F_2011_02_17<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;"><b>56</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476409" style="font-size: 80%;" target="_blank">EPI476409</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki1151_49F_2011_02_14<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;"><b>49</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476400" style="font-size: 80%;" target="_blank">EPI476400</a> </td></tr>
<tr style="font-size: 90%;"><td style="font-size: 110%;"> <b>Clade5</b> </td><td> GreeceThessaloniki1164_76M_2011_02_14<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;">76</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476399" style="font-size: 80%;" target="_blank">EPI476399</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceGiannitsa1052_78F_2011_02_10<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;">78</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476401" style="font-size: 80%;" target="_blank">EPI476401</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki678_56M_2011_02_07<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;"><b>56</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476398" style="font-size: 80%;" target="_blank">EPI476398</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceKavala470_46M_2011_02_01<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;"><b>46</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476406" style="font-size: 80%;" target="_blank">EPI476406</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki407_66M_2011_01_31<b><span style="color: #660000;">_f</span></b></td><td style="text-align: center;">66</td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476397" style="font-size: 80%;" target="_blank">EPI476397</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
Genetic diversity and pathogenic vigor are demonstrated as these deaths are found on <b><span style="color: #783f04;">3 separate backgrounds</span></b>: 2 established clades and 1 off-clade death. <span style="color: #783f04; font-weight: bold;">Diversity in excess </span>of<span style="color: #783f04; font-weight: bold;"> 4 </span>clades was circulating contemporaneously in that region during the <b>36</b> days of 2011 sampling. Sequences covering <b>hospitalisations</b> total 4 in this deposit.<br />
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px; width: 100%;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td>Greek Hospitalisations</td>
</tr>
<tr style="float: center; width: 100%;">
<td style="vertical-align: top; width: 100%;"><table align="left" border="1" cellpadding="1" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8);" title="100% Greek Reported In-Patients Under Age 60">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4"><span style="color: #4c1130;">pH1N1</span><br />
<span style="color: #ffd966;">100%</span> of Greek InPatients Are <span style="color: #ffd966;">Under Age 60</span></td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Clade</th><th style="text-align: center;">Name</th><th style="text-align: center;">Age</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceKilkis1524_52F_2011_02_24<b><span style="color: #660000;">_s</span></b></td><td style="text-align: center;"><b>52</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI474960" style="font-size: 80%;" target="_blank">EPI474960</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki1378_50M_2011_02_18<b><span style="color: #660000;">_s</span></b> </td><td style="text-align: center;"><b>50</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI475846" style="font-size: 80%;" target="_blank">EPI475846</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki1168_54F_2011_02_14<b><span style="color: #660000;">_s</span></b></td><td style="text-align: center;"><b>54</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI475829" style="font-size: 80%;" target="_blank">EPI475829</a> </td></tr>
<tr style="font-size: 90%;"><td> Clade2 </td><td> GreeceThessaloniki287_56F_2011_01_27<b><span style="color: #660000;">_s</span></b></td><td style="text-align: center;"><b>56</b></td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI475853" style="font-size: 80%;" target="_blank">EPI475853</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
The genetics of <b><span style="color: #660000;">Vaccine Escape</span></b> are evident in 3 sequences across 2 clades, including 2 <b><span style="color: #660000;">fatalities</span></b>. <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">225N</span></b> is shown on an unusual background in the area of <b>Xanthi</b> [<a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476404" style="font-size: 80%;" target="_blank">EPI476404</a>]. Dual infections signalled by mixtures feature on these fragments, including one of the <b><span style="color: #660000;">fatalities</span></b>. The <b>Komotini</b> [<a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI475900" style="font-size: 80%;" target="_blank">EPI475900</a>] sequence shows <b><span style="color: blue;">Clade1:189T</span></b> crossing onto <b><span style="color: blue;">Clade2:188T</span></b>. <br />
<br />
<table align="center" border="0px" cellpadding="15px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 15px; padding-right: 15px; padding-top: 2px; width: 100%;">
<tbody>
<tr style="-webkit-text-fill-color: goldenrod; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="3">Greek Vaccine Escape Early 2011</td>
</tr>
<tr style="float: center; width: 100%;">
<td style="vertical-align: top; width: 100%;">
<table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 40%;" title="Vaccine Escape Diversity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="4">Vaccine Escape Diversity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Type</th><th style="text-align: center;">Observation</th><th style="text-align: center;">Name</th><th style="text-align: center;">ID</th></tr>
<tr style="font-size: 90%;"><td> GenoTypic </td><td> <b><span style="color: #660000;">VxX</span></b> 155I </td><td> GreeceThessaloniki1391_47M_2011_02_21<b><span style="color: #660000;">_VxX_f</span></b> </td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476395" style="font-size: 80%;" target="_blank">EPI476395</a> </td></tr>
<tr style="font-size: 90%;"><td> GenoTypic </td><td> <b><span style="color: #660000;">VxX</span></b> 155I </td><td> GreeceThessaloniki839_59M_2011_02_08<b><span style="color: #660000;">_VxX</span></b> </td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI475899" style="font-size: 80%;" target="_blank">EPI475899</a> </td></tr>
<tr style="font-size: 90%;"><td> GenoTypic </td><td> <b><span style="color: #660000;">VxX</span></b> 225N </td><td> GreeceXanthi265_50M_2011_01_27<b><span style="color: #660000;">_VxX</span></b> </td><td style="text-align: center;"> <a href="http://pf11.blogspot.com/2013/10/greece-documents-ph1n1-fatalities-on.html#EPI476404" style="font-size: 80%;" target="_blank">EPI476404</a> </td></tr>
</tbody></table>
</td></tr>
</tbody></table>
<br />
We have annotated these <b><span style="color: #274e13;">HA</span></b> fragments and placed them geographically throughout <b>Greece</b> for reference [<a href="http://genewurx.com/data/map/2013_10_08_Greece_f_Map.html" target="_blank">map</a>].<br />
<br />
<table align="center" border="0px" cellpadding="5px" cellspacing="0px" style="background-color: #ffe9c4; border-color: darkred; border-radius: 4px; border-style: ridge; border-width: 12px; box-shadow: 0 5px 15px rgba(0,0,0,0.8); padding-bottom: 2px; padding-left: 3px; padding-right: 3px; padding-top: 2px; width: 70%;">
<tbody>
<tr style="-webkit-text-fill-color: white; -webkit-text-stroke: 1px black; color: black; font-size: 200%; font-weight: bold; text-align: center; text-shadow: 3px 3px 0 #000, -1px -1px 0 #000, 1px -1px 0 #000, -1px 1px 0 #000, 1px 1px 0 #000;">
<td colspan="2">Isolate Metrics</td>
</tr>
<tr style="float: center;">
<td style="vertical-align: top; width: 41%;"><table align="center" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 70%;" title="Calendar">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Calendar</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Sample<br />
Month</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2013-02 </td><td>01</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2013-01 </td><td>01</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2011-02 </td><td>37</td></tr>
<tr style="font-size: 90%; text-align: center;"><td style="text-align: left;"> 2011-01 </td><td>18</td></tr>
</tbody></table>
</td>
<td style="vertical-align: top; width: 59%;"><table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 80%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">CladeName</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">48</td></tr>
<tr style="font-size: 90%;"><td> Clade5:208K_219V</td><td style="text-align: center;">05</td></tr>
<tr style="font-size: 90%;"><td> <b><span style="color: #783f04;">CrossClade</span></b>:<br />
188T_189T</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> UnCladed</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> Clade3:186P</td><td style="text-align: center;">01</td></tr>
<tr style="font-size: 90%;"><td> Clade4:128D</td><td style="text-align: center;">01</td></tr>
</tbody></table>
</td>
</tr>
</tbody></table>
<br />
<div style="text-align: center;">
<b><span style="color: #274e13; font-size: x-large;">Hemagglutinin </span><span style="font-size: x-large;">Sequences</span></b></div>
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI475832"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKavala464_48F_2013_02_01 (<br />
. . . . . . . . A/Kavala/464/2011<br />
. . . . . . . . <b><span style="color: #783f04;">Clade5:208K_219V</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475832" target="_blank">EPI475832</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148171" target="_blank">EPI_ISL_148171</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn170N (AAc),</div>
<div class="c">
. . . . . . . . 208K,</div>
<div class="c">
. . . . . . . . 219V,</div>
<div class="c">
. . . . . . . . syn221P (CCt),</div>
<div class="c">
. . . . . . . . 252L,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476396"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki410_52F_2013_01_31<b><span style="color: #660000;">_f</span></b> (<br />
. . . . . . . . A/Thessaloniki/410/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476396" target="_blank">EPI476396</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148268" target="_blank">EPI_ISL_148268</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn174K (AAg),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">200V mix wt</span></b>,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI474960"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKilkis1524_52F_2011_02_24<b>_s</b> (<br />
. . . . . . . . A/Kilkis/1524/2011 </div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/474960" target="_blank">EPI474960</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148032" target="_blank">EPI_ISL_148032</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn160S (TCg),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476395"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki1391_47M_2011_02_21_<b><span style="color: #660000;">VxX_f</span></b> (<br />
. . . . . . . . A/Thessaloniki/1391/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476395" target="_blank">EPI476395</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148267" target="_blank">EPI_ISL_148267</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155I</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475846"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki1378_50M_2011_02_18<b>_s</b> (<br />
. . . . . . . . A/Thessaloniki/1378/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475846" target="_blank">EPI475846</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148185" target="_blank">EPI_ISL_148185</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476409"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki1329_56F_2011_02_17<b><span style="color: #660000;">_f </span></b>(<br />
. . . . . . . . A/Thessaloniki/1329/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476409" target="_blank">EPI476409</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148281" target="_blank">EPI_ISL_148281</a><br />
. . . . . . . . <b><span style="color: #660000;">Off-Clade Fatality</span></b></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (6 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn52P (CCc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">54R</span></b> [avH1N1],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">58W</span></b>,</div>
<div class="c">
. . . . . . . . syn62G (GGg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">64V</span></b> [avH1N1, H7N7, H9N2],</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">65R</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . syn286K (AAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">303L</span></b> [H13N2],</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476393"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceAlexandroupolis1290_79M_2011_02_16 (<br />
. . . . . . . . A/Alexandroupolis/1290/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476393" target="_blank">EPI476393</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148265" target="_blank">EPI_ISL_148265</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn163K (AAa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn192Q (CAg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475845"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceAlexandroupolis1219_46M_2011_02_15 (<br />
. . . . . . . . A/Alexandroupolis/1219/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475845" target="_blank">EPI475845</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148184" target="_blank">EPI_ISL_148184</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn163K (AAa),</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn192Q (CAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">241E</span></b> [H5N1, avH1N1farm, H13N2],</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476400"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki1151_49F_2011_02_14<b><span style="color: #660000;">_f </span></b>(<br />
. . . . . . . . A/Thessaloniki/1151/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476400" target="_blank">EPI476400</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148272" target="_blank">EPI_ISL_148272</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn304G (GGg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476399"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki1164_76M_2011_02_14<b><span style="color: #660000;">_f</span></b> (<br />
. . . . . . . . A/Thessaloniki/1164/2011<br />
. . . . . . . . <b><span style="color: #783f04;">Clade5:208K_219V</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476399" target="_blank">EPI476399</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148271" target="_blank">EPI_ISL_148271</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn170N (AAc),</div>
<div class="c">
. . . . . . . . 208K,</div>
<div class="c">
. . . . . . . . 219V,</div>
<div class="c">
. . . . . . . . syn221P (CCt),</div>
<div class="c">
. . . . . . . . 252L,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475829"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki1168_54F_2011_02_14<b>_s</b> (<br />
. . . . . . . . A/Thessaloniki/1168/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475829" target="_blank">EPI475829</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148168" target="_blank">EPI_ISL_148168</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">116M</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475828"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki1167_76M_2011_02_14 (<br />
. . . . . . . . A/Thessaloniki/1167/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475828" target="_blank">EPI475828</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148167" target="_blank">EPI_ISL_148167</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn62G (GGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">173R</span></b> [av<b>H7N9</b> 2011, H5N1, avH1N1],</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn304G (GGg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476401"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceGiannitsa1052_78F_2011_02_10<b><span style="color: #660000;">_f</span></b> (<br />
. . . . . . . . A/Giannitsa/1052/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476401" target="_blank">EPI476401</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148273" target="_blank">EPI_ISL_148273</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">276Y</span></b>,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476392"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki983_77F_2011_02_09 (<br />
. . . . . . . . A/Thessaloniki/983/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476392" target="_blank">EPI476392</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148264" target="_blank">EPI_ISL_148264</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476402"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki774_46M_2011_02_08 (<br />
. . . . . . . . A/Thessaloniki/774/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476402" target="_blank">EPI476402</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148274" target="_blank">EPI_ISL_148274</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476391"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceAlexandroupolis819_79M_2011_02_08 (<br />
. . . . . . . . A/Alexandroupolis/819/2011<br />
. . . . . . . . <b><span style="color: #783f04;">Clade5:208K_219V</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476391" target="_blank">EPI476391</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148263" target="_blank">EPI_ISL_148263</a></div>
<div class="c">
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn162P (CCg),</div>
<div class="c">
. . . . . . . . syn170N (AAc),</div>
<div class="c">
. . . . . . . . 208K,</div>
<div class="c">
. . . . . . . . 219V,</div>
<div class="c">
. . . . . . . . syn221P (CCt),</div>
<div class="c">
. . . . . . . . 252L,</div>
<div class="c">
. . . . . . . . syn319T (ACg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475899"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki839_59M_2011_02_08<b><span style="color: #660000;">_VxX</span></b> (<br />
. . . . . . . . A/Thessaloniki/839/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475899" target="_blank">EPI475899</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148198" target="_blank">EPI_ISL_148198</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn118E (GAa),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">155I</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475851"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceFlorina807_53F_2011_02_08 (<br />
. . . . . . . . A/Florina/807/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475851" target="_blank">EPI475851</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148190" target="_blank">EPI_ISL_148190</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (4 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn24E (GAg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">87I</span></b> [pH1N1 TamiFlu Resistance <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">247N</span></b>],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">110P mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475849"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceXanthi803_62M_2011_02_08 (<br />
. . . . . . . . A/Xanthi/803/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475849" target="_blank">EPI475849</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148188" target="_blank">EPI_ISL_148188</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn42G (GGa),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475844"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceAlexandroupolis815_46x_2011_02_08 (<br />
. . . . . . . . A/Alexandroupolis/815/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475844" target="_blank">EPI475844</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148183" target="_blank">EPI_ISL_148183</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476407"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki677_79M_2011_02_07 (<br />
. . . . . . . . A/Thessaloniki/677/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476407" target="_blank">EPI476407</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148279" target="_blank">EPI_ISL_148279</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (5 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">39R</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">226R</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">318G</span></b>,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476398"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki678_56M_2011_02_07<b><span style="color: #660000;">_f</span></b> (<br />
. . . . . . . . A/Thessaloniki/678/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476398" target="_blank">EPI476398</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148270" target="_blank">EPI_ISL_148270</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475857"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki672_59M_2011_02_07 (<br />
. . . . . . . . A/Thessaloniki/672/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475857" target="_blank">EPI475857</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148196" target="_blank">EPI_ISL_148196</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475843"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki712_47M_2011_02_07 (<br />
. . . . . . . . A/Thessaloniki/712/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475843" target="_blank">EPI475843</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148182" target="_blank">EPI_ISL_148182</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn284T (ACg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475856"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceSerres663_60M_2011_02_04 (<br />
. . . . . . . . A/Serres/663/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475856" target="_blank">EPI475856</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148195" target="_blank">EPI_ISL_148195</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (4 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">136S</span></b> [H5N1, avH1N1, zH3N2, H9N2],</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475855"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki657_57M_2011_02_04 (<br />
. . . . . . . . A/Thessaloniki/657/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475855" target="_blank">EPI475855</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148194" target="_blank">EPI_ISL_148194</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">173R</span></b> [av<b>H7N9</b> 2011, H5N1, avH1N1],</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . syn276H (CAt),</div>
<div class="c">
. . . . . . . . syn304G (GGg),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475848"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki654_64M_2011_02_04 (<br />
. . . . . . . . A/Thessaloniki/654/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475848" target="_blank">EPI475848</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148187" target="_blank">EPI_ISL_148187</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475838"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceNaousa626_62M_2011_02_04 (<br />
. . . . . . . . A/Naousa/626/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475838" target="_blank">EPI475838</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148177" target="_blank">EPI_ISL_148177</a></div>
<div class="c">
. . . . . . . . 2 Polymorphisms (1 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn55L (TTa),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475837"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKavala564_58M_2011_02_03 (<br />
. . . . . . . . A/Kavala/564/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475837" target="_blank">EPI475837</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148176" target="_blank">EPI_ISL_148176</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn245F (TTt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476390"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKilkis533_76M_2011_02_02 (<br />
. . . . . . . . A/Kilkis/533/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476390" target="_blank">EPI476390</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148262" target="_blank">EPI_ISL_148262</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475915"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki516_51M_2011_02_02 (<br />
. . . . . . . . A/Thessaloniki/516/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475915" target="_blank">EPI475915</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148213" target="_blank">EPI_ISL_148213</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn25K (AAa),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475836"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceGrevena552_47M_2011_02_02 (<br />
. . . . . . . . A/Grevena/552/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475836" target="_blank">EPI475836</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148175" target="_blank">EPI_ISL_148175</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . syn122K (AAa),</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475831"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki515_64M_2011_02_02 (<br />
. . . . . . . . A/Thessaloniki/515/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475831" target="_blank">EPI475831</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148170" target="_blank">EPI_ISL_148170</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">49E</span></b> [pH1N1 TamiFlu Resistant <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">247N</span></b>],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476406"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKavala470_46M_2011_02_01<b><span style="color: #660000;">_f</span></b> (<br />
. . . . . . . . A/Kavala/470/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476406" target="_blank">EPI476406</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148278" target="_blank">EPI_ISL_148278</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">174R</span></b> [pH1N1 TamiFlu Resistance <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">247N</span></b>, H13N2],</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476403"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKavala463_52M_2011_02_01 (<br />
. . . . . . . . A/Kavala/463/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476403" target="_blank">EPI476403</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148275" target="_blank">EPI_ISL_148275</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (5 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">25R</span></b> [Emergent H7N9 wt],</div>
<div class="c">
. . . . . . . . syn34N (AAt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 146G,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 200T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475908"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki508_52M_2011_02_01 (<br />
. . . . . . . . A/Thessaloniki/508/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475908" target="_blank">EPI475908</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148207" target="_blank">EPI_ISL_148207</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">305E</span></b> [H5N1 wt],</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475841"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKavala469_50F_2011_02_01 (<br />
. . . . . . . . A/Kavala/469/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475841" target="_blank">EPI475841</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148180" target="_blank">EPI_ISL_148180</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475834"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki506_48F_2011_02_01 (<br />
. . . . . . . . A/Thessaloniki/506/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475834" target="_blank">EPI475834</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148173" target="_blank">EPI_ISL_148173</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475833"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki503_50F_2011_02_01 (<br />
. . . . . . . . A/Thessaloniki/503/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475833" target="_blank">EPI475833</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148172" target="_blank">EPI_ISL_148172</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn245F (TTt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476397"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki407_66M_2011_01_31<b><span style="color: #660000;">_f</span></b> (<br />
. . . . . . . . A/Thessaloniki/407/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476397" target="_blank">EPI476397</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148269" target="_blank">EPI_ISL_148269</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475920"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki446_76M_2011_01_31 (<br />
. . . . . . . . A/Thessaloniki/446/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475920" target="_blank">EPI475920</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148217" target="_blank">EPI_ISL_148217</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475903"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki451_51M_2011_01_31 (<br />
. . . . . . . . A/Thessaloniki/451/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475903" target="_blank">EPI475903</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148202" target="_blank">EPI_ISL_148202</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475839"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki447_56M_2011_01_31 (<br />
. . . . . . . . A/Thessaloniki/447/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475839" target="_blank">EPI475839</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148178" target="_blank">EPI_ISL_148178</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">293F</span></b>,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475835"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki453_47M_2011_01_31 (<br />
. . . . . . . . A/Thessaloniki/453/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Clade3: 186P</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475835" target="_blank">EPI475835</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148174" target="_blank">EPI_ISL_148174</a><br />
. . . . . . . . 7 Polymorphisms (3 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">69Q</span></b> [Emergent H7N9 wt],</div>
<div class="c">
. . . . . . . . syn73L (CTt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">137T</span></b>,</div>
<div class="c">
. . . . . . . . syn163K (AAa),</div>
<div class="c">
. . . . . . . . 186P,</div>
<div class="c">
. . . . . . . . syn293L (CTt),</div>
<div class="c">
. . . . . . . . syn324V (GTt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475842"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki329_46M_2011_01_28 (<br />
. . . . . . . . A/Thessaloniki/329/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475842" target="_blank">EPI475842</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148181" target="_blank">EPI_ISL_148181</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn58C (TGc),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476404"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceXanthi265_50M_2011_01_27<b><span style="color: #660000;">_VxX</span></b> (<br />
. . . . . . . . A/Xanthi/265/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Clade5:208K_219V</span></b> with <b><span style="color: blue;">225N</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476404" target="_blank">EPI476404</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148276" target="_blank">EPI_ISL_148276</a><br />
. . . . . . . . 10 Polymorphisms (6 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">33G</span></b>,</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn170N (AAc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">208K</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">219V</span></b>,</div>
<div class="c">
. . . . . . . . syn221P (CCt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue; font-size: large;">225N</span></b>,</div>
<div class="c">
. . . . . . . . 252L,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475900"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKomotini261_55M_2011_01_27 (<br />
. . . . . . . . A/Komotini/261/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">CrossClade:188T_189T</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475900" target="_blank">EPI475900</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148199" target="_blank">EPI_ISL_148199</a><br />
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">188T</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">189T</span></b>,</div>
<div class="c">
. . . . . . . . syn245F (TTt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475853"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki287_56F_2011_01_27<b>_s</b> (<br />
. . . . . . . . A/Thessaloniki/287/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475853" target="_blank">EPI475853</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148192" target="_blank">EPI_ISL_148192</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475852"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki268_57F_2011_01_27 (<br />
. . . . . . . . A/Thessaloniki/268/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Clade5:208K_219V</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475852" target="_blank">EPI475852</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148191" target="_blank">EPI_ISL_148191</a></div>
<div class="c">
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn47L (CTg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn102E (GAa),</div>
<div class="c">
. . . . . . . . syn170N (AAc),</div>
<div class="c">
. . . . . . . . 208K,</div>
<div class="c">
. . . . . . . . 219V,</div>
<div class="c">
. . . . . . . . syn221P (CCt),</div>
<div class="c">
. . . . . . . . 252L,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475854"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceNaousa225_58F_2011_01_26 (<br />
. . . . . . . . A/Naousa/225/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475854" target="_blank">EPI475854</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148193" target="_blank">EPI_ISL_148193</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (4 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">8V</span></b> [avH1N1farm, H5N1, H13N2],</div>
<div class="c">
. . . . . . . . syn21T (ACg),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">200V mix wt</span></b>,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476408"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceKaterini199_51M_2011_01_25 (<br />
. . . . . . . . A/Katerini/199/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476408" target="_blank">EPI476408</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148280" target="_blank">EPI_ISL_148280</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn92T (ACa),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475850"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceSerres213_50M_2011_01_25 (<br />
. . . . . . . . A/Serres/213/2011</div>
<div class="c">
. . . . . . . . <b><span style="color: #783f04;">Clade4: 128D</span></b><br />
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475850" target="_blank">EPI475850</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148189" target="_blank">EPI_ISL_148189</a><br />
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn60I (ATc),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">128D</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">318V</span></b> [H5N1, avH1N1],</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476405"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki174_49F_2011_01_24 (<br />
. . . . . . . . A/Thessaloniki/174/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476405" target="_blank">EPI476405</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148277" target="_blank">EPI_ISL_148277</a></div>
<div class="c">
. . . . . . . . 6 Polymorphisms (5 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">83G mix wt</span></b>,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">253I</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">320E</span></b> [pH1N1 <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">230I</span></b>],</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475830"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki164_61M_2011_01_24 (<br />
. . . . . . . . A/Thessaloniki/164/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475830" target="_blank">EPI475830</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148169" target="_blank">EPI_ISL_148169</a></div>
<div class="c">
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . syn52P (CCc) mix wt,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">262K</span></b> [Emergent H7N9 wt],</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475847"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki118_52M_2011_01_21 (<br />
. . . . . . . . A/Thessaloniki/118/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475847" target="_blank">EPI475847</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148186" target="_blank">EPI_ISL_148186</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI476394"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki73_36F_2011_01_19 (<br />
. . . . . . . . A/Thessaloniki/73/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/476394" target="_blank">EPI476394</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148266" target="_blank">EPI_ISL_148266</a></div>
<div class="c">
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI475840"></a><o:p></o:p></div>
<div class="c">
. . . . GreeceThessaloniki63_60M_2011_01_19 (<br />
. . . . . . . . A/Thessaloniki/63/2011</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475840" target="_blank">EPI475840</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148179" target="_blank">EPI_ISL_148179</a></div>
<div class="c">
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)</div>
<div class="c">
. . . . . . . . HA Truncated before aa4,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">119V</span></b> [H5N1],</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn245F (TTt),</div>
<div class="c">
. . . . . . . . HA Truncated after aa330)</div>
<br />
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<br />
<div style="text-align: center;">
<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> Segments elucidated at 2013-10-15-10_39_00_540770 by GeneWurx see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 GeneWurx.com, All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-64530853196917049462013-10-04T10:29:00.000-05:002014-01-09T20:44:10.787-06:00Vaccine Escape in Sao Paulo, Brazil on July 2013 pH1N1 Case<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_10_02_Brazil_Citation.xls" rel="nofollow" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-10-04<br />
Last Update : 2014-01-09</span><br />
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2013_10_02_Brazil_Map.html" target="_blank"><img alt="2013 Vaccine Escape in Sao Paulo" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2013_10_02_Brazil_Map.html" target="_blank">Geographic Distribution</a></td></tr>
</tbody></table>
<div style="text-align: center;">
<hr style="width: 35%;" />
1 Sequence<br />
<hr style="width: 35%;" />
</div>
<br />
On 2013-10-03, the <span style="color: #783f04;"><b>Instituto Adolfo Lutz of Brazil</b></span> released one <strong><span style="color: #4c1130;">pH1N1</span></strong> <b><span style="color: #274e13;">Hemagglutinin </span></b>sequence at <strong>GISAID </strong>sampled from a 53 year old female in early July. The <b><span style="color: #274e13;">Neuraminidase</span></b> segment was not released. The patient is documented as <b><span style="color: #660000;">having been vaccinated</span></b> in <b>2013</b>.<br />
<br />
<table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 40%;" title="Vaccine Escape Diversity">
<tbody>
<tr style="background-color: maroon; color: goldenrod; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="3">Vaccine Escape Diversity</td></tr>
<tr style="background-color: maroon; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">Type</th><th style="text-align: center;">Observation</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> PhenoTypic</td><td> <b><span style="color: #660000;">Vaccinated</span></b> 2013</td><td style="text-align: center;">01</td></tr>
</tbody></table>
<br />
This <b><span style="color: #660000;">Vaccine Escape</span></b> case from <b>Sao Paulo, Brazil</b> [<a href="http://genewurx.com/data/map/2013_10_02_Brazil_Map.html" target="_blank">map</a>] is on a genetic background in <b><span style="color: #783f04;">wide circulation</span></b> around the world. That background is expected to be prominent in form during the <b>Northern Hemisphere</b> 2013 season. <br />
<br />
<table align="left" border="1" cellpadding="0" cellspacing="1" style="background-color: navajowhite; border-color: darkslategray; border-radius: 8px; border-style: ridge; border-width: 3px; float: center; margin: 0 auto; vbox-shadow: 0 10px 15px rgba(0,0,0,0.8); width: 33%;" title="Cladistics">
<tbody>
<tr style="background-color: sienna; color: black; font-size: 120%; font-weight: bold; text-align: center;"><td colspan="2">Cladistics</td></tr>
<tr style="background-color: sienna; color: white; text-shadow: darkslategray 0px 1px 0px;"><th style="text-align: center;">CladeName</th><th style="text-align: center;">Count</th></tr>
<tr style="font-size: 90%;"><td> Clade2:188T</td><td style="text-align: center;">01</td></tr>
</tbody></table>
<br />
<b><span style="font-size: x-large;"><span style="color: #274e13;">HA</span> Polymorphisms</span></b><br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI475776"></a><o:p></o:p></div>
<div class="c">
. . . . Brazil<a href="http://genewurx.com/data/map/2013_10_02_Brazil_Map.html" target="_blank">SaoPaulo</a>55023_53F_2013_07_10_<b><span style="color: #660000;">VxX</span></b>_s (<br />
. . . . . . . . A/Sao Paulo/55023/2013</div>
<div class="c">
. . . . . . . . <b><span style="color: red;">Vaccinated 2013</span></b></div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/475776" target="_blank">EPI475776</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/148145" target="_blank">EPI_ISL_148145</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (9 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn42G (GGt),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . syn165S (AGt),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue; font-size: large;">166Q</span></b>,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn318A (GCa),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn383N (AAc),</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <span style="color: blue; font-size: large;"><b>482I</b></span>,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn537S (AGc))</div>
<br />
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<br />
<br />
<div style="text-align: center;">
<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> Segment elucidated at 2013-10-04-09_29_00_087350 by GeneWurx see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 GeneWurx.com, All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-88262439093776777012013-09-26T03:12:00.000-05:002014-01-20T15:51:45.096-06:00Emergent H7N9 Homology in Fatal Human pH1N1 Case Near Caspian Sea<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_09_01_Russia_Citation.xls" target="_blank"><span style="font-size: x-small;"><em>Excel</em></span></a><span style="font-size: x-small;"><em> workbook for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-09-26<br />
Last Update : 2013-11-04</span><br />
<span style="font-size: small;"><br /></span>
<br />
<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"><tbody>
<tr><td style="text-align: center;"><span style="margin-left: auto; margin-right: auto;"><a href="http://genewurx.com/data/map/2013_09_01_Russia_f_map.html" target="_blank"><img alt="Emergent H7N9 Homology in Fatal Human pH1N1 Case Near Caspian Sea" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEglu7vzjEnBA8HZ8q9bwlxWuHC-2qJVxnEoJtnsrfQ201HzJzJqshFb4OMuG6qgbVKu00vEBEtvj85KUgKUaFN7nwEkZbGdrdY1J30d19cA0-okXFpyWiL1OyGfO1zyC88D2VPgsFNzWjQ/s1600/map_tb.jpg" title="Interactive Google Map" /></a></span></td></tr>
<tr><td class="tr-caption" style="text-align: center;"><a href="http://genewurx.com/data/map/2013_09_01_Russia_f_map.html" target="_blank">Geographic Distribution</a></td></tr>
</tbody></table>
<br />
On 2013-09-25, the <span style="color: #783f04;"><b>Rospotrebnadzor of Moscow, Russia</b></span> released a set of human <strong><span style="color: #4c1130;">pH1N1</span></strong> sequences without age or gender at <strong>GISAID,</strong> including 6 <b><span style="color: #783f04;">Fatal</span></b> cases. The <b><span style="color: #274e13;">Neuraminidase</span></b> segments were not released.<br />
<br />
One <b><span style="color: #274e13;">HA </span></b>segment sampled in late January 2013 from <b>Astrakhan</b> [<a href="http://genewurx.com/data/map/2013_09_01_Russia_f_map.html" target="_blank">map</a>], near the Caspian Sea, [<a href="http://pf11.blogspot.com/2013/09/emergent-h7n9-homology-in-fatal-human.html#EPI471830" target="_blank">EPI471830</a>] strongly suggests <span style="color: #660000; font-size: large;"><b>Emergent H7N9</b></span> involvement. This <b>Astrakhan</b><b style="font-size: 16px;"> </b><b style="color: #660000; font-size: x-large;">H7N9</b>-related viral <b><span style="color: #274e13;">Hemagglutinin</span></b> displays a <b><span style="color: orange;">standard</span></b> <span style="color: #660000; font-size: large;"><b>Emergent H7N9</b></span> amino at <b><span style="color: blue;">179V</span></b> on a <strong><span style="color: #4c1130;">pH1N1</span></strong> <b><span style="color: blue;">Clade2:188T</span></b> background. The <b><span style="color: #274e13;">HA </span></b><b><span style="color: blue;">179V </span></b>is <b><span style="color: #660000;">Novel</span></b> to <strong><span style="color: #4c1130;">pH1N1 </span></strong>after more than 4 years of <strong><span style="color: #4c1130;">pH1N1 </span></strong>circulation in humans. <b><span style="color: #274e13;">HA </span></b><b><span style="color: blue;">89G, </span></b>found in the <b style="color: #660000; font-size: x-large;">H7N9</b> reservoir, is co-located on this same <strong><span style="color: #4c1130;">pH1N1 </span></strong>sequence. Polymorphisms at two antigenic amino positions practically adjacent, <b><span style="color: #274e13;">HA </span></b><b><span style="color: blue;">129Q </span></b>and <b><span style="color: #274e13;">HA </span></b><b><span style="color: blue;">131L</span></b>, provide grist for the <b><span style="color: #783f04;">Host-Transition</span></b> mill. <br />
<br />
Contemporary <a href="http://pf11.blogspot.com/2013/03/high-cfr-clade1upsilon-markers-cross-to.html" target="_blank">sequences</a> from Spain carry homology as well as an unusual change adjacent to these odd <b><span style="color: blue;">aa129</span></b> and <b><span style="color: blue;">aa131</span></b> positions from the Russian Federation:<br />
<ul>
<li><b><span style="color: #274e13;">HA</span><span style="color: blue;"> 477M</span> SpainCatalonia5925S_29F_2013_02_05</b></li>
<li><b><span style="color: #274e13;">HA</span><span style="color: blue;"> 132S</span> SpainMurcia164_80F_2013_01_30_s</b></li>
</ul>
Furthermore, <b>SpainMurcia164_80F_2013_01_30_s</b>, an In-Patient case, is on a <b><span style="color: #783f04;">cross-clade</span></b> background (<b><span style="color: #274e13;">HA</span><span style="color: blue;"> 188T </span>&<span style="color: blue;"> 189T</span></b>) and features a polymorphism at aa89 (<b><span style="color: #274e13;">HA</span><span style="color: blue;"> 89N</span></b>)<br />
<br />
<b><span style="color: #274e13;">HA </span></b><b><span style="color: blue;">219T, </span></b>also seen in the <b style="color: #660000; font-size: x-large;">H7N9</b> reservoir, is demonstrated in Kazan [<a href="http://genewurx.com/data/map/2013_09_01_Russia_f_map.html" target="_blank">map</a>], [<a href="http://pf11.blogspot.com/2013/09/emergent-h7n9-homology-in-fatal-human.html#EPI471827" target="_blank">EPI471827</a>].<br />
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<b><span style="color: #274e13;">HA </span></b><b><span style="color: blue;">225G </span></b>continues to inform <b><span style="color: #783f04;">Fatal</span></b> <strong><span style="color: #4c1130;">pH1N1 </span></strong>cases:<br />
<ul>
<li><a href="http://pf11.blogspot.com/2013/09/emergent-h7n9-homology-in-fatal-human.html#EPI471832" target="_blank">EPI471832</a> Volgograd </li>
<li><a href="http://pf11.blogspot.com/2013/09/emergent-h7n9-homology-in-fatal-human.html#EPI471828" target="_blank">EPI471828</a> Moscow </li>
</ul>
<b><span style="color: #274e13; font-size: x-large;">Hemagglutinin Sequences</span></b><br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI471832"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaVolgogradCRIE25_2013_02_28_<b><span style="color: #660000;">VxX</span></b>_f (<br />
. . . . . . . . A/Volgograd/CRIE-25/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/471832" target="_blank">EPI471832</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/146874" target="_blank">EPI_ISL_146874</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . syn99I (ATa),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . <b><span style="color: #660000;">225G</span></b>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn461K (AAa),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn546L (tTg),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI471833"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaOrenburgCRIE26_2013_02_13_f (<br />
. . . . . . . . A/Orenburg/CRIE-26/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/471833" target="_blank">EPI471833</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/146875" target="_blank">EPI_ISL_146875</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (8 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn61A (GCa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 166I,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn417G (GGc),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn542S (TCc),</div>
<div class="c">
. . . . . . . . syn546L (tTg),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI471831"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaAstrakhanCRIE18_2013_02_05_f (<br />
. . . . . . . . A/Astrakhan/CRIE-18/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/471831" target="_blank">EPI471831</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/146873" target="_blank">EPI_ISL_146873</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (8 Amino and 12 Silent)</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 166I,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn542S (TCc),</div>
<div class="c">
. . . . . . . . syn546L (tTg),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI471830"></a><o:p></o:p></div>
<div class="c">
. . . . Russia<a href="http://genewurx.com/data/map/2013_09_01_Russia_f_map.html" target="_blank">Astrakhan</a>CRIE17_2013_01_28_f (<br />
. . . . . . . . A/Astrakhan/CRIE-17/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/471830" target="_blank">EPI471830</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/146872" target="_blank">EPI_ISL_146872</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (13 Amino and 10 Silent)</div>
<div class="c">
. . . . . . . . syn16T (ACg),</div>
<div class="c">
. . . . . . . . 77I [avH1N1],</div>
<div class="c">
. . . . . . . . <span style="color: #660000; font-size: large;"><b>89G</b></span> [<span style="color: #660000; font-size: large;"><b>H7N9 wt</b></span>],</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . <b>129Q</b>,</div>
<div class="c">
. . . . . . . . <b>131L</b>,</div>
<div class="c">
. . . . . . . . syn162P (CCt),</div>
<div class="c">
. . . . . . . . <span style="color: #660000; font-size: large;"><b>179V</b></span> [<b><span style="color: #783f04;">pH1N1</span></b> <b><span style="color: #660000;">Novel</span></b>],</div>
<div class="c">
. . . . . . . . . . . . [<b><span style="color: #660000; font-size: large;">Emergent H7N9 wt</span></b>],</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">477M</span></b> [<b>SpainCatalonia5925S_29F_2013_02_05</b> (<a href="http://pf11.blogspot.com/2013/03/high-cfr-clade1upsilon-markers-cross-to.html" target="_blank">PhyloTree</a>)],<br />
. . . . . . . . . . . . [sH1N1],</div>
<div class="c">
. . . . . . . . syn497K (AAg),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn546L (tTg),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI471828"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaMoscowOblastCRIE08_2013_01_28_<b><span style="color: #660000;">VxX</span></b>_f (<br />
. . . . . . . . A/Moscow-Oblast/CRIE-08/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/471828" target="_blank">EPI471828</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/146870" target="_blank">EPI_ISL_146870</a></div>
<div class="c">
. . . . . . . . 23 Polymorphisms (8 Amino and 15 Silent)</div>
<div class="c">
. . . . . . . . syn64I (ATt),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn111V (GTa),</div>
<div class="c">
. . . . . . . . syn141H (CAc),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . syn223V (GTa),</div>
<div class="c">
. . . . . . . . <b><span style="color: #660000;">225G</span></b>,</div>
<div class="c">
. . . . . . . . 259T,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn402H (CAt),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn542S (TCc),</div>
<div class="c">
. . . . . . . . syn546L (tTg),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI471829"></a><o:p></o:p></div>
<div class="c">
. . . . RussiaAstrakhanCRIE16_2013_01_26_f (<br />
. . . . . . . . A/Astrakhan/CRIE-16/2013</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/471829" target="_blank">EPI471829</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/146871" target="_blank">EPI_ISL_146871</a></div>
<div class="c">
. . . . . . . . 20 Polymorphisms (9 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn16T (ACg),</div>
<div class="c">
. . . . . . . . 77I,</div>
<div class="c">
. . . . . . . . 89G,</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . syn497K (AAg),</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn542S (TCc),</div>
<div class="c">
. . . . . . . . syn546L (tTg),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<div class="c">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI471827"></a><o:p></o:p></div>
<div class="c">
. . . . Russia<a href="http://genewurx.com/data/map/2013_09_01_Russia_f_map.html" target="_blank">Kazan</a>CRIE01_2012_12_29 (<br />
. . . . . . . . A/Kazan/CRIE-01/2012</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/471827" target="_blank">EPI471827</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/146869" target="_blank">EPI_ISL_146869</a></div>
<div class="c">
. . . . . . . . 21 Polymorphisms (8 Amino and 13 Silent)</div>
<div class="c">
. . . . . . . . syn39K (AAa),</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . 188T,</div>
<div class="c">
. . . . . . . . 219T [<b style="color: #660000; font-size: x-large;">H7N9</b>],</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . syn239P (CCa),</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K,</div>
<div class="c">
. . . . . . . . syn542S (TCc),</div>
<div class="c">
. . . . . . . . syn546L (tTg),</div>
<div class="c">
. . . . . . . . syn548C (TGc))</div>
<br />
This analysis catalysed with <strong><span style="color: #783f04;">ingenuity</span></strong> from 2 lead Professors of <strong><span style="color: #783f04;">Group10</span></strong> at <strong><span style="color: #783f04;">Ion</span><sub>203</sub></strong>. We never cease to find inspiration in your halls of instruction.<br />
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<div style="text-align: center;">
<span style="font-size: x-small;"><em>pH1N1 Influenza <b><span style="color: #274e13;">Hemagglutinin</span></b> Segments elucidated at 2013-09-26-00_39_36_150170 by GeneWurx see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
<span style="font-size: x-small;"><i>Publication Copyright 2007-2013 GeneWurx.com, All Rights Reserved.</i></span></div>
<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-91614526291052807922013-04-05T08:57:00.000-05:002013-04-05T08:57:51.344-05:00Sweden Deposits Triple-Claded Virus, TamiFlu-Resistant Via Two Effectors<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2013_04_05_Sweden_Citation.pdf" target="_blank"><span style="font-size: x-small;"><em>PDF</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-04-05<br />
Last Update : 2013-04-05</span><br />
<br />
On 2013-04-05, the <strong><span style="color: #783f04;">Swedish Institute for Infectious Disease Control</span></strong> released a human <strong><span style="color: #4c1130;">pH1N1</span></strong> sequence at <strong>GISAID</strong> from an immunocompromised child. The viral <b><span style="color: #274e13;">Hemagglutinin</span></b> displays extreme CladeCrossing tendencies adding <b><span style="color: blue;">186P</span></b> and <b><span style="color: blue;">189T</span></b> to a recently emergent <b><span style="color: blue;">Clade2:188T</span></b> background. <b><span style="color: #660000;">TamiFlu Resistance</span></b> is delineated by two markers, <b><span style="color: #274e13;">NA</span></b> <b><span style="color: blue;">247N</span></b> and <b><span style="color: blue;">275Y</span></b>.<br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="EPI440476"></a></div>
<div class="c">
. . . . SwedenUppsala4_4M_2013_04_01_TmX (</div>
<div class="c">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/440476" target="_blank">EPI440476</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138979" target="_blank">EPI_ISL_138979</a></div>
<div class="c">
. . . . . . . . 22 Polymorphisms (11 Amino and 11 Silent)</div>
<div class="c">
. . . . . . . . syn#4Y (TAc),</div>
<div class="c">
. . . . . . . . syn71E (GAg),</div>
<div class="c">
. . . . . . . . 75A,</div>
<div class="c">
. . . . . . . . syn77S (AGt),</div>
<div class="c">
. . . . . . . . 100N,</div>
<div class="c">
. . . . . . . . 176I,</div>
<div class="c">
. . . . . . . . syn179L (CTg),</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">186P</span></b>,</div>
<div class="c">
. . . . . . . . <span style="color: blue;"><b>188T</b></span>,</div>
<div class="c">
. . . . . . . . <span style="color: blue;"><b>189T</b></span>,</div>
<div class="c">
. . . . . . . . 237I,</div>
<div class="c">
. . . . . . . . 286E,</div>
<div class="c">
. . . . . . . . syn296Q (CAa),</div>
<div class="c">
. . . . . . . . syn308K (AAg),</div>
<div class="c">
. . . . . . . . syn333F (TTc),</div>
<div class="c">
. . . . . . . . syn338G (GGc),</div>
<div class="c">
. . . . . . . . syn372Q (CAa),</div>
<div class="c">
. . . . . . . . 377K,</div>
<div class="c">
. . . . . . . . syn396V (GTg),</div>
<div class="c">
. . . . . . . . syn448L (TTg),</div>
<div class="c">
. . . . . . . . 454N,</div>
<div class="c">
. . . . . . . . 502K)</div>
<div class="a">
<br /></div>
<div class="a">
<a href="http://www.blogger.com/" name="EPI440477"></a></div>
<div class="c">
. . . . SwedenUppsala4_4M_2013_04_01_TmX (</div>
<div class="c">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/440477" target="_blank">EPI440477</a></div>
<div class="c">
. . . . . . . . GISAID Isolate <a href="http://gisaid.org/EPI_ISL/138979" target="_blank">EPI_ISL_138979</a></div>
<div class="c">
. . . . . . . . 18 Polymorphisms (10 Amino and 8 Silent)</div>
<div class="c">
. . . . . . . . 44S,</div>
<div class="c">
. . . . . . . . 80M,</div>
<div class="c">
. . . . . . . . 106V,</div>
<div class="c">
. . . . . . . . syn176S (TCg),</div>
<div class="c">
. . . . . . . . 200S,</div>
<div class="c">
. . . . . . . . syn204A (GCg),</div>
<div class="c">
. . . . . . . . syn205V (GTa),</div>
<div class="c">
. . . . . . . . syn209N (AAt),</div>
<div class="c">
. . . . . . . . syn240T (ACc),</div>
<div class="c">
. . . . . . . . 241I,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">247N</span></b>,</div>
<div class="c">
. . . . . . . . <b><span style="color: blue;">275Y</span></b>,</div>
<div class="c">
. . . . . . . . syn310L (tTG),</div>
<div class="c">
. . . . . . . . 369K,</div>
<div class="c">
. . . . . . . . syn377P (CCa),</div>
<div class="c">
. . . . . . . . syn378N (AAt),</div>
<div class="c">
. . . . . . . . 448I,</div>
<div class="c">
. . . . . . . . 452I)</div>
<br />
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<span style="font-size: x-small;"><em>pH1N1 Influenza Hemagglutinin & Neuraminidase Segments elucidated at </em></span><span style="font-family: "Calibri","sans-serif"; font-size: 11.0pt; line-height: 115%; mso-ansi-language: EN-US; mso-ascii-theme-font: minor-latin; mso-bidi-font-family: "Times New Roman"; mso-bidi-language: AR-SA; mso-bidi-theme-font: minor-bidi; mso-fareast-font-family: Calibri; mso-fareast-language: EN-US; mso-fareast-theme-font: minor-latin; mso-hansi-theme-font: minor-latin;">2013-04-05-08_09_08_355700 </span><span style="font-size: x-small;"><em>by GeneWurx see.PolyDetector v0, Copyright 2007-2013. </em></span>
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<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-58312192979000075942013-03-04T21:22:00.002-06:002014-01-20T15:50:54.751-06:00High-CFR Clade1.Upsilon Markers Cross to pH1N1.Clade2 on 70% of Spain's Recent pH1N1 Hospitalisations<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GIS_2013_03_01_Spain_ack.pdf" target="_blank"><span style="font-size: x-small;"><em>PDF</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2013-03-04<br />
Last Update : 2013-03-08</span><br />
<br />
The most <b><span style="color: #783f04;">widespread</span></b> <b><span style="color: #4c1130;">Pandemic Influenza H1N1</span></b> clade is
actively inheriting <i><span style="color: #660000;"><b>virulence factors</b></span></i> from the <b><span style="color: #783f04;">most dangerous</span></b>
sub-clade (<b><span style="color: #4c1130;">Upsilon</span></b> with a <b><span style="color: #660000;">minimum</span></b> 5% Fatality Rate). Friday’s genetic
sequences from Spain confirmed our predictions of <b><span style="color: #783f04;">further <a href="http://pf11.blogspot.com/2011/06/189t-upsilon-in-czech-republic-ha.html" target="_blank">spread</a></span></b> from the
<a href="http://pf11.blogspot.com/2011/12/avian-homology-on-high-diversity.html#HighCFR" target="_blank">highest fatality</a> sub-clade <a href="http://pf11.blogspot.com/2011/09/upsilon-marker-jumps-clades-adds.html" target="_blank">onto the widest</a> circulating strain. This batch
of sequences also shows significant inclusion of antigen donations at the nucleotide level
from recent <b><span style="color: #660000;">H5N1 Avian Influenza</span></b>.
<br />
<br />
Spain’s 2013-03-01 <b>GISAID</b> <b><span style="color: #4c1130;">pH1N1</span></b> deposit of 17 <span style="color: #274e13;"><b>HA</b></span> Fragments and 3 <span style="color: #274e13;"><b>NA</b></span> Fragments from 2013 cases carries <b><span style="color: #783f04;">258 polymorphisms</span></b> from the <b><span style="color: #4c1130;">pH1N1</span></b> Origin Reference. <b><span style="color: #783f04;">61 Distinct</span></b> Polymorphisms appear among the <b><span style="color: #274e13;">HA</span></b> fragments and <b><span style="color: #783f04;">15</span></b> across the <span style="color: #274e13;"><b>NA</b></span> fragments. All sequences are on a <b><span style="color: #4c1130;">Clade2:188T</span></b> background. <br />
<br />
Five of the seven <i><b><span style="color: #660000;">severe cases</span></b></i> (<b>70%</b>) involve Clade Crossing with <b><span style="color: #4c1130;">Clade1.Upsilon</span></b>, (<strong><span style="color: #4c1130;">pH1N1</span><span style="color: #660000;"><sub>υ</sub></span></strong>). Four of the seven <b><span style="color: #660000;">severe</span></b> cases demonstrate antigenic variation. Twelve of the seventeen <b><span style="color: #4c1130;">Clade2:188T</span></b> <b><span style="color: #274e13;">HA</span></b> fragments carry <strong><span style="color: #4c1130;">pH1N1</span><span style="color: #660000;"><sub>υ</sub></span></strong> polymorphisms, a significant rate of Clade Crossing. <b style="color: #783f04;">60% </b>of the <b><span style="color: #274e13;">NA</span></b> Polymorphisms from this deposit are found within the <strong><span style="color: #4c1130;">pH1N1</span><span style="color: #660000;"><sub>υ</sub></span></strong> <b><span style="color: #274e13;">NA </span></b>subset.<br />
<ul>
<li><b><span style="color: #274e13;">Hemagglutinin</span></b> – Average 13.0 polymorphisms Per <b>Fragment</b></li>
<li><b><span style="color: #274e13;">Neuraminidase</span></b> – Average 12.3 polymorphisms Per <b>Fragment</b></li>
</ul>
<div class="a">
<a href="http://www.blogger.com/" name="futurestate"></a><o:p></o:p></div>
<b><span style="color: #783f04;">Hypermorphic</span></b> behaviour with a tendency toward homology with <b><span style="color: #660000;">H5N1</span></b> and <b><span style="color: #783f04;">Avian H1N1</span></b> continues to be present in the development toward a <a href="http://pf11.blogspot.com/2009/08/introduction-to-pf11.html" target="_blank">future state</a> of <b><span style="color: #4c1130;">Pandemic H1N1 Omega</span></b> (<strong><span style="color: #4c1130; font-size: large;">pH1N1<sub>Ω</sub></span></strong>) as demonstrated in <b><span style="color: #783f04;">SpainCatalonia5925S_29F_2013_02_05</span></b> [<a href="http://pf11.blogspot.com/2013/03/high-cfr-clade1upsilon-markers-cross-to.html#EPI427227">EPI427227</a>] from a 29 year old female with <b><span style="color: #783f04;">36 combined polymorphisms</span></b> (22 <b><span style="color: #274e13;">HA</span></b> / 14 <b><span style="color: #274e13;">NA</span></b>) though both gene segments are <b><span style="color: #783f04;">fragments</span></b>.<br />
<br />
<div class="a">
<a href="http://www.blogger.com/" name="PhyloTree"></a><o:p></o:p></div>
Please refer to the <strong><span style="color: #783f04;">GeneWurx</span></strong> <b><span style="color: #783f04;">PolyPlus</span></b> <a href="http://genewurx.com/data/GeneWurx_PhyloTree_2013_03_01_Spain.pdf" target="_blank">PhyloGenetic</a> tree for a rapid assessment of details concerning sequence relationships, passage history, <b><i>age, gender, clinical outcome</i></b> and individual polymorphisms (amino and 'silent').<br />
<br />
The <b><span style="color: #783f04;">SpainGalicia207_M_6mF_2013_01_25_s</span></b> [<a href="http://pf11.blogspot.com/2013/03/high-cfr-clade1upsilon-markers-cross-to.html#EPI427246">EPI427246</a>] disease that
<b><span style="color: #783f04;">hospitalised</span></b> a <b><i>6 month old baby</i></b> girl at the end of January
carries an <b><span style="color: #274e13;">HA</span></b> <b><span style="color: blue;">166N</span></b> change that we have <a href="http://pf11.blogspot.com/2013/02/ha-166n-polymorphism-potential-on-ph1n1.html" target="_blank">predicted</a> to translate onto a
lower branch of the tree that is annotated with ‘<b><span style="color: blue;">75A, 176I, 189T</span></b>’. Further
<b><span style="color: #660000;">severity is expected</span></b> in babies and young children infected with the predicted
strain.<br />
<div align="center">
<a href="http://genewurx.com/data/GeneWurx_PhyloTree_2013_03_01_Spain.pdf" target="_blank" title="High-CFR Clade1.Upsilon Markers Cross to pH1N1.Clade2 on 70% of Spain's Recent pH1N1 Hospitalisations"><br />
<img border="0" class="center" src="http://genewurx.com/data/GeneWurx_SpainTbNail.jpg" /></a>
</div>
<br />
<span style="font-size: x-large;"><b><span style="color: #274e13;">HA</span></b> and <b><span style="color: #274e13;">NA</span></b> Polymorphisms by Sequence</span><br />
<br />
<br />
<div class="b">
. . . . SpainCatalonia2076930NS_59M_2013_02_18 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427229" target="_blank">EPI427229</a></div>
<div class="b">
. . . . . . . . 18 Polymorphisms (8 Amino and 10 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa11,</div>
<div class="b">
. . . . . . . . syn39K (AAa),</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div>
. . . . . . . . 144T [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . syn239P (CCa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . syn372Q (CAa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 377K,</div>
<div class="b">
. . . . . . . . syn396V (GTg),</div>
<div class="b">
. . . . . . . . syn448L (TTg),</div>
<div class="b">
. . . . . . . . 454N,</div>
<div class="b">
. . . . . . . . 502K [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . HA Truncated after aa541)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainCatalonia2076930NS_59M_2013_02_18 (</div>
<div class="b">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/427230" target="_blank">EPI427230</a></div>
<div class="b">
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)</div>
<div class="b">
. . . . . . . . NA Truncated before aa35,</div>
<div class="b">
. . . . . . . . 44S,</div>
<div class="b">
. . . . . . . . 52N,</div>
<div class="b">
. . . . . . . . 106V,</div>
<div class="b">
. . . . . . . . syn176S (TCg),</div>
<div class="b">
. . . . . . . . 200S,</div>
<div class="b">
. . . . . . . . syn205V (GTa),</div>
<div class="b">
. . . . . . . . syn209N (AAt),</div>
<div class="b">
. . . . . . . . syn240T (ACc),</div>
<div class="b">
. . . . . . . . 241I,</div>
<div class="b">
. . . . . . . . 369K,</div>
<div class="b">
. . . . . . . . syn377P (CCa),</div>
<div class="b">
. . . . . . . . syn378N (AAt),</div>
<div class="b">
. . . . . . . . NA Truncated after aa465)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainMadrid196_70F_2013_02_05_s (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427247" target="_blank">EPI427247</a></div>
<div class="b">
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="b">
. . . . . . . . syn16T (ACg),</div>
<div class="b">
. . . . . . . . syn55L (TTa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn162P (CCt),</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa342)</div>
<div class="b">
<br /></div>
<a href="http://www.blogger.com/" name="EPI427227"></a>
<br />
<div class="b">
. . . . SpainCatalonia5925S_29F_2013_02_05 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427227" target="_blank">EPI427227</a></div>
<div class="b">
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa11,</div>
<div class="b">
. . . . . . . . syn39K (AAa) [avH7, avH10],</div>
<div class="b">
. . . . . . . . syn77S (AGt) [avH1N1, H5N1 syn],</div>
<div class="b">
. . . . . . . . 100N [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn158G (GGg) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn179L (CTg) [H5N1],</div>
<div class="b">
. . . . . . . . 188T [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn215P (CCa) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . 237I [avH1N1, H5N1 LookAside<sub>upstream</sub> wt, H10],</div>
<div class="b">
. . . . . . . . syn239P (CCa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 286E [H6N1],</div>
<div class="b">
. . . . . . . . syn308K (AAg) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn333F (TTc) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn337A (GCt) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong> syn],</div>
<div class="b">
. . . . . . . . syn338G (GGc) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn372Q (CAa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 377K [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn396V (GTg) [avH1N1, H5N1 syn],</div>
<div class="b">
. . . . . . . . syn417G (GGg) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn448L (TTg) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 454N [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . <b><span style="color: blue;">477M</span></b> [<b><span style="color: #4c1130;">pH1N1 avian</span></b>],</div>
<div class="b">
. . . . . . . . 502K [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . HA Truncated after aa508)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainCatalonia5925S_29F_2013_02_05 (</div>
<div class="b">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/427228" target="_blank">EPI427228</a></div>
<div class="b">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="b">
. . . . . . . . NA Truncated before aa35,</div>
<div class="b">
. . . . . . . . 44S [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 106V [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn176S (TCg) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 200S [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn205V (GTa) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn209N (AAt) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn228E (GAa) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn240T (ACc) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 241I [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn264V (GTt) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . 369K [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn377P (CCa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn378N (AAt) [avH1N1, H5N1],</div>
<div class="b">
. . . . . . . . syn393I (ATt) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . NA Truncated after aa462)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainNavarra193_15F_2013_02_04 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427248" target="_blank">EPI427248</a></div>
<div class="b">
. . . . . . . . 13 Polymorphisms (7 Amino and 6 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa#10,</div>
<div class="b">
. . . . . . . . syn#4Y (TAc),</div>
<div class="b">
. . . . . . . . 75A,</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . 176I,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 189T [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa345)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainMurcia165_39F_2013_01_30_s (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427252" target="_blank">EPI427252</a></div>
<div class="b">
. . . . . . . . 13 Polymorphisms (8 Amino and 5 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa27,</div>
<div class="b">
. . . . . . . . 75A,</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 89N,</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . 176I,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 189T [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa344)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainMurcia164_80F_2013_01_30_s (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427242" target="_blank">EPI427242</a></div>
<div class="b">
. . . . . . . . 14 Polymorphisms (9 Amino and 5 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa3,</div>
<div class="b">
. . . . . . . . 75A,</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 89N,</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . 132S,</div>
<div class="b">
. . . . . . . . 176I,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 189T [<strong><span c1130="">p<span style="color: #4c1130;">H1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa346)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainPaisVasco187_M_42F_2013_01_29 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427251" target="_blank">EPI427251</a></div>
<div class="b">
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa#9,</div>
<div class="b">
. . . . . . . . syn#4Y (TAc),</div>
<div class="b">
. . . . . . . . syn39K (AAa),</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . syn239P (CCa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa344)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainPaisVasco185_M_38M_2013_01_29 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427250" target="_blank">EPI427250</a></div>
<div class="b">
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa1,</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn140P (CCc),</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa344)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainGalicia208_5M_2013_01_29_s (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427245" target="_blank">EPI427245</a></div>
<div class="b">
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa27,</div>
<div class="b">
. . . . . . . . syn39K (AAa),</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . syn239P (CCa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn329S (TCc) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa346)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainBaleares168_58M_2013_01_29_s (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427244" target="_blank">EPI427244</a></div>
<div class="b">
. . . . . . . . 11 Polymorphisms (4 Amino and 7 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa5,</div>
<div class="b">
. . . . . . . . syn16T (ACg),</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn162P (CCt),</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa346)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainPaisVasco184_M_4mM_2013_01_28 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427249" target="_blank">EPI427249</a></div>
<div class="b">
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa1,</div>
<div class="b">
. . . . . . . . syn64I (ATa),</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa344)</div>
<div class="b">
<br /></div>
<a href="http://www.blogger.com/" name="EPI427246"></a>
<br />
<div class="b">
. . . . SpainGalicia207_M_6mF_2013_01_25_s (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427246" target="_blank">EPI427246</a></div>
<div class="b">
. . . . . . . . 15 Polymorphisms (5 Amino and 10 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="b">
. . . . . . . . syn34N (AAt),</div>
<div class="b">
. . . . . . . . syn53L (TTa),</div>
<div class="b">
. . . . . . . . syn56G (GGa),</div>
<div class="b">
. . . . . . . . 146G,</div>
<div class="b">
. . . . . . . . syn150N (AAc),</div>
<div class="b">
. . . . . . . . 166N,</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . syn190D (GAt),</div>
<div class="b">
. . . . . . . . syn196Q (CAa),</div>
<div class="b">
. . . . . . . . 200T,</div>
<div class="b">
. . . . . . . . syn236L (CTg),</div>
<div class="b">
. . . . . . . . 274T,</div>
<div class="b">
. . . . . . . . syn293L (CTa),</div>
<div class="b">
. . . . . . . . syn309Y (TAc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa346)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainBaleares167_3M_2013_01_25 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427243" target="_blank">EPI427243</a></div>
<div class="b">
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa#3,</div>
<div class="b">
. . . . . . . . syn39K (AAa),</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . syn212K (AAa),</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . syn239P (CCa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa344)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainBaleares167_3M_2013_01_25 (</div>
<div class="b">
. . . . . . . . GISAID NA <a href="http://gisaid.org/EPI/427285" target="_blank">EPI427285</a></div>
<div class="b">
. . . . . . . . 11 Polymorphisms (5 Amino and 6 Silent)</div>
<div class="b">
. . . . . . . . 44S,</div>
<div class="b">
. . . . . . . . 106V,</div>
<div class="b">
. . . . . . . . syn176S (TCg),</div>
<div class="b">
. . . . . . . . 200S,</div>
<div class="b">
. . . . . . . . syn205V (GTa),</div>
<div class="b">
. . . . . . . . syn209N (AAt),</div>
<div class="b">
. . . . . . . . syn240T (ACc),</div>
<div class="b">
. . . . . . . . 241I,</div>
<div class="b">
. . . . . . . . 369K,</div>
<div class="b">
. . . . . . . . syn377P (CCa),</div>
<div class="b">
. . . . . . . . syn378N (AAt),</div>
<div class="b">
. . . . . . . . NA Truncated after aa462)</div>
<div class="b">
<br /></div>
<a href="http://www.blogger.com/" name="EPI427241"></a>
<br />
<div class="b">
. . . . SpainPaisVasco132_M_62F_2013_01_19_s (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427241" target="_blank">EPI427241</a></div>
<div class="b">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa6,</div>
<div class="b">
. . . . . . . . syn34N (AAt),</div>
<div class="b">
. . . . . . . . 87G,</div>
<div class="b">
. . . . . . . . syn104L (tTA) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong> syn],</div>
<div class="b">
. . . . . . . . syn122K (AAa),</div>
<div class="b">
. . . . . . . . syn127P (CCa),</div>
<div class="b">
. . . . . . . . 146G,</div>
<div class="b">
. . . . . . . . 166I,</div>
<div class="b">
. . . . . . . . syn171D (GAc),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 200T,</div>
<div class="b">
. . . . . . . . syn258F (TTt),</div>
<div class="b">
. . . . . . . . syn275V (GTt) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn337A (GCt) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong> syn],</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa342)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainPaisVasco138_M_3mM_2013_01_18 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427240" target="_blank">EPI427240</a></div>
<div class="b">
. . . . . . . . 14 Polymorphisms (5 Amino and 9 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa7,</div>
<div class="b">
. . . . . . . . syn34N (AAt),</div>
<div class="b">
. . . . . . . . 87G,</div>
<div class="b">
. . . . . . . . syn122K (AAa),</div>
<div class="b">
. . . . . . . . syn127P (CCa),</div>
<div class="b">
. . . . . . . . 146G,</div>
<div class="b">
. . . . . . . . 166I,</div>
<div class="b">
. . . . . . . . syn171D (GAc),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 200T,</div>
<div class="b">
. . . . . . . . syn252V (GTa) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn258F (TTt),</div>
<div class="b">
. . . . . . . . syn275V (GTt) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong>],</div>
<div class="b">
. . . . . . . . syn337A (GCt) [<strong><span style="color: #4c1130;"><span c1130="">pH1N1</span></span></strong><strong><span style="color: #660000;"><sub>υ</sub></span></strong> syn],</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa342)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainNavarra108_M_52F_2013_01_14 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427239" target="_blank">EPI427239</a></div>
<div class="b">
. . . . . . . . 11 Polymorphisms (4 Amino and 7 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa#10,</div>
<div class="b">
. . . . . . . . syn#4Y (TAc),</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn136T (ACa),</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . syn308K (AAg),</div>
<div class="b">
. . . . . . . . syn333F (TTc),</div>
<div class="b">
. . . . . . . . syn338G (GGc),</div>
<div class="b">
. . . . . . . . HA Truncated after aa342)</div>
<div class="b">
<br /></div>
<div class="b">
. . . . SpainBaleares100_M_59F_2013_01_14 (</div>
<div class="b">
. . . . . . . . GISAID HA <a href="http://gisaid.org/EPI/427238" target="_blank">EPI427238</a></div>
<div class="b">
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)</div>
<div class="b">
. . . . . . . . HA Truncated before aa2,</div>
<div class="b">
. . . . . . . . syn77S (AGt),</div>
<div class="b">
. . . . . . . . 100N,</div>
<div class="b">
. . . . . . . . syn179L (CTg),</div>
<div class="b">
. . . . . . . . 188T,</div>
<div class="b">
. . . . . . . . 237I,</div>
<div class="b">
. . . . . . . . syn262R (AGg),</div>
<div class="b">
. . . . . . . . 286E,</div>
<div class="b">
. . . . . . . . 289L,</div>
<div class="b">
. . . . . . . . HA Truncated after aa296)</div>
<br />
<br />
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<div style="text-align: center;">
<span style="font-size: x-small;"><em>pH1N1 Influenza Hemagglutinin & Neuraminidase Segments elucidated at 2013-03-01-15_26_05_537900 by GeneWurx see.PolyDetector v0, Copyright 2007-2013. </em></span>
<br />
<span style="font-size: x-small;"><em><br /></em></span>
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<br />NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-18118515667957023732013-02-26T03:39:00.000-06:002013-02-26T03:39:01.444-06:00HA 166N Polymorphism Potential on pH1N1 Cross-Clade Background with Both 188T and 189T<strong><span style="color: #990000;">Current trending</span></strong> indicates a reportable potential for the <strong><span style="color: blue;">K166N</span></strong> polymorphism <strong><span style="color: #783f04;">spreading</span></strong> on the <strong><span style="color: #274e13;">Hemagglutinin</span></strong> of <strong><span style="color: #4c1130;">pH1N1</span></strong>. This change may enhance Vaccine Escape from the currently selected vaccine target candidate, CA/07 X181. <br />
<br />
The <strong><span style="color: #783f04;">GeneWurx</span></strong> <strong><span style="color: #660000;">RnR</span></strong> model approximates that <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">166N</span></strong> may appear on a <strong><span style="color: #4c1130;">pH1N1</span></strong> cross-clade background carrying <b><span style="color: #783f04;">both</span></b> <span style="color: blue;"><b>188T</b></span> and <span style="color: blue;"><b>189T</b></span>, according to the following probabilities.<br />
<br />
<ul>
<li>28% probability sampled by <b>2013-04-30</b>.</li>
<li>52% probability sampled by <b>2013-09-30</b>.</li>
</ul>
If the <b><span style="color: #274e13;">HA</span></b> <span style="color: blue;"><b>166N</b></span> does appear on a cross-clade background having <b><span style="color: #783f04;">both</span></b> <span style="color: blue;"><b>188T</b></span> and <b><span style="color: blue;">189T</span></b>, <b><i><span style="color: #660000;">hospitalisation</span></i></b> of subjects <b><i><span style="color: #660000;">under 12</span></i></b> years of age is a potential scenario.<br />
<br />
These probabilities will be updated as additional data is made public. Transparency at this <strong><em><span style="color: #660000;">post-pandemic</span></em></strong> stage is essential to formulate viable responses for the risk groups. Release of sequences and clinical data of a finer detail and higher quantity will allow information-based decisions.<br />
<br />
<br />
<br />
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NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-38752341785998035492013-02-08T01:36:00.000-06:002013-02-08T02:12:26.099-06:00sH3N2 HA 140K Antigen Polymorphism Potential in Europe and North America<strong><span style="color: #990000;">Current trending</span></strong> indicates a reportable potential for the <strong><span style="color: blue;">I140K</span></strong> polymorphism <strong><span style="color: #783f04;">spreading</span></strong> on the <strong><span style="color: #274e13;">Hemagglutinin</span></strong> of <strong><span style="color: #4c1130;">sH3N2</span></strong>. This <strong><span style="color: #783f04;">Antigenic Domain A</span></strong> change may enhance Vaccine Escape from the currently selected vaccine target, Victoria361 X-217.<br />
<br />
The <strong><span style="color: #783f04;">GeneWurx</span></strong> <strong><span style="color: #660000;">RnR</span></strong> model approximates that <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">I140K</span></strong> will <span style="color: #783f04;"><b>appear</b></span> in <strong><span style="color: #4c1130;">sH3N2</span></strong> Northern Hemisphere Seasons 2012-2013 and 2013-2014 according to the following probabilities.<br />
<br />
<ul>
<li>60% probability <strong><span style="color: #783f04;">in either Europe or North America </span></strong>sampled by 2013-12-31.</li>
<li>38% probability <strong><span style="color: #783f04;">in both Europe and North America </span></strong>sampled by 2013-12-31.</li>
</ul>
<ul>
<li>05% <strong><span style="color: #783f04;">or less</span></strong> probability of <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">140K</span></strong> <strong><span style="color: #783f04;">conserving</span></strong> across <strong><span style="color: #4c1130;">sH3N2</span></strong> by 2013-12-31.</li>
<li>12% <strong><span style="color: #783f04;">or less </span></strong>probability of <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">140K</span></strong> <strong><span style="color: #783f04;">conserving</span></strong> on one <strong><span style="color: blue;">Hydra</span></strong> by 2013-12-31.</li>
</ul>
<br />
These probabilities will be updated as additional data is made public. Transparency at this <strong><em><span style="color: #660000;">High Mortality</span></em></strong> stage is essential to formulate viable responses for the risk groups. Release of sequences and clinical data of a finer detail and higher quantity will allow information-based decisions.<br />
<br />
<br />
<br />
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NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-39901987666461677642011-12-21T22:49:00.064-06:002013-03-08T18:32:53.920-06:00Avian Homology on High Diversity Sequences Distinguished Across Globe<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2011_12_20_NIMR_Citation.xls" target="_blank"><span style="font-size: x-small;"><em>spreadsheet</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<span style="font-size: small;"><br />
Publish Date : 2011-12-21<br />
Last Update : 2012-01-27</span><br />
<br />
On 2011-12-20, the <strong><span style="color: #783f04;">UK National Institute of Medical Research</span></strong> released a group of human <strong><span style="color: #4c1130;">pH1N1</span></strong> sequences at <strong>GISAID</strong> including 46 full <strong><span style="color: #274e13;">HA</span></strong> and 45 full <strong><span style="color: #274e13;">NA</span></strong> segments. The sample dates cover 2010-12-15 to 2011-08-11 (44 during 2011). <strong><span style="color: #783f04;">Fifteen originating labs</span></strong> provided the samples though no specification of clinical outcome is notated within the <strong>NIMR</strong> deposit. The cases produced 968 total polymorphisms on the Hemagglutinin and Neuraminidase gene segments (<strong><span style="color: #274e13;">HA</span></strong> 638 / <strong><span style="color: #274e13;">NA</span></strong> 330) averaging <strong><span style="color: #783f04;">over 20 polymorphisms</span></strong> per full sequence (<strong><span style="color: #274e13;">HA</span></strong> 13.9 / <strong><span style="color: #274e13;">NA</span></strong> 7.3).<br />
<br />
The superset of polymorphisms demonstrates notable non-swine, zoonotic homology according to the <strong><span style="color: #783f04;">GeneWurx Zoonoses Listing (GZL)</span></strong> <a href="http://genewurx.com/data/GeneWurx_GZL_2011_12_20_NIMR_v1.xls" target="_blank">assessment</a> with an <strong><span style="color: #783f04;">85% minimum</span></strong> of the 350 combined distinct <strong><span style="color: #274e13;">HA</span></strong> and <strong><span style="color: #274e13;">NA</span></strong> polymorphisms being found on <strong><span style="color: #783f04;">non-swine, animal</span></strong> sequences (primarily avian). <strong><span style="color: #783f04;">Trans-Zoonotic Serotype Analyses (TZSA)</span></strong>, [<a href="http://genewurx.com/data/genewurx_tzsa_2011_12_20_nimr_ha_v1.xls" target="_blank">HA</a>] / [<a href="http://genewurx.com/data/genewurx_tzsa_2011_12_20_nimr_na_v1.xls" target="_blank">NA</a>], provide the detail beneath the <strong><span style="color: #783f04;">GZL</span></strong>. Additionally, <strong><span style="color: #783f04;">GeneWurx LookAside</span></strong> analysis (Upstream & Downstream Distances of 1 Amino Acid each) demonstrates potential <strong><span style="color: #783f04;">influencer relationships</span></strong> for <strong><span style="color: #741b47;">pH1N1</span></strong> <strong><span style="color: #274e13;">HA</span></strong> polymorphisms that have not yet shown <strong><span style="color: #783f04;">direct</span></strong> <strong><span style="color: #660000;">zoonotic</span></strong> homology.<br />
<br />
The volume and span of the deposit demonstrates the ongoing significant rate of genetic acquisition onto 4 of the established clades, alongside several uncladed sequences. Four sequences carry <strong><span style="color: #783f04;">clade-defining</span></strong> elements from <strong><span style="color: #783f04;">multiple clades</span></strong>. <strong><span style="color: #783f04;">Ambiguity</span></strong> in the traces is high with <strong><span style="color: #783f04;">44 mixed</span></strong> traces, 34 <strong><span style="color: #274e13;">HA</span></strong> and 10 <strong><span style="color: #274e13;">NA</span></strong>. <br />
<br />
A certain population of geographically-dispersed sequences shows a combined <strong><span style="color: #274e13;">HA</span></strong> and <strong><span style="color: #274e13;">NA</span></strong> total of <strong><span style="color: #783f04;">25 or more revisions</span></strong> (10 sequences, 22% of the deposit). This deposit brings the first <strong><span style="color: #4c1130;">pH1N1</span></strong> sequence with a combined <strong><span style="color: #783f04;">40 polymorphisms</span></strong> (<strong><span style="color: #274e13;">HA</span></strong> and <strong><span style="color: #274e13;">NA</span></strong>) on the <strong><span style="color: #660000;">highly avian-influenced</span></strong>, <strong><span style="color: #783f04;">SenegalDakar14_1x_2011_04_14</span></strong> (<strong><span style="color: #274e13;">HA</span></strong> 29 / <strong><span style="color: #274e13;">NA</span></strong> 11) [<a href="http://pf11.blogspot.com/2011/12/avian-homology-on-high-diversity.html#EPI346724">EPI346724</a>]. On that Dakar <strong><span style="color: #274e13;">HA</span></strong>, 23 of 29 polymorphisms <strong><span style="color: #783f04;">(79%)</span></strong> are found within <strong><span style="color: #783f04;">Avian H1N1</span></strong>, while at least <strong><span style="color: #783f04;">90% are identifiable in non-swine</span></strong> zoonotic reservoirs (26 of 29 <strong><span style="color: #274e13;">HA</span></strong>). This single human sequence from a very young child carries 13 amino homologies to <strong><span style="color: #660000;">H5N1</span></strong> (9 <strong><span style="color: #274e13;">HA</span></strong> / 4 <strong><span style="color: #274e13;">NA</span></strong>), 13 to <strong><span style="color: #783f04;">H9N2</span></strong> (9 <strong><span style="color: #274e13;">HA</span></strong> / 4 <strong><span style="color: #274e13;">NA</span></strong>) and 18 to <strong><span style="color: #783f04;">H6N1</span></strong> (10 <strong><span style="color: #274e13;">HA</span></strong> / 8 <strong><span style="color: #274e13;">NA</span></strong>). Dakar homology to <strong><span style="color: #660000;">TamiFlu Resistant</span></strong> strains due to <strong><span style="color: #274e13;">NA</span></strong> <strong><span style="color: blue;">247N</span></strong> is significant with 14 matches (8 <strong><span style="color: #274e13;">HA</span></strong> / 6 <strong><span style="color: #274e13;">NA</span></strong>). <br />
<br />
<a href="http://www.blogger.com/" name="HighCFR"></a>
Enhanced acquisition of <strong><span style="color: #783f04;">avian genetic data</span></strong> and convergence of polymorphisms found on <strong><span style="color: #660000;">High-CFR</span></strong> and highly-zoonotic <strong><span style="color: #4c1130;">pH1N1</span></strong> strains are quantified. Variant clades appear to be gaining data from the same sources as the <strong><span style="color: #4c1130;">pH1N1</span></strong> <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">230I</span></strong> strains (24 <strong><span style="color: #274e13;">HA</span></strong> / 12 <strong><span style="color: #274e13;">NA</span></strong> matches) and the <strong><span style="color: #4c1130;">Upsilon</span></strong> series (31 <strong><span style="color: #274e13;">HA</span></strong> / 23 <strong><span style="color: #274e13;">NA</span></strong> matches) of 84 sequences (<strong><span style="color: #660000;">5.33% CFR</span></strong>). <br />
<br />
Five countries (Cameroon, France, England, Iceland and Hungary) produced a subset of 9 sequences bearing 12 total polymorphisms within the <strong><span style="color: #783f04;">aa156-aa159</span></strong> range, a domain documented to produce <strong><span style="color: #660000;">Vaccine Escape</span></strong>. <strong><span style="color: #783f04;">Hungary7_xM_2011_01_31</span></strong> (<strong><span style="color: #274e13;">HA</span></strong> 11 / <strong><span style="color: #274e13;">NA</span></strong> 06) [<a href="http://pf11.blogspot.com/2011/12/avian-homology-on-high-diversity.html#EPI346709">EPI346709</a>] on <strong><span style="color: blue;">Clade2: 188T</span></strong> with <strong><span style="color: #783f04;">RBS</span></strong> <strong><span style="color: blue;">226R</span></strong> (<strong>Vaccine Match</strong>) applies polymorphic behaviour at 3 consecutive <strong><span style="color: #660000;">Vaccine Escape</span></strong> locations in this domain (<strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">157E</span></strong> mix wt, <strong><span style="color: blue;">158E</span></strong> mix wt and <strong><span style="color: blue;">159D</span></strong> mix wt).<br />
<br />
One sequence is <strong><span style="color: #660000;">TamiFlu Resistant</span></strong> with <strong><span style="color: #274e13;">NA</span></strong> <strong><span style="color: blue;">275Y</span></strong>. More importantly a strong gravity is indicated in the polymorphic pattern suggestive that more <strong><span style="color: #660000;">TmX</span></strong> due to <strong><span style="color: #274e13;">NA</span></strong> <strong><span style="color: blue;">247N</span></strong> will be seen in the future on these types of strains. Considering the <strong><span style="color: #274e13;">HA</span></strong> and <strong><span style="color: #274e13;">NA</span></strong> distinct polymorphic supersets on these human pandemic sequences, 96 (52 <strong><span style="color: #274e13;">HA</span></strong> and 44 <strong><span style="color: #274e13;">NA</span></strong>) changes (27%) appear on earlier pandemic sequences with <strong><span style="color: #660000;">TmX</span></strong> due to <strong><span style="color: #274e13;">NA</span></strong> <strong><span style="color: blue;">247N</span></strong> and 85 (52 <strong><span style="color: #274e13;">HA</span></strong> and 33 <strong><span style="color: #274e13;">NA</span></strong>) changes (24%) appear on the subset of <strong><span style="color: #783f04;">H5N1</span></strong> sequences that carry the <strong><span style="color: #274e13;">NA</span></strong> <strong><span style="color: blue;">247N</span></strong> marker. <br />
<br />
Evaluating the 229 distinct <strong><span style="color: #274e13;">HA</span></strong> changes derived from these 46 human pandemic sequences against fractional <strong><span style="color: #274e13;">HA</span></strong> subsets of several <strong><span style="color: #660000;">animal serotypes</span></strong>, a <strong><span style="color: #783f04;">minimum of 84%</span></strong> <a href="http://genewurx.com/data/GeneWurx_GZL_2011_12_20_NIMR_v1.xls" target="_blank">share homology</a>. <strong><span style="color: #783f04;">Avian H1N1</span></strong> leads the match count at <strong><span style="color: #783f04;">140 polymorphic values</span></strong> (<strong>103</strong> <strong><span style="color: #783f04;">Farm Avian H1N1</span></strong>), while <strong><span style="color: #783f04;">H6N1</span></strong> continues to participate at a significant level (88 matches). Homology to <strong><span style="color: #783f04;">Avian H9N2</span></strong> (65), <strong><span style="color: #783f04;">H13</span></strong> (53) and the <strong><span style="color: #660000;">High-CFR</span></strong> <strong><span style="color: #783f04;">H5N1</span></strong> (<strong>104</strong>) demonstrates that this pandemic has ample opportunity <strong><span style="color: #783f04;">for genetic input from the extant reservoirs</span></strong> to amplify clinical conditions. <strong><span style="color: #783f04;">GeneWurx LookAside</span></strong> analysis shows that <strong>109</strong> of the 229 distinct <strong><span style="color: #741b47;">pH1N1</span></strong> <strong><span style="color: #274e13;">HA </span></strong>polymorphisms demonstrate an amino acid homology <strong><span style="color: #783f04;">within 1 position</span></strong> upstream or downstream in a <strong><span style="color: #660000;">zoonotic</span></strong> reservoir for a total of <strong>311</strong> <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: #783f04;">LookAside</span></strong> <strong><span style="color: #783f04;">influencers</span></strong>.<br />
<br />
Of 121 distinct <strong><span style="color: #274e13;">NA</span></strong> polymorphisms, <strong>104</strong> are <strong><span style="color: #783f04;">non-swine, zoonotic</span></strong> (86%) and a <strong>minimum of 89</strong> are found on <strong><span style="color: #783f04;">Avian H1N1</span></strong> (74%) with <strong>74 (61%)</strong> of those found on a subset of a dozen <strong><span style="color: #783f04;">Farm Avian H1N1</span></strong> sequences that have <strong><span style="color: #783f04;">consistently matched</span></strong> polymorphisms coming onto the human <strong><span style="color: #4c1130;">H1N1</span></strong> pandemic background since 2009. <strong><span style="color: #274e13;">NA</span></strong> homology with other <strong><span style="color: #783f04;">non-swine</span></strong>, zoonotic reservoirs remains significant: <strong><span style="color: #783f04;">Avian H6N1</span></strong> (<strong><span style="color: #660000;">88 / 73%</span></strong>), <strong><span style="color: #783f04;">Avian H9N2</span></strong> (30) and the <strong><span style="color: #660000;">High-CFR</span></strong> <strong><span style="color: #783f04;">H5N1</span></strong> (54).<br />
<br />
Though the <strong><span style="color: #660000;">zoonotic serotype backgrounds</span></strong> profiled against these human polymorphisms are entirely variant, these <strong><span style="color: #783f04;">many codon-level homologies</span></strong> crossing <strong><span style="color: #783f04;">multiple</span></strong> zoonotic reservoirs into the human pandemic illuminates the <strong><span style="color: #783f04;">GeneWurx </span></strong>premise that the <strong><span style="color: #783f04;">origin</span></strong> of the human H1N1 pandemic be reconsidered as <strong><span style="color: #783f04;">avian</span></strong>. <br />
<br />
<span style="font-size: x-large;"><strong>Cladistics</strong></span><br />
<br />
<strong><span style="color: blue;">Clade1: 189T</span></strong> - 07 Sequences<br />
<strong><span style="color: blue;">Clade2: 188T</span></strong> - 23 Sequences<br />
<strong><span style="color: blue;">Clade3: 186P</span></strong> - 05 Sequences<br />
<strong><span style="color: blue;">Clade5: 208K_219V</span></strong> - 06 Sequences <br />
<br />
<strong><span style="color: #274e13;">HA</span></strong> 638 Polymorphisms Averaging ~<strong><span style="color: #783f04;">13.9 per Segment </span></strong><br />
<strong><span style="color: #274e13;">NA</span></strong> 330 Polymorphisms Averaging ~ <strong><span style="color: #783f04;">7.3 per Segment</span></strong><br />
<br />
<strong><span style="color: #274e13;">HA</span></strong> and <strong><span style="color: #274e13;">NA</span></strong> 968 Total Polymorphisms Averaging ~<strong><span style="color: #783f04;">20.0 across 45 w/ HA & NA</span></strong><br />
<br />
<span style="font-size: x-large;"><strong>TamiFlu Resistance</strong></span><br />
<br />
One <strong><span style="color: #660000;">TamiFlu Resistant</span></strong> sequence (<strong><span style="color: #274e13;">NA</span></strong> <strong><span style="color: blue;">275Y</span></strong>) features on a <strong><span style="color: blue;">Clade2: 188T</span></strong> background and carries <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: #783f04;">RBS</span></strong> <strong><span style="color: blue;">227G</span></strong> with the <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">158E</span></strong> (mixture with wild type) that has repeatedly been observed to promote <strong><span style="color: #660000;">Vaccine Escape</span></strong>. <strong><span style="color: #783f04;">Avian H1N1</span></strong> carries homology with 9 of the 11 <strong><span style="color: #274e13;">HA</span></strong> and 100% of <strong><span style="color: #274e13;">NA</span></strong> polymorphisms on the <strong><span style="color: #660000;">TamiFlu Resistant</span></strong> French case. One small population of <strong><span style="color: #660000;">Farm Avian H1N1</span></strong> sequences matches on 7 of these 11 <strong><span style="color: #274e13;">HA</span></strong> and 5 of 6 <strong><span style="color: #274e13;">NA</span></strong> revisions. <strong><span style="color: #660000;">TamiFlu Resistance Confluence</span></strong> (multiple <strong><span style="color: #660000;">TmX</span></strong> markers) is correlated due to 8 of the 11 <strong><span style="color: #274e13;">HA</span></strong> markers sharing homology to the superset of <strong><span style="color: #4c1130;">pH1N1</span></strong> <strong><span style="color: #274e13;">NA</span></strong> <strong><span style="color: blue;">247N</span></strong> <strong><span style="color: #660000;">TamiFlu Resistant</span></strong> sequences and 100% of the <strong><span style="color: #274e13;">NA</span></strong> changes. Fourteen revisions (8 <strong><span style="color: #274e13;">HA</span></strong> / 6 <strong><span style="color: #274e13;">NA</span></strong>) pattern to the <strong><span style="color: #4c1130;">pH1N1</span></strong> superset of <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">230I</span></strong>-bearing sequences. Eleven changes (8 <strong><span style="color: #274e13;">HA</span></strong> / 3 <strong><span style="color: #274e13;">NA</span></strong>) equate to the <strong><span style="color: #660000;">High-CFR</span></strong> human pandemic <strong><span style="color: #741b47;">Upsilon</span></strong> sub-clade.<br />
<ul>
<li>[<a href="http://pf11.blogspot.com/2011/12/avian-homology-on-high-diversity.html#EPI346699">EPI346699</a>] <strong><span style="color: #783f04;">FranceLorraine1176_50x_2011_02_23</span><span style="color: #660000;">_TmX</span></strong></li>
</ul>
<br />
<span style="font-size: x-large;"><strong>Sequences</strong></span><br />
<br />
<br />
. . . . Madagascar9274_7M_2011_08_11 (<br />
. . . . . . . . GISAID HA EPI346721<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 22 Polymorphisms (12 Amino and 10 Silent)<br />
. . . . . . . . #6M,<br />
. . . . . . . . #4C,<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . syn49G (GGa),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 141Q,<br />
. . . . . . . . 146G,<br />
. . . . . . . . 169S,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . 216G,<br />
. . . . . . . . 259P,<br />
. . . . . . . . syn304G (GGg),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 388R,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn473K (AAg),<br />
. . . . . . . . syn512R (AGa),<br />
. . . . . . . . syn538F (TTt),<br />
. . . . . . . . syn546L (tTA))<br />
<br />
. . . . Madagascar9252_23F_2011_08_10 (<br />
. . . . . . . . GISAID HA EPI346717<br />
. . . . . . . . 19 Polymorphisms (10 Amino and 9 Silent)<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . #6M,<br />
. . . . . . . . #4C,<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . syn49G (GGa),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 141Q,<br />
. . . . . . . . 146G,<br />
. . . . . . . . 169S,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . syn301I (ATa),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 364S,<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn473K (AAg),<br />
. . . . . . . . syn496A (GCg),<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . Madagascar9252_23F_2011_08_10 (<br />
. . . . . . . . GISAID NA EPI346718<br />
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)<br />
. . . . . . . . 126S,<br />
. . . . . . . . syn152R (AGa),<br />
. . . . . . . . syn225R (AGg),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . syn295N (AAt),<br />
. . . . . . . . syn313Q (CAa),<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . 416N)<br />
<br />
. . . . Madagascar8753_xF_2011_08_02 (<br />
. . . . . . . . GISAID HA EPI346715<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 19 Polymorphisms (10 Amino and 9 Silent)<br />
. . . . . . . . #6M,<br />
. . . . . . . . #4C,<br />
. . . . . . . . syn1A (GCt),<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . syn49G (GGa),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 141Q,<br />
. . . . . . . . 146G,<br />
. . . . . . . . 169S,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 400S,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn473K (AAg),<br />
. . . . . . . . syn514Y (TAt),<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . Madagascar8753_xF_2011_08_02 (<br />
. . . . . . . . GISAID NA EPI346716<br />
. . . . . . . . 11 Polymorphisms (5 Amino and 6 Silent)<br />
. . . . . . . . 44S,<br />
. . . . . . . . 56C,<br />
. . . . . . . . 126S,<br />
. . . . . . . . syn225R (AGg),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . syn295N (AAt),<br />
. . . . . . . . syn307N (AAt),<br />
. . . . . . . . syn313Q (CAa),<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa))<br />
<br />
. . . . SouthAfricaJohannesburg150_46F_2011_07_10 (<br />
. . . . . . . . GISAID HA EPI346655<br />
. . . . . . . . Clade5: 208K_219V<br />
. . . . . . . . 16 Polymorphisms (8 Amino and 8 Silent)<br />
. . . . . . . . syn47L (CTg),<br />
. . . . . . . . syn82I (ATc),<br />
. . . . . . . . syn93C (TGc),<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn131S (TCa),<br />
. . . . . . . . 141Q,<br />
. . . . . . . . 142D,<br />
. . . . . . . . syn170N (AAc),<br />
. . . . . . . . 208K,<br />
. . . . . . . . 219V,<br />
. . . . . . . . 252L,<br />
. . . . . . . . syn307P (CCc),<br />
. . . . . . . . 359A,<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn446K (AAa),<br />
. . . . . . . . syn512R (AGa))<br />
<br />
. . . . SouthAfricaJohannesburg150_46F_2011_07_10 (<br />
. . . . . . . . GISAID NA EPI346656<br />
. . . . . . . . 9 Polymorphisms (2 Amino and 7 Silent)<br />
. . . . . . . . syn79S (TCg),<br />
. . . . . . . . syn89S (TCt),<br />
. . . . . . . . syn126P (CCt),<br />
. . . . . . . . syn229S (TCc),<br />
. . . . . . . . syn236G (GGc),<br />
. . . . . . . . 269I mix wt,<br />
. . . . . . . . 299A,<br />
. . . . . . . . syn378N (AAt),<br />
. . . . . . . . syn405S (AGc))<br />
<br />
. . . . CameroonLEID07111870_24F_2011_07_07 (<br />
. . . . . . . . GISAID HA EPI346647<br />
. . . . . . . . Clade1: 189T<br />
. . . . . . . . 13 Polymorphisms (8 Amino and 5 Silent)<br />
. . . . . . . . 1T,<br />
. . . . . . . . syn168Y (TAt),<br />
. . . . . . . . syn176V (GTt),<br />
. . . . . . . . 189T,<br />
. . . . . . . . 205E,<br />
. . . . . . . . syn238E (GAa),<br />
. . . . . . . . 275A,<br />
. . . . . . . . syn286K (AAa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn413K (AAg),<br />
. . . . . . . . 476D,<br />
. . . . . . . . 477K,<br />
. . . . . . . . 523A)<br />
<br />
. . . . CameroonLEID07111870_24F_2011_07_07 (<br />
. . . . . . . . GISAID NA EPI346648<br />
. . . . . . . . 4 Polymorphisms (0 Amino and 4 Silent)<br />
. . . . . . . . syn22L (cTA),<br />
. . . . . . . . syn135T (ACc),<br />
. . . . . . . . syn262K (AAa),<br />
. . . . . . . . syn398E (GAa))<br />
<br />
. . . . SenegalDakar18_4x_2011_07_07 (<br />
. . . . . . . . GISAID HA EPI346685<br />
. . . . . . . . 25 Polymorphisms (8 Amino and 17 Silent)<br />
. . . . . . . . 10H mix wt,<br />
. . . . . . . . 35I,<br />
. . . . . . . . 51V,<br />
. . . . . . . . syn99I (ATt),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 131T,<br />
. . . . . . . . syn152I (ATt),<br />
. . . . . . . . syn154L (CTg),<br />
. . . . . . . . 206S,<br />
. . . . . . . . syn214K (AAa),<br />
. . . . . . . . syn219I (ATt),<br />
. . . . . . . . syn254P (CCa),<br />
. . . . . . . . 262K,<br />
. . . . . . . . syn276H (CAt),<br />
. . . . . . . . syn295F (TTc),<br />
. . . . . . . . syn301I (ATt),<br />
. . . . . . . . syn331G (GGt),<br />
. . . . . . . . syn337A (GCt),<br />
. . . . . . . . syn379T (ACc),<br />
. . . . . . . . syn433E (GAg),<br />
. . . . . . . . syn451K (AAa),<br />
. . . . . . . . syn456L (cTA),<br />
. . . . . . . . 463V,<br />
. . . . . . . . syn475D (GAc),<br />
. . . . . . . . 523A)<br />
<br />
. . . . SenegalDakar18_4x_2011_07_07 (<br />
. . . . . . . . GISAID NA EPI346686<br />
. . . . . . . . 12 Polymorphisms (5 Amino and 7 Silent)<br />
. . . . . . . . syn20A (GCc),<br />
. . . . . . . . 74V,<br />
. . . . . . . . syn89S (TCt),<br />
. . . . . . . . 106V,<br />
. . . . . . . . syn160S (AGt),<br />
. . . . . . . . 166I mix wt,<br />
. . . . . . . . syn275H (CAt),<br />
. . . . . . . . syn304V (GTt),<br />
. . . . . . . . syn382G (GGa),<br />
. . . . . . . . 385T,<br />
. . . . . . . . 386K,<br />
. . . . . . . . syn433E (GAa))<br />
<br />
. . . . SouthAfricaJohannesburg146_xM_2011_06_29 (<br />
. . . . . . . . GISAID HA EPI346653<br />
. . . . . . . . Clade5: 208K_219V<br />
. . . . . . . . 16 Polymorphisms (9 Amino and 7 Silent)<br />
. . . . . . . . syn47L (CTg),<br />
. . . . . . . . syn75T (ACc),<br />
. . . . . . . . syn82I (ATc),<br />
. . . . . . . . syn93C (TGc),<br />
. . . . . . . . 100N,<br />
. . . . . . . . 141Q,<br />
. . . . . . . . syn170N (AAc),<br />
. . . . . . . . 208K,<br />
. . . . . . . . 218V mix wt,<br />
. . . . . . . . 219V,<br />
. . . . . . . . 252L,<br />
. . . . . . . . 301V mix wt,<br />
. . . . . . . . syn307P (CCc),<br />
. . . . . . . . 359A,<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn446K (AAa))<br />
<br />
. . . . SouthAfricaJohannesburg146_xM_2011_06_29 (<br />
. . . . . . . . GISAID NA EPI346654<br />
. . . . . . . . 8 Polymorphisms (1 Amino and 7 Silent)<br />
. . . . . . . . syn89S (TCt),<br />
. . . . . . . . syn126P (CCt),<br />
. . . . . . . . syn229S (TCc),<br />
. . . . . . . . syn236G (GGc),<br />
. . . . . . . . 299A,<br />
. . . . . . . . syn355N (AAc),<br />
. . . . . . . . syn405S (AGc),<br />
. . . . . . . . syn427I (ATt))<br />
<br />
. . . . Madagascar3520_52M_2011_06_17 (<br />
. . . . . . . . GISAID HA EPI346719<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 19 Polymorphisms (11 Amino and 8 Silent)<br />
. . . . . . . . #6M,<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . syn44L (tTA),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 132D,<br />
. . . . . . . . 145R,<br />
. . . . . . . . 146G,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . 237I,<br />
. . . . . . . . syn265G (GGg),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 397S,<br />
. . . . . . . . 452I,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn496A (GCc),<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . Madagascar3520_52M_2011_06_17 (<br />
. . . . . . . . GISAID NA EPI346720<br />
. . . . . . . . 9 Polymorphisms (5 Amino and 4 Silent)<br />
. . . . . . . . 44S,<br />
. . . . . . . . 151N mix wt,<br />
. . . . . . . . syn177V (GTt),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 339P,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn378N (AAt))<br />
<br />
. . . . CameroonLEID06111809_33M_2011_06_16 (<br />
. . . . . . . . GISAID HA EPI346645<br />
. . . . . . . . Clade1: 189T<br />
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)<br />
. . . . . . . . 1T,<br />
. . . . . . . . 189T,<br />
. . . . . . . . syn210S (AGt),<br />
. . . . . . . . syn238E (GAa),<br />
. . . . . . . . 275A,<br />
. . . . . . . . syn286K (AAa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn403L (tTG),<br />
. . . . . . . . 437I mix wt,<br />
. . . . . . . . 439N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . 476D,<br />
. . . . . . . . 477K,<br />
. . . . . . . . 523A,<br />
. . . . . . . . 531I)<br />
<br />
. . . . CameroonLEID06111809_33M_2011_06_16 (<br />
. . . . . . . . GISAID NA EPI346646<br />
. . . . . . . . 5 Polymorphisms (1 Amino and 4 Silent)<br />
. . . . . . . . syn22L (cTA),<br />
. . . . . . . . syn161C (TGc),<br />
. . . . . . . . 262R,<br />
. . . . . . . . syn368R (AGg),<br />
. . . . . . . . syn398E (GAa))<br />
<br />
. . . . ThailandNonthaburi78_2011_06_08 (<br />
. . . . . . . . GISAID HA EPI346707<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 14 Polymorphisms (8 Amino and 6 Silent)<br />
. . . . . . . . #6M,<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 146G,<br />
. . . . . . . . syn178V (GTa),<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . 218E mix wt,<br />
. . . . . . . . 218V mix wt,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 375V,<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . ThailandNonthaburi78_2011_06_08 (<br />
. . . . . . . . GISAID NA EPI346708<br />
. . . . . . . . 9 Polymorphisms (4 Amino and 5 Silent)<br />
. . . . . . . . syn14C (TGc),<br />
. . . . . . . . 26T,<br />
. . . . . . . . syn41G (GGa),<br />
. . . . . . . . 44S,<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn378N (AAt))<br />
<br />
. . . . SouthAfricaJohannesburg128_1F_2011_06_07 (<br />
. . . . . . . . GISAID HA EPI346651<br />
. . . . . . . . Clade5: 208K_219V<br />
. . . . . . . . 19 Polymorphisms (9 Amino and 10 Silent)<br />
. . . . . . . . syn#6L (tTG),<br />
. . . . . . . . syn47L (CTg),<br />
. . . . . . . . 51T,<br />
. . . . . . . . syn74S (TCt),<br />
. . . . . . . . syn82I (ATc),<br />
. . . . . . . . syn93C (TGc),<br />
. . . . . . . . 100N,<br />
. . . . . . . . 141Q,<br />
. . . . . . . . syn170N (AAc),<br />
. . . . . . . . 208K,<br />
. . . . . . . . 219V,<br />
. . . . . . . . 252L,<br />
. . . . . . . . syn307P (CCc),<br />
. . . . . . . . 359A,<br />
. . . . . . . . syn366A (GCa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 404D,<br />
. . . . . . . . syn446K (AAa),<br />
. . . . . . . . syn477T (ACa))<br />
<br />
. . . . SouthAfricaJohannesburg128_1F_2011_06_07 (<br />
. . . . . . . . GISAID NA EPI346652<br />
. . . . . . . . 10 Polymorphisms (2 Amino and 8 Silent)<br />
. . . . . . . . syn89S (TCt),<br />
. . . . . . . . syn126P (CCt),<br />
. . . . . . . . 157A mix wt,<br />
. . . . . . . . syn163I (ATc),<br />
. . . . . . . . syn229S (TCc),<br />
. . . . . . . . syn236G (GGc),<br />
. . . . . . . . syn241V (GTg),<br />
. . . . . . . . syn298G (GGa),<br />
. . . . . . . . 299A,<br />
. . . . . . . . syn342G (GGg))<br />
<br />
. . . . HongKong3960_2M_2011_04_21 (<br />
. . . . . . . . GISAID HA EPI346726<br />
. . . . . . . . Clade1.Upsilon (5.33% CFR)<br />
. . . . . . . . 15 Polymorphisms (9 Amino and 6 Silent)<br />
. . . . . . . . #12E [Novel to Upsilon],<br />
. . . . . . . . #8I,<br />
. . . . . . . . 34D,<br />
. . . . . . . . syn118E (GAa),<br />
. . . . . . . . 144E,<br />
. . . . . . . . 165N,<br />
. . . . . . . . 189T,<br />
. . . . . . . . syn213F (TTt),<br />
. . . . . . . . 275I,<br />
. . . . . . . . syn287G (GGg),<br />
. . . . . . . . syn305K (AAg),<br />
. . . . . . . . syn346G (GGa),<br />
. . . . . . . . syn397G (GGc),<br />
. . . . . . . . 453K,<br />
. . . . . . . . 502K)<br />
<br />
. . . . HongKong3960_2M_2011_04_21 (<br />
. . . . . . . . GISAID NA EPI346727<br />
. . . . . . . . 6 Polymorphisms (1 Amino and 5 Silent)<br />
. . . . . . . . syn20A (GCc),<br />
. . . . . . . . 82P,<br />
. . . . . . . . syn139L (TTa),<br />
. . . . . . . . syn300N (AAc),<br />
. . . . . . . . syn327R (CGt),<br />
. . . . . . . . syn330D (GAc))<br />
<br />
<a href="http://www.blogger.com/" name="EPI346724"></a><br />
. . . . SenegalDakar14_1x_2011_04_14 (<br />
. . . . . . . . GISAID HA EPI346724<br />
. . . . . . . . 29 Polymorphisms (10 Amino and 19 Silent)<br />
. . . . . . . . 16I,<br />
. . . . . . . . 35I [H5N1 TmX247],<br />
. . . . . . . . 89E [H1N1 Avian],<br />
. . . . . . . . syn99I (ATt) [H1N1 Avian],<br />
. . . . . . . . syn122K (AAa) [H5N1 Avian],<br />
. . . . . . . . 131T [H5N1 Avian],<br />
. . . . . . . . syn152I (ATt),<br />
. . . . . . . . syn154L (CTg) [H9N2 Avian],<br />
. . . . . . . . 206S,<br />
. . . . . . . . syn214K (AAa) [H9N2 Avian],<br />
. . . . . . . . syn219I (ATt),<br />
. . . . . . . . syn254P (CCa) [H9N2 Avian],<br />
. . . . . . . . 262K [H5N1 Avian],<br />
. . . . . . . . 266A,<br />
. . . . . . . . syn276H (CAt) [H1N1 Avian],<br />
. . . . . . . . syn295F (TTc) [H9N2 Avian],<br />
. . . . . . . . syn301I (ATt),<br />
. . . . . . . . syn331G (GGt) [H1N1 Avian],<br />
. . . . . . . . syn337A (GCt) [H9N2 Avian],<br />
. . . . . . . . syn338G (GGc) [H6N1 Avian],<br />
. . . . . . . . 377K [H9N2 Avian],<br />
. . . . . . . . syn379T (ACc) [H6N1 Avian],<br />
. . . . . . . . syn433E (GAg) [H6N1 Avian],<br />
. . . . . . . . syn451K (AAa) [H6N1 Avian],<br />
. . . . . . . . syn456L (cTA) [H6N1 Avian],<br />
. . . . . . . . 463V,<br />
. . . . . . . . syn475D (GAc) [H6N1 Avian],<br />
. . . . . . . . 523A [H1N1 Avian],<br />
. . . . . . . . syn527L (TTa))<br />
<br />
. . . . SenegalDakar14_1x_2011_04_14 (<br />
. . . . . . . . GISAID NA EPI346725<br />
. . . . . . . . 11 Polymorphisms (4 Amino and 7 Silent)<br />
. . . . . . . . syn20A (GCc) [H1N1 Avian],<br />
. . . . . . . . 74V [H1N1 Avian],<br />
. . . . . . . . syn89S (TCt),<br />
. . . . . . . . 106V [H1N1 Avian],<br />
. . . . . . . . syn127L (cTG) [H1N1 Avian],<br />
. . . . . . . . syn183A (GCc) [H1N1 Avian],<br />
. . . . . . . . syn304V (GTt) [H1N1 Avian],<br />
. . . . . . . . syn382G (GGa) [H1N1 Avian (Gaa)],<br />
. . . . . . . . 385T,<br />
. . . . . . . . 386K,<br />
. . . . . . . . syn433E (GAa) [H1N1 Avian])<br />
<br />
. . . . CameroonLEID04111671_1F_2011_04_12 (<br />
. . . . . . . . GISAID HA EPI346691<br />
. . . . . . . . Clade1: 189T<br />
. . . . . . . . 14 Polymorphisms (9 Amino and 5 Silent)<br />
. . . . . . . . 1T,<br />
. . . . . . . . syn97D (GAc),<br />
. . . . . . . . syn130D (GAt),<br />
. . . . . . . . 155I,<br />
. . . . . . . . 189T,<br />
. . . . . . . . syn238E (GAa),<br />
. . . . . . . . 275A,<br />
. . . . . . . . syn286K (AAa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn403L (tTG),<br />
. . . . . . . . 476D,<br />
. . . . . . . . 477K,<br />
. . . . . . . . 509D,<br />
. . . . . . . . 523A)<br />
<br />
. . . . CameroonLEID04111671_1F_2011_04_12 (<br />
. . . . . . . . GISAID NA EPI346692<br />
. . . . . . . . 5 Polymorphisms (0 Amino and 5 Silent)<br />
. . . . . . . . syn22L (cTA),<br />
. . . . . . . . syn170Y (TAt),<br />
. . . . . . . . syn262K (AAa),<br />
. . . . . . . . syn398E (GAa),<br />
. . . . . . . . syn421C (TGt))<br />
<br />
. . . . SenegalDakar11_4x_2011_04_06 (<br />
. . . . . . . . GISAID HA EPI346683<br />
. . . . . . . . Clade3: 186P, novel sub-clade<br />
. . . . . . . . 22 Polymorphisms (8 Amino and 14 Silent)<br />
. . . . . . . . 12T,<br />
. . . . . . . . 35I,<br />
. . . . . . . . syn99I (ATt),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 131T,<br />
. . . . . . . . syn152I (ATt),<br />
. . . . . . . . syn154L (CTg),<br />
. . . . . . . . 186P,<br />
. . . . . . . . 206S,<br />
. . . . . . . . syn214K (AAa),<br />
. . . . . . . . syn219I (ATt),<br />
. . . . . . . . syn254P (CCa),<br />
. . . . . . . . 262K,<br />
. . . . . . . . syn276H (CAt),<br />
. . . . . . . . syn301I (ATt),<br />
. . . . . . . . syn331G (GGt),<br />
. . . . . . . . syn337A (GCt),<br />
. . . . . . . . syn379T (ACc),<br />
. . . . . . . . syn433E (GAg),<br />
. . . . . . . . syn456L (cTA),<br />
. . . . . . . . 463V,<br />
. . . . . . . . 523A)<br />
<br />
. . . . SenegalDakar11_4x_2011_04_06 (<br />
. . . . . . . . GISAID NA EPI346684<br />
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)<br />
. . . . . . . . syn20A (GCc),<br />
. . . . . . . . syn89S (TCt),<br />
. . . . . . . . 106V,<br />
. . . . . . . . syn172S (TCt),<br />
. . . . . . . . 259D,<br />
. . . . . . . . syn304V (GTt),<br />
. . . . . . . . syn382G (GGa),<br />
. . . . . . . . 385T,<br />
. . . . . . . . 386K,<br />
. . . . . . . . syn415L (tTG))<br />
<br />
. . . . SenegalDakar09_3x_2011_03_25 (<br />
. . . . . . . . GISAID HA EPI346703<br />
. . . . . . . . 24 Polymorphisms (8 Amino and 16 Silent)<br />
. . . . . . . . 35I,<br />
. . . . . . . . 47I,<br />
. . . . . . . . syn99I (ATt),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 131T,<br />
. . . . . . . . syn152I (ATt),<br />
. . . . . . . . syn154L (CTg),<br />
. . . . . . . . 206S,<br />
. . . . . . . . syn214K (AAa),<br />
. . . . . . . . syn219I (ATt),<br />
. . . . . . . . syn254P (CCa),<br />
. . . . . . . . 262K,<br />
. . . . . . . . syn276H (CAt),<br />
. . . . . . . . syn288A (GCc),<br />
. . . . . . . . syn301I (ATt),<br />
. . . . . . . . syn325P (CCt),<br />
. . . . . . . . syn331G (GGt),<br />
. . . . . . . . syn337A (GCt),<br />
. . . . . . . . syn379T (ACc),<br />
. . . . . . . . syn433E (GAg),<br />
. . . . . . . . syn456L (cTA),<br />
. . . . . . . . 463V,<br />
. . . . . . . . 481N,<br />
. . . . . . . . 523A)<br />
<br />
. . . . SenegalDakar09_3x_2011_03_25 (<br />
. . . . . . . . GISAID NA EPI346704<br />
. . . . . . . . 10 Polymorphisms (3 Amino and 7 Silent)<br />
. . . . . . . . syn20A (GCc),<br />
. . . . . . . . syn89S (TCt),<br />
. . . . . . . . 106V,<br />
. . . . . . . . syn281C (TGc),<br />
. . . . . . . . syn304V (GTt),<br />
. . . . . . . . syn370G (GGc),<br />
. . . . . . . . syn371F (TTc),<br />
. . . . . . . . syn382G (GGa),<br />
. . . . . . . . 385T,<br />
. . . . . . . . 386K)<br />
<br />
. . . . Iceland59_xF_2011_03_24 (<br />
. . . . . . . . GISAID HA EPI346697<br />
. . . . . . . . Clade3: 186P<br />
. . . . . . . . 13 Polymorphisms (6 Amino and 7 Silent)<br />
. . . . . . . . 137T mix wt,<br />
. . . . . . . . 144S,<br />
. . . . . . . . syn163K (AAa),<br />
. . . . . . . . 186P,<br />
. . . . . . . . syn251L (CTg),<br />
. . . . . . . . syn287G (GGg),<br />
. . . . . . . . syn293L (CTt),<br />
. . . . . . . . 298V,<br />
. . . . . . . . syn363G (GGg),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn455Q (CAa),<br />
. . . . . . . . syn474C (TGt),<br />
. . . . . . . . 482I)<br />
<br />
. . . . Iceland59_xF_2011_03_24 (<br />
. . . . . . . . GISAID NA EPI346698<br />
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)<br />
. . . . . . . . 46T,<br />
. . . . . . . . syn187G (GGt),<br />
. . . . . . . . 313R,<br />
. . . . . . . . 321V,<br />
. . . . . . . . 394I,<br />
. . . . . . . . syn412L (tTA),<br />
. . . . . . . . syn430R (CGg),<br />
. . . . . . . . 467V)<br />
<br />
. . . . CameroonLEID03111616_xM_2011_03_22 (<br />
. . . . . . . . GISAID HA EPI346689<br />
. . . . . . . . Clade1: 189T<br />
. . . . . . . . 12 Polymorphisms (8 Amino and 4 Silent)<br />
. . . . . . . . 1T,<br />
. . . . . . . . 167F,<br />
. . . . . . . . 189T,<br />
. . . . . . . . syn238E (GAa),<br />
. . . . . . . . 275A,<br />
. . . . . . . . syn286K (AAa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn403L (tTG),<br />
. . . . . . . . 476D,<br />
. . . . . . . . 477K,<br />
. . . . . . . . 523A,<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . CameroonLEID03111616_xM_2011_03_22 (<br />
. . . . . . . . GISAID NA EPI346690<br />
. . . . . . . . 5 Polymorphisms (1 Amino and 4 Silent)<br />
. . . . . . . . syn22L (cTA),<br />
. . . . . . . . syn118R (AGa),<br />
. . . . . . . . syn262K (AAa),<br />
. . . . . . . . 386D,<br />
. . . . . . . . syn398E (GAa))<br />
<br />
. . . . FrancePaysdeLoire1347_12x_2011_03_22 (<br />
. . . . . . . . GISAID HA EPI346701<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 12 Polymorphisms (4 Amino and 8 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn135V (GTg),<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn321L (cTG),<br />
. . . . . . . . syn336I (ATc),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn400F (TTt),<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn482V (GTt))<br />
<br />
. . . . FrancePaysdeLoire1347_12x_2011_03_22 (<br />
. . . . . . . . GISAID NA EPI346702<br />
. . . . . . . . 8 Polymorphisms (2 Amino and 6 Silent)<br />
. . . . . . . . syn162P (CCc),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . syn313Q (CAa),<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn401G (GGg),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . Iceland52_xM_2011_03_18 (<br />
. . . . . . . . GISAID HA EPI346643<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)<br />
. . . . . . . . 87I,<br />
. . . . . . . . 100N,<br />
. . . . . . . . 158E mix wt,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 212N mix wt,<br />
. . . . . . . . syn304G (GGg),<br />
. . . . . . . . syn319T (ACg),<br />
. . . . . . . . 324I,<br />
. . . . . . . . 377K,<br />
. . . . . . . . 440H mix wt,<br />
. . . . . . . . syn441H (CAt),<br />
. . . . . . . . 454N)<br />
<br />
. . . . Iceland52_xM_2011_03_18 (<br />
. . . . . . . . GISAID NA EPI346644<br />
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . UkraineDnipropetrovsk4929_21F_2011_03_10 (<br />
. . . . . . . . GISAID HA EPI346637<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 7 Polymorphisms (4 Amino and 3 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N)<br />
<br />
. . . . UkraineDnipropetrovsk4929_21F_2011_03_10 (<br />
. . . . . . . . GISAID NA EPI346638<br />
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . UkraineZaporizhzhya5200_31F_2011_03_09 (<br />
. . . . . . . . GISAID HA EPI346663<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 10 Polymorphisms (6 Amino and 4 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . 326F,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 415E,<br />
. . . . . . . . syn441H (CAt),<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N)<br />
<br />
. . . . UkraineZaporizhzhya5200_31F_2011_03_09 (<br />
. . . . . . . . GISAID NA EPI346664<br />
. . . . . . . . 7 Polymorphisms (4 Amino and 3 Silent)<br />
. . . . . . . . 96R mix wt,<br />
. . . . . . . . 127F,<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . UkraineLuhansk5192_xF_2011_03_07 (<br />
. . . . . . . . GISAID HA EPI346639<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . . . . . crossing Clade3: 186P<br />
. . . . . . . . 16 Polymorphisms (6 Amino and 10 Silent)<br />
. . . . . . . . syn10Y (TAc),<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . syn118E (GAa),<br />
. . . . . . . . syn130D (GAt),<br />
. . . . . . . . 146G,<br />
. . . . . . . . 186P mix wt,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . syn358N (Aac) mix,<br />
. . . . . . . . syn358T mix,<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn412K (AAg),<br />
. . . . . . . . syn418F (TTt),<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . UkraineLuhansk5192_xF_2011_03_07 (<br />
. . . . . . . . GISAID NA EPI346640<br />
. . . . . . . . 7 Polymorphisms (4 Amino and 3 Silent)<br />
. . . . . . . . 44S,<br />
. . . . . . . . 83G,<br />
. . . . . . . . syn206L (cTA),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa))<br />
<br />
. . . . CameroonLEID03111573_xM_2011_03_01 (<br />
. . . . . . . . GISAID HA EPI346687<br />
. . . . . . . . 14 Polymorphisms (9 Amino and 5 Silent)<br />
. . . . . . . . 1T,<br />
. . . . . . . . syn157K (AAg),<br />
. . . . . . . . 158E mix wt,<br />
. . . . . . . . syn173G (GGa),<br />
. . . . . . . . 190G,<br />
. . . . . . . . 205E mix wt,<br />
. . . . . . . . syn238E (GAa),<br />
. . . . . . . . 275A,<br />
. . . . . . . . syn286K (AAa),<br />
. . . . . . . . syn334G (GGa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 476D,<br />
. . . . . . . . 477K,<br />
. . . . . . . . 523A)<br />
<br />
. . . . CameroonLEID03111573_xM_2011_03_01 (<br />
. . . . . . . . GISAID NA EPI346688<br />
. . . . . . . . 4 Polymorphisms (0 Amino and 4 Silent)<br />
. . . . . . . . syn6K (AAa),<br />
. . . . . . . . syn22L (cTA),<br />
. . . . . . . . syn262K (AAa),<br />
. . . . . . . . syn398E (GAa))<br />
<br />
. . . . UkraineOdessa5197_24F_2011_03_01 (<br />
. . . . . . . . GISAID HA EPI346641<br />
. . . . . . . . 3 Polymorphisms (1 Amino and 2 Silent)<br />
. . . . . . . . syn391T (ACc),<br />
. . . . . . . . syn413K (AAg),<br />
. . . . . . . . 415E mix wt)<br />
<br />
. . . . UkraineOdessa5197_24F_2011_03_01 (<br />
. . . . . . . . GISAID NA EPI346642<br />
. . . . . . . . 2 Polymorphisms (0 Amino and 2 Silent)<br />
. . . . . . . . syn330D (GAc),<br />
. . . . . . . . syn407V (GTc))<br />
<br />
<a href="http://www.blogger.com/" name="EPI346699"></a><br />
. . . . FranceLorraine1176_50x_2011_02_23_TmX (<br />
. . . . . . . . GISAID HA EPI346699<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 11 Polymorphisms (6 Amino and 5 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . 158E mix wt,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 227G,<br />
. . . . . . . . syn245F (TTt),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn461K (AAa),<br />
. . . . . . . . syn470F (TTc),<br />
. . . . . . . . syn537S (AGc))<br />
<br />
. . . . FranceLorraine1176_50x_2011_02_23_TmX (<br />
. . . . . . . . GISAID NA EPI346700<br />
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 275Y,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . LithuaniaKlaipeda1067_xF_2011_02_22 (<br />
. . . . . . . . GISAID HA EPI346673<br />
. . . . . . . . Clade3: 186P<br />
. . . . . . . . 11 Polymorphisms (5 Amino and 6 Silent)<br />
. . . . . . . . 137T,<br />
. . . . . . . . 186P,<br />
. . . . . . . . syn279N (AAc),<br />
. . . . . . . . syn288A (GCc),<br />
. . . . . . . . syn352Y (TAt),<br />
. . . . . . . . 377G,<br />
. . . . . . . . syn408E (GAa),<br />
. . . . . . . . syn474C (TGt),<br />
. . . . . . . . syn475D (GAc),<br />
. . . . . . . . 512M,<br />
. . . . . . . . 530I)<br />
<br />
. . . . LithuaniaKlaipeda1067_xF_2011_02_22 (<br />
. . . . . . . . GISAID NA EPI346674<br />
. . . . . . . . 14 Polymorphisms (3 Amino and 11 Silent)<br />
. . . . . . . . syn20A (GCc),<br />
. . . . . . . . syn66Y (TAc),<br />
. . . . . . . . syn124C (TGt),<br />
. . . . . . . . syn130R (AGg),<br />
. . . . . . . . syn157T (ACt),<br />
. . . . . . . . syn175E (GAa),<br />
. . . . . . . . 232V,<br />
. . . . . . . . syn302P (CCa),<br />
. . . . . . . . syn382G (GGa),<br />
. . . . . . . . 389V,<br />
. . . . . . . . 394I,<br />
. . . . . . . . syn425E (GAg),<br />
. . . . . . . . syn428R (AGg),<br />
. . . . . . . . syn430R (CGg))<br />
<br />
. . . . LithuaniaTelsiai1038_xM_2011_02_19 (<br />
. . . . . . . . GISAID HA EPI346671<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 9 Polymorphisms (4 Amino and 5 Silent)<br />
. . . . . . . . syn#6L (CTa),<br />
. . . . . . . . 100N,<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn245F (TTt),<br />
. . . . . . . . syn321L (cTG),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn537S (AGc))<br />
<br />
. . . . LithuaniaTelsiai1038_xM_2011_02_19 (<br />
. . . . . . . . GISAID NA EPI346672<br />
. . . . . . . . 6 Polymorphisms (2 Amino and 4 Silent)<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc),<br />
. . . . . . . . syn436I (ATa))<br />
<br />
. . . . LithuaniaTelsiai1037_xM_2011_02_19 (<br />
. . . . . . . . GISAID HA EPI346669<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 9 Polymorphisms (4 Amino and 5 Silent)<br />
. . . . . . . . syn#6L (CTa),<br />
. . . . . . . . 100N,<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn245F (TTt),<br />
. . . . . . . . syn321L (cTG),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn537S (AGc))<br />
<br />
. . . . LithuaniaTelsiai1037_xM_2011_02_19 (<br />
. . . . . . . . GISAID NA EPI346670<br />
. . . . . . . . 6 Polymorphisms (2 Amino and 4 Silent)<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc),<br />
. . . . . . . . syn436I (ATa))<br />
<br />
. . . . LithuaniaKaunas146s_xM_2011_02_17 (<br />
. . . . . . . . GISAID HA EPI346675<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 8 Polymorphisms (5 Amino and 3 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . 152M,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N)<br />
<br />
. . . . LithuaniaKaunas146s_xM_2011_02_17 (<br />
. . . . . . . . GISAID NA EPI346676<br />
. . . . . . . . 7 Polymorphisms (3 Amino and 4 Silent)<br />
. . . . . . . . syn162P (CCc),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc),<br />
. . . . . . . . 453M)<br />
<br />
. . . . LithuaniaKaunas988_xM_2011_02_15 (<br />
. . . . . . . . GISAID HA EPI346667<br />
. . . . . . . . Clade2: 188T <br />
. . . . . . . . . . . . crossed with Clade4:128D<br />
. . . . . . . . 9 Polymorphisms (6 Amino and 3 Silent)<br />
. . . . . . . . 59S,<br />
. . . . . . . . syn69E (GAa) [Upsilon?],<br />
. . . . . . . . 100N,<br />
. . . . . . . . 128D,<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn537S (AGc))<br />
<br />
. . . . LithuaniaKaunas988_xM_2011_02_15 (<br />
. . . . . . . . GISAID NA EPI346668<br />
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . FranceParis940_16x_2011_02_11 (<br />
. . . . . . . . GISAID HA EPI346722<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 15 Polymorphisms (8 Amino and 7 Silent)<br />
. . . . . . . . syn10Y (TAc),<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . 76T,<br />
. . . . . . . . 146G,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . 205E mix wt,<br />
. . . . . . . . 277N,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . syn358N (AAc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn418F (TTt),<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . FranceParis940_16x_2011_02_11 (<br />
. . . . . . . . GISAID NA EPI346723<br />
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)<br />
. . . . . . . . 44S,<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa))<br />
<br />
. . . . FranceCentre869_60x_2011_02_08 (<br />
. . . . . . . . GISAID HA EPI346681<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 9 Polymorphisms (5 Amino and 4 Silent)<br />
. . . . . . . . syn31H (CAt),<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . 205E,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N)<br />
<br />
. . . . FranceCentre869_60x_2011_02_08 (<br />
. . . . . . . . GISAID NA EPI346682<br />
. . . . . . . . 10 Polymorphisms (3 Amino and 7 Silent)<br />
. . . . . . . . syn162P (CCc),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . syn316Y (TAt),<br />
. . . . . . . . 344K,<br />
. . . . . . . . syn365I (ATc),<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn390K (AAa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . FranceHauteNormandie774_3x_2011_02_01 (<br />
. . . . . . . . GISAID HA EPI346679<br />
. . . . . . . . Clade5: 208K_219V<br />
. . . . . . . . 14 Polymorphisms (7 Amino and 7 Silent)<br />
. . . . . . . . syn41N (AAt),<br />
. . . . . . . . syn47L (CTg),<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn102E (GAa),<br />
. . . . . . . . 133E,<br />
. . . . . . . . syn170N (AAc),<br />
. . . . . . . . 208K,<br />
. . . . . . . . 219V,<br />
. . . . . . . . syn221P (CCt),<br />
. . . . . . . . 252L,<br />
. . . . . . . . syn319T (ACg),<br />
. . . . . . . . 352F,<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn446K (AAa))<br />
<br />
. . . . FranceHauteNormandie774_3x_2011_02_01 (<br />
. . . . . . . . GISAID NA EPI346680<br />
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)<br />
. . . . . . . . syn60T (ACc),<br />
. . . . . . . . 81A,<br />
. . . . . . . . syn138A (GCt),<br />
. . . . . . . . 151N mix wt,<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa))<br />
<br />
. . . . Hungary13_xM_2011_01_31 (<br />
. . . . . . . . GISAID HA EPI346711<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 9 Polymorphisms (6 Amino and 3 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . 157E,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . 226R,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N)<br />
<br />
. . . . Hungary13_xM_2011_01_31 (<br />
. . . . . . . . GISAID NA EPI346712<br />
. . . . . . . . 7 Polymorphisms (2 Amino and 5 Silent)<br />
. . . . . . . . syn162P (CCc),<br />
. . . . . . . . syn191L (tTA),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
<a href="http://www.blogger.com/" name="EPI346709"></a><br />
. . . . Hungary7_xM_2011_01_31 (<br />
. . . . . . . . GISAID HA EPI346709<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 11 Polymorphisms (8 Amino and 3 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . 157E mix wt,<br />
. . . . . . . . 158E mix wt,<br />
. . . . . . . . 159D mix wt,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . 226R,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 454N)<br />
<br />
. . . . Hungary7_xM_2011_01_31 (<br />
. . . . . . . . GISAID NA EPI346710<br />
. . . . . . . . 6 Polymorphisms (2 Amino and 4 Silent)<br />
. . . . . . . . syn162P (CCc),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . TurkeyMalatyaTR_29_28M_2011_01_28 (<br />
. . . . . . . . GISAID HA EPI346659<br />
. . . . . . . . Clade3: 186P<br />
. . . . . . . . 11 Polymorphisms (8 Amino and 3 Silent)<br />
. . . . . . . . syn16T (ACg),<br />
. . . . . . . . 137T,<br />
. . . . . . . . 167F,<br />
. . . . . . . . 186P,<br />
. . . . . . . . 263K,<br />
. . . . . . . . 377G,<br />
. . . . . . . . syn408E (GAa),<br />
. . . . . . . . 413R mix wt,<br />
. . . . . . . . syn474C (TGt),<br />
. . . . . . . . 512M,<br />
. . . . . . . . 530I)<br />
<br />
. . . . TurkeyMalatyaTR_29_28M_2011_01_28 (<br />
. . . . . . . . GISAID NA EPI346660<br />
. . . . . . . . 13 Polymorphisms (4 Amino and 9 Silent)<br />
. . . . . . . . syn20A (GCc),<br />
. . . . . . . . syn66Y (TAc),<br />
. . . . . . . . syn124C (TGt),<br />
. . . . . . . . syn130R (AGg),<br />
. . . . . . . . syn157T (ACt),<br />
. . . . . . . . syn175E (GAa),<br />
. . . . . . . . 232V,<br />
. . . . . . . . 267I,<br />
. . . . . . . . syn382G (GGa),<br />
. . . . . . . . 389V,<br />
. . . . . . . . 394I,<br />
. . . . . . . . syn425E (GAg),<br />
. . . . . . . . syn430R (CGg))<br />
<br />
. . . . CameroonLEID01111467_28F_2011_01_27 (<br />
. . . . . . . . GISAID HA EPI346705<br />
. . . . . . . . Clade1: 189T<br />
. . . . . . . . 11 Polymorphisms (7 Amino and 4 Silent)<br />
. . . . . . . . 1T,<br />
. . . . . . . . 189T,<br />
. . . . . . . . syn238E (GAa),<br />
. . . . . . . . 275A,<br />
. . . . . . . . syn286K (AAa),<br />
. . . . . . . . syn340I (ATc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn403L (tTG),<br />
. . . . . . . . 476D,<br />
. . . . . . . . 477K,<br />
. . . . . . . . 523A)<br />
<br />
. . . . CameroonLEID01111467_28F_2011_01_27 (<br />
. . . . . . . . GISAID NA EPI346706<br />
. . . . . . . . 4 Polymorphisms (0 Amino and 4 Silent)<br />
. . . . . . . . syn22L (cTA),<br />
. . . . . . . . syn262K (AAa),<br />
. . . . . . . . syn271A (GCt),<br />
. . . . . . . . syn398E (GAa))<br />
<br />
. . . . Kazakhstan2081_xF_2011_01_23 (<br />
. . . . . . . . GISAID HA EPI346713<br />
. . . . . . . . Clade3: 186P<br />
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)<br />
. . . . . . . . 137T,<br />
. . . . . . . . 186P,<br />
. . . . . . . . syn297N (AAc),<br />
. . . . . . . . syn316R (AGg),<br />
. . . . . . . . syn326S (TCc),<br />
. . . . . . . . syn383N (AAc),<br />
. . . . . . . . syn388K (AAa),<br />
. . . . . . . . 433K,<br />
. . . . . . . . 444K,<br />
. . . . . . . . syn474C (TGt))<br />
<br />
. . . . Kazakhstan2081_xF_2011_01_23 (<br />
. . . . . . . . GISAID NA EPI346714<br />
. . . . . . . . 7 Polymorphisms (1 Amino and 6 Silent)<br />
. . . . . . . . syn6K (AAa),<br />
. . . . . . . . syn139L (cTG),<br />
. . . . . . . . syn202A (GCt),<br />
. . . . . . . . syn274Y (TAc),<br />
. . . . . . . . syn275H (CAt),<br />
. . . . . . . . syn372E (GAa),<br />
. . . . . . . . 394I)<br />
<br />
. . . . CameroonLEID01111450_3F_2011_01_19 (<br />
. . . . . . . . GISAID HA EPI346649<br />
. . . . . . . . Clade1: 189T<br />
. . . . . . . . 12 Polymorphisms (9 Amino and 3 Silent)<br />
. . . . . . . . 1T,<br />
. . . . . . . . 159S,<br />
. . . . . . . . 189T,<br />
. . . . . . . . 205E,<br />
. . . . . . . . syn238E (GAa),<br />
. . . . . . . . 275A,<br />
. . . . . . . . syn286K (AAa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn403L (tTG),<br />
. . . . . . . . 476D,<br />
. . . . . . . . 477K,<br />
. . . . . . . . 523A)<br />
<br />
. . . . CameroonLEID01111450_3F_2011_01_19 (<br />
. . . . . . . . GISAID NA EPI346650<br />
. . . . . . . . 4 Polymorphisms (1 Amino and 3 Silent)<br />
. . . . . . . . syn22L (cTA),<br />
. . . . . . . . 59R,<br />
. . . . . . . . syn262K (AAa),<br />
. . . . . . . . syn398E (GAa))<br />
<br />
. . . . Iceland9_xF_2011_01_19 (<br />
. . . . . . . . GISAID HA EPI346695<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 15 Polymorphisms (10 Amino and 5 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . 159D,<br />
. . . . . . . . syn179L (tTA),<br />
. . . . . . . . 188T,<br />
. . . . . . . . 225N,<br />
. . . . . . . . syn245F (TTt),<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 437I (Atc) mix wt,<br />
. . . . . . . . 437I (Att) mix wt,<br />
. . . . . . . . 437N (Aac) mix wt,<br />
. . . . . . . . 437N (Aat) mix wt,<br />
. . . . . . . . syn437T (Acc) mix wt,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn537S (AGc))<br />
<br />
. . . . Iceland9_xF_2011_01_19 (<br />
. . . . . . . . GISAID NA EPI346696<br />
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . TurkeyTokatTR_26_26M_2011_01_19 (<br />
. . . . . . . . GISAID HA EPI346657<br />
. . . . . . . . Clade5: 208K_219V<br />
. . . . . . . . . . . . crossing Clade4: 128D<br />
. . . . . . . . 14 Polymorphisms (8 Amino and 6 Silent)<br />
. . . . . . . . syn47L (CTg),<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn102E (GAa),<br />
. . . . . . . . 128D,<br />
. . . . . . . . syn170N (AAc),<br />
. . . . . . . . 208K,<br />
. . . . . . . . 210I mix wt,<br />
. . . . . . . . 219V,<br />
. . . . . . . . syn221P (CCt),<br />
. . . . . . . . 252L,<br />
. . . . . . . . syn319T (ACg),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 431Q mix wt,<br />
. . . . . . . . syn446K (AAa))<br />
<br />
. . . . TurkeyTokatTR_26_26M_2011_01_19 (<br />
. . . . . . . . GISAID NA EPI346658<br />
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)<br />
. . . . . . . . syn60T (ACc),<br />
. . . . . . . . 81A,<br />
. . . . . . . . syn138A (GCt),<br />
. . . . . . . . 211T mix wt,<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa))<br />
<br />
. . . . Iceland7_xM_2011_01_16 (<br />
. . . . . . . . GISAID HA EPI346661<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 10 Polymorphisms (7 Amino and 3 Silent)<br />
. . . . . . . . #7I,<br />
. . . . . . . . 100N,<br />
. . . . . . . . 157N mix wt,<br />
. . . . . . . . syn179L (CTg),<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn448L (TTg),<br />
. . . . . . . . 449C mix wt,<br />
. . . . . . . . 454N)<br />
<br />
. . . . Iceland7_xM_2011_01_16 (<br />
. . . . . . . . GISAID NA EPI346662<br />
. . . . . . . . 7 Polymorphisms (3 Amino and 4 Silent)<br />
. . . . . . . . 117M,<br />
. . . . . . . . syn162P (CCc),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
. . . . Iceland3_xM_2011_01_10 (<br />
. . . . . . . . GISAID HA EPI346677<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 12 Polymorphisms (6 Amino and 6 Silent)<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . syn122K (AAa),<br />
. . . . . . . . 146G,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn379T (ACc),<br />
. . . . . . . . 440H,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn538F (TTt))<br />
<br />
. . . . Iceland3_xM_2011_01_10 (<br />
. . . . . . . . GISAID NA EPI346678<br />
. . . . . . . . 10 Polymorphisms (6 Amino and 4 Silent)<br />
. . . . . . . . syn38I (ATc),<br />
. . . . . . . . 44S,<br />
. . . . . . . . 151E mix wt,<br />
. . . . . . . . 151K mix wt,<br />
. . . . . . . . 151N mix wt,<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . syn274Y (TAc),<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa))<br />
<br />
. . . . TurkeyAnkaraTR_23_20M_2010_12_30 (<br />
. . . . . . . . GISAID HA EPI346693<br />
. . . . . . . . Clade5: 208K_219V<br />
. . . . . . . . . . . . crossing Clade3: 186P<br />
. . . . . . . . 15 Polymorphisms (9 Amino and 6 Silent)<br />
. . . . . . . . syn47L (CTg),<br />
. . . . . . . . 100N,<br />
. . . . . . . . syn102E (GAa),<br />
. . . . . . . . 159D mix wt,<br />
. . . . . . . . syn170N (AAc),<br />
. . . . . . . . 186P mix wt,<br />
. . . . . . . . 208K,<br />
. . . . . . . . 219V,<br />
. . . . . . . . 252L,<br />
. . . . . . . . syn346G (GGa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 426V,<br />
. . . . . . . . syn446K (AAa),<br />
. . . . . . . . syn507K (AAa), <br />
. . . . . . . . 530I)<br />
<br />
. . . . TurkeyAnkaraTR_23_20M_2010_12_30 (<br />
. . . . . . . . GISAID NA EPI346694<br />
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)<br />
. . . . . . . . syn238C (TGt),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa))<br />
<br />
. . . . UKEngland687_2010_12_15 (<br />
. . . . . . . . GISAID HA EPI346665<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . 11 Polymorphisms (7 Amino and 4 Silent)<br />
. . . . . . . . syn#7V (GTc),<br />
. . . . . . . . 59S,<br />
. . . . . . . . syn69E (GAa),<br />
. . . . . . . . 100N,<br />
. . . . . . . . 158E mix wt,<br />
. . . . . . . . 179I,<br />
. . . . . . . . 188T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn537S (AGc))<br />
<br />
. . . . UKEngland687_2010_12_15 (<br />
. . . . . . . . GISAID NA EPI346666<br />
. . . . . . . . 7 Polymorphisms (2 Amino and 5 Silent)<br />
. . . . . . . . syn161C (TGc),<br />
. . . . . . . . syn240T (ACc),<br />
. . . . . . . . 241I,<br />
. . . . . . . . 369K,<br />
. . . . . . . . syn377P (CCa),<br />
. . . . . . . . syn398E (GAa),<br />
. . . . . . . . syn416D (GAc))<br />
<br />
<br />
This analysis catalysed with <strong><span style="color: #783f04;">ingenuity</span></strong> from 2 lead Professors of <strong><span style="color: #783f04;">Group10</span></strong> at <strong><span style="color: #783f04;">Ion</span><sub>203</sub></strong>. We never cease to find inspiration in your halls of instruction.<br />
<br />
<br />
<div align="center">
<span style="font-size: x-small;">Please visit </span><a href="http://genewurx.com/" target="_blank"><span style="font-size: x-small;">GeneWurx.com</span></a><span style="font-size: x-small;"> for insight into the latest published studies.</span> <a href="http://genewurx.com/" imageanchor="1" style="margin-left: 1em; margin-right: 1em;" target="_blank"><img alt="GeneWurx.com" border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjlhcDlruUxY7P71MI5KGK2KKCz2mq15G-wy026m24qyAfkHqh34MK4Tz5MyJZBAHLOfW-fghNuBZDSmwGGBD1fOqrpBUGuxIDABXGKsqNWBJIbxd_L7bk_lfjw0yU_a6UGf1CubcEofyrE/s320/Logo_GeneWurx_corner_bk_1in.jpg" yr="true" /></a> </div>NS1http://www.blogger.com/profile/02690880554918462424noreply@blogger.comtag:blogger.com,1999:blog-4506613821928567934.post-32383511437940983662011-11-05T23:45:00.003-05:002011-11-05T23:54:53.162-05:00Greece Deposits pH1N1 Clade5 from 2011 Hospitalisation with Novel Diversity<span style="font-size: x-small;"><em>Sequences discussed in this analysis are variously stored publicly at GenBank and at GISAID. We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GenBank and from GISAID’s EpiFlu™ Database on which this research is based. A GISAID-generated list is detailed in a linked </em></span><a href="http://genewurx.com/data/citation/GISAID_2011_10_31_Greece_Citation.xls" target="_blank"><span style="font-size: x-small;"><em>spreadsheet</em></span></a><span style="font-size: x-small;"><em> for completeness in citation.</em></span><br />
<br />
<span style="color: black;">Last Update</span><br />
2011-11-05<br />
<br />
On 2011-10-31, the <strong><span style="color: #783f04;">Institut Pasteur Hellenique</span></strong> deposited one human <strong><span style="color: #4c1130;">pH1N1</span></strong> <strong><span style="color: #274e13;">HA</span></strong> fragment sequence at <strong>GISAID</strong> of 216 amino acids (aa35 to aa220), documenting roughly 38% of a full <strong><span style="color: #4c1130;">pH1N1</span></strong> Hemagglutinin segment. <strong><span style="color: #783f04;">GreeceAthens7033_75M_2011_02_22_s</span></strong> was sampled from a 75 year old male, <strong><span style="color: #783f04;">hospital inpatient</span></strong>. This hypermorphic fragment patterns onto <strong><span style="color: blue;">Clade5: 208K_219V</span></strong>, a highly zoonotic, recently emergent series with a sequence count that has quickly accumulated to triple digits. <br />
<br />
Two dispersed polymorphisms, each <strong><span style="color: #660000;">novel</span></strong> to <strong><span style="color: #4c1130;">pH1N1</span></strong>.<strong><span style="color: blue;">Clade5</span></strong>, appear on this Greek sequence. <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">77R</span></strong>, a <strong><span style="color: #660000;">novel</span></strong> <strong><span style="color: blue;">Clade5</span></strong> revision, is rare to the human pandemic and is <strong><span style="color: #783f04;">emergent</span></strong> on <strong><span style="color: blue;">Clade2</span></strong> (<a href="http://pf11.blogspot.com/2011/11/greece-deposits-ph1n1-clade5-from-2011.html#Clade2_77R">3 instances</a>). Those 3 <strong><span style="color: blue;">Clade2</span></strong>, <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">77R</span></strong>-bearing <strong><span style="color: #274e13;">HA</span></strong> segment sequences are hypermorphic (accounting for 48 total <strong><span style="color: #274e13;">HA</span></strong> changes); however, no <strong><span style="color: #274e13;">HA</span></strong> cross-over onto this Greek sequence occurs from the full superset of polymorphisms with <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">77R</span></strong>. <strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">169T</span></strong>, also <strong><span style="color: #660000;">novel</span></strong> to <strong><span style="color: blue;">Clade5</span></strong>, is rare to the human pandemic and is found once on <strong><span style="color: blue;">Clade2</span></strong>, the numerically dominant series for human <strong><span style="color: #4c1130;">pH1N1</span></strong>. <br />
<br />
Avian H13 serotypes share <strong><span style="color: #783f04;">significant homology</span></strong> with <strong><span style="color: #4c1130;">pH1N1</span></strong>.<strong><span style="color: blue;">Clade5</span></strong> and this Greek sequence. Given the serology background of the more recently discovered Hemagglutinin forms above H12 (~30 years for H13 to ~6 years for H16), question arise <strong><span style="color: #783f04;">concerning cross-serotype compatibility</span></strong>. Returning to the archives after these recent discoveries, investigators repeatedly found that H16 samples from the past had been <strong><span style="color: #783f04;">mis-typed on first inspection</span></strong> to various Hemagglutinin forms (H1, H7, H13) due to <strong><span style="color: #783f04;">cross-reactive serology</span></strong> on various inhibition panels. Serotypes <strong><span style="color: #783f04;">known to infect humans</span></strong>, including H1 and H7, featured in those earlier mistaken categorisations. <br />
<br />
Precise discernment of the exact relationship between the current <strong><span style="color: #4c1130;">human pandemic H1N1</span></strong> and the more recently discovered Hemagglutinin forms (H13 to H16) merits evaluation due to the significant <strong><span style="color: #783f04;">H13 homology</span></strong> with the heavily zoonotic and rapidly emergent <strong><span style="color: #4c1130;">pH1N1</span></strong>.<strong><span style="color: blue;">Clade5</span></strong> and the <strong><span style="color: #660000;">High CFR</span></strong> <strong><span style="color: #4c1130;">pH1N1</span></strong>.<strong><span style="color: blue;">Clade1.Upsilon</span></strong>.<br />
<br />
<span style="font-size: x-large;"><strong>Sequence</strong></span><br />
<br />
. . . . GreeceAthens7033_75M_2011_02_22_s (<br />
. . . . . . . . Clade5: <a href="http://pf11.blogspot.com/2011/06/sweden-signals-rapid-zoonosis-from.html" target="_blank">208K_219V</a> <br />
. . . . . . . . GISAID HA EPI340964<br />
. . . . . . . . 9 Polymorphisms (5 Amino and 4 Silent)<br />
. . . . . . . . HA Truncated before aa35,<br />
. . . . . . . . syn47L (CTg) [H1N1 Avian],<br />
. . . . . . . . 77R (AGa) [<strong><span style="color: #660000;">Rare </span></strong>to Human pH1N1 (11 Total / 5 Asia)],<br />
. . . . . . . . . . . . . . . [<strong><span style="color: #660000;">Novel </span></strong>to pH1N1.<strong><span style="color: blue;">Clade5</span></strong>],<br />
. . . . . . . . . . . . . . . [<strong><span style="color: #660000;">Emergent</span></strong> pH1N1.<strong><span style="color: blue;">Clade2</span></strong> (3)],<br />
. . . . . . . . . . . . . . . [H9N2 Avian and Human wt<br />
. . . . . . . . . . . . . . . . . . . . with pH1N1υ polymorphisms],<br />
. . . . . . . . . . . . . . . [H13N2 Mammal<br />
. . . . . . . . . . . . . . . . . . . with 188T, 225G & 252L],<br />
. . . . . . . . . . . . . . . [H13N2, H13N3, H13N6, H13N8, H13N9 Avian],<br />
. . . . . . . . . . . . . . . [WSN_1933, WSZ_1933],<br />
. . . . . . . . 100N [H5N1 Egypt Avian 2009-2010 <br />
. . . . . . . . . . . . . . . . . with syn40H, syn55L, 192I, 196K],<br />
. . . . . . . . . . . . [H5N1 Egypt Avian 2008 with syn40H, syn55L],<br />
. . . . . . . . . . . . [H5N2 Italy Avian 2005-2007],<br />
. . . . . . . . . . . . [H7N3, H7N7, H9N2],<br />
. . . . . . . . . . . . [H13N2 Mammal],<br />
. . . . . . . . . . . . [H13N2, H13N3, H13N6, H13N8, H13N9 Avian],<br />
. . . . . . . . . . . . [H1N1 Avian],<br />
. . . . . . . . syn102E (GAa) [H5N1 wt],<br />
. . . . . . . . . . . . . . . . . . . [H9N2 Early Human wt, Human 2008],<br />
. . . . . . . . . . . . . . . . . . . [H9N2 Avian wt],<br />
. . . . . . . . . . . . . . . . . . . [H10N7 Avian 2008 <br />
. . . . . . . . . . . . . . . . . . . . . . with 87N, 100N, syn102E,<br />
. . . . . . . . . . . . . . . . . . . . . . . . 156E, 157E, 163T, 165N, <br />
. . . . . . . . . . . . . . . . . . . . . . . . syn177L, 188T, syn221P, syn207S, syn213F,<br />
. . . . . . . . . . . . . . . . . . . . . . . . 225G, 230I, 233H, 237I, syn239P,<br />
. . . . . . . . . . . . . . . . . . . . . . . . syn338G, syn346G, syn356H, <br />
. . . . . . . . . . . . . . . . . . . . . . . . syn390N, syn391T],<br />
. . . . . . . . . . . . . . . . . . . [H1N1 Avian <br />
. . . . . . . . . . . . . . . . . . . . . . with extensive pH1N1υ polymorphisms],<br />
. . . . . . . . 169T [<strong><span style="color: #660000;">Rare</span></strong> to Human pH1N1 (6 Total / 3 <a href="http://pf11.blogspot.com/2011/11/greece-deposits-ph1n1-clade5-from-2011.html#EPI256314">Asia</a>)],<br />
. . . . . . . . . . . [<strong><span style="color: #660000;">Novel</span></strong> to pH1N1.<strong><span style="color: blue;">Clade5</span></strong>],<br />
. . . . . . . . . . . [<a href="http://pf11.blogspot.com/2011/11/greece-deposits-ph1n1-clade5-from-2011.html#EPI310031">Singular</a> to pH1N1.<strong><span style="color: blue;">Clade2</span></strong>],<br />
. . . . . . . . . . . [H1N1 Avian wt],<br />
. . . . . . . . . . . [H1N1 swine],<br />
. . . . . . . . syn170N (AAc) [H5N1 Egypt Human 2009],<br />
. . . . . . . . . . . . . . . . . . [H13N2 Mammal <br />
. . . . . . . . . . . . . . . . . . . . . with 188T, 225G & 252L],<br />
. . . . . . . . . . . . . . . . . . [H13N3, H13N6, H13N8, H13N9 Avian<br />
. . . . . . . . . . . . . . . . . . . . . with 225G & 252L],<br />
. . . . . . . . . . . . . . . . . . [H1N1 Avian <br />
. . . . . . . . . . . . . . . . . . . . . . with extensive pH1N1υ polymorphisms],<br />
. . . . . . . . 208K (AaA) [pH1N1 Canine 2009],<br />
. . . . . . . . . . . . . . . . [H1N1 Avian wt],<br />
. . . . . . . . . . . . . . . . [H3N2 Avian 2006, 2009],<br />
. . . . . . . . 219V (gTA) [H13N2 Mammal <br />
. . . . . . . . . . . . . . . . . . . with 188T, 225G & 252L],<br />
. . . . . . . . . . . . . . . . [H13N2, H13N6, H13N8, H13N9 Avian<br />
. . . . . . . . . . . . . . . . . . . with 188T, 225G & 252L],<br />
. . . . . . . . syn221P (CCt) [H3N2 Avian <br />
. . . . . . . . . . . . . . . . . . . . . with 157S, 159S, syn287G],<br />
. . . . . . . . . . . . . . . . . . [H5N1 Egypt Human and Avian (tCt)],<br />
. . . . . . . . . . . . . . . . . . [H5N1 Nigeria Avian (tCt)],<br />
. . . . . . . . . . . . . . . . . . [H10N7 Avian 2008 <br />
. . . . . . . . . . . . . . . . . . . . . . . with #1V, 87N, syn94Y, 100N, syn102E,<br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . 156E, 157E, 163T, 165N, <br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . syn177L, 188T, syn221P, syn207S, syn213F,<br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . 225G, 230I, 233H, 237I, syn239P,<br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . syn338G, syn346G, syn356H, <br />
. . . . . . . . . . . . . . . . . . . . . . . . . . . syn390N, syn391T],<br />
. . . . . . . . . . . . . . . . . . [H13N2 Mammal],<br />
. . . . . . . . . . . . . . . . . . [H13N2, H13N3, H13N6, H13N8, H13N9 Avian],<br />
. . . . . . . . . . . . . . . . . . [H1N1 Avian <br />
. . . . . . . . . . . . . . . . . . . . . with extensive pH1N1υ polymorphisms],<br />
. . . . . . . . HA Truncated after aa250)<br />
<br />
<span style="font-size: x-large;"><strong>Supporting Sequences</strong></span><br />
<br />
<strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">169T</span></strong><br />
<a href="http://www.blogger.com/" name="EPI310031"></a><br />
. . . . Montana03_2011_02_02 (<br />
. . . . . . . . Clade2: 188T<br />
. . . . . . . . GISAID HA EPI310031<br />
. . . . . . . . 8 Polymorphisms (6 Amino and 2 Silent)<br />
. . . . . . . . 100N,<br />
. . . . . . . . 169T,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 213S,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . 377K,<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn537S (AGc))<br />
<br />
. . . . Lebanon09L_29_2009_11_05 (<br />
. . . . . . . . GISAID HA EPI320624<br />
. . . . . . . . 4 Polymorphisms (4 Amino and 0 Silent)<br />
. . . . . . . . #1T,<br />
. . . . . . . . 169T,<br />
. . . . . . . . 225E,<br />
. . . . . . . . 300S,<br />
. . . . . . . . HA Truncated after aa355)<br />
<a href="http://www.blogger.com/" name="EPI256314"></a><br />
. . . . ShanxiChengquSWL547_2009_10_19 (<br />
. . . . . . . . GISAID HA EPI256314<br />
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)<br />
. . . . . . . . 57N,<br />
. . . . . . . . 131P,<br />
. . . . . . . . 169T,<br />
. . . . . . . . syn238E (GAa))<br />
<br />
. . . . TianjinTangguSWL1110_2009_10_13 (<br />
. . . . . . . . GISAID HA EPI256126<br />
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)<br />
. . . . . . . . 169T,<br />
. . . . . . . . 206S,<br />
. . . . . . . . 447K,<br />
. . . . . . . . syn455Q (CAa))<br />
<br />
. . . . BeijingHuairouSWL1805_2009_10_01 (<br />
. . . . . . . . GISAID HA EPI256274<br />
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)<br />
. . . . . . . . 169T,<br />
. . . . . . . . 206S,<br />
. . . . . . . . 447K,<br />
. . . . . . . . syn455Q (CAa))<br />
<br />
. . . . Russia01_MA_2009 (<br />
. . . . . . . . GISAID HA EPI297205<br />
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)<br />
. . . . . . . . 169T,<br />
. . . . . . . . 208K,<br />
. . . . . . . . syn359E (GAa))<br />
<a href="http://www.blogger.com/" name="Clade2_77R"></a><br />
<strong><span style="color: #274e13;">HA</span></strong> <strong><span style="color: blue;">77R</span></strong> on <strong><span style="color: blue;">Clade2</span></strong><br />
<br />
. . . . OzBrisbane500_2011_06_22 (<br />
. . . . . . . . GISAID HA EPI333109<br />
. . . . . . . . 18 Polymorphisms (8 Amino and 10 Silent)<br />
. . . . . . . . syn10Y (TAc),<br />
. . . . . . . . syn33V (GTc),<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . 77R,<br />
. . . . . . . . syn99I (ATt),<br />
. . . . . . . . syn115E (GAg),<br />
. . . . . . . . 146G,<br />
. . . . . . . . 171G,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . syn346G (GGa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn413K (AAg),<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn508L (tTG),<br />
. . . . . . . . 523A,<br />
. . . . . . . . HA Truncated after aa552)<br />
<br />
. . . . OzNewcastle1_2011_04_11 (<br />
. . . . . . . . GISAID HA EPI331558<br />
. . . . . . . . 21 Polymorphisms (9 Amino and 12 Silent)<br />
. . . . . . . . syn10Y (TAc),<br />
. . . . . . . . syn33V (GTc),<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . 77R,<br />
. . . . . . . . syn99I (ATt),<br />
. . . . . . . . syn115E (GAg),<br />
. . . . . . . . 146G,<br />
. . . . . . . . 157Q mix wt,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . syn346G (GGa),<br />
. . . . . . . . 377K,<br />
. . . . . . . . syn413K (AAg),<br />
. . . . . . . . 454N,<br />
. . . . . . . . syn465N (AAt),<br />
. . . . . . . . syn508L (tTG),<br />
. . . . . . . . 523A,<br />
. . . . . . . . syn538F (TTt),<br />
. . . . . . . . syn549R (AGg),<br />
. . . . . . . . 550S,<br />
. . . . . . . . HA Truncated after aa550)<br />
<br />
. . . . JapanHiroshimaC2_2011_01_05 (<br />
. . . . . . . . GISAID HA EPI305466<br />
. . . . . . . . 9 Polymorphisms (6 Amino and 3 Silent)<br />
. . . . . . . . syn10Y (TAc),<br />
. . . . . . . . syn34N (AAt),<br />
. . . . . . . . 71D,<br />
. . . . . . . . 77R,<br />
. . . . . . . . 102G mix wt,<br />
. . . . . . . . 146G,<br />
. . . . . . . . 188T,<br />
. . . . . . . . 200T,<br />
. . . . . . . . syn338G (GGc),<br />
. . . . . . . . HA Truncated after aa348)<br />
<br />
<br />
<br />
<br />
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