pH1N1 Exceeds 75% Amino Acid Instability in Critical Range with SNP Matching Bird Flu

Last Updated 2010-12-15

Let's examine, for a moment, why sequence stability in a pandemic virus is a matter of public concern.

95% Amino Acid Instability + 5% Silent Nucleotide Instability = 100% Overall Instability

Antibody response via the adaptive arm of immunity is developed in the human body against specific amino acid sequences found on a pathogen, e.g. influenza.  A viral reservoir continually attempts to escape the host-developed antibody pool by self-revising these defining amino acid sequences.  Some reservoirs are more aggressive than others in these self-revisions. 

An aggressively revising viral reservoir may effectively escape host antibodies, the mode of defense developed in challenge to a vaccine and / or natural infection, if the pathogen's amino acid changes are widespread, frequent and / or situated in particular areas of the gene code.  At this point, all should be aware of individuals who have contracted influenza multiple times, some after having been vaccinated.  In these instances, a potential explanation lies in this reservoir's enhanced genetic acquisition cycle. 

We continue to evaluate known epitope domains and the surrounding areas in an effort to quantify the potential for immune and / or vaccine escape in this pandemic.

The ΣPF11 reservoir (pH1N1) exceeded the 75% threshold for Amino Acid Instability in a critical HA range with a deposit from the Istituto Nazionale Malattie Infettive 'L. Spallanzani' in Rome.  A/Rome/676/2009, a partial sequence from a 39 year old female sampled on 2009-10-28, carries 242E encoded by a first base revision from aAA to create gAA.  Several animal flu serotypes (avian/equine) carry the first base change required to build this novel pandemic 242E, including H2N3, H3N8, H5N1 and the H11 series.  Zoonotic changes are now common in this reservoir.

The HA of the Rome676 sequence also carries a rare synonymous 190D revision (GAt) found a total of 10 times in the entire GenBank pandemic database and concentrated in Italy (6) with limited presence in the Ukraine, the United States and Afghanistan.  This 1918 polymorphism has been conserved on record in swine since at least 1931, was found in the 1976 zoonosis of H1N1 and was carried in the 2005 human seasonal H1N1 (Thai271_S5).

As we have previously reported, 100% of the Hemagglutinin positions between 186 and 248, including antigenic areas of the Receptor Binding Domain (RBD/RBS), are on record as polymorphic. No position in that range is stable.  Many positions rate multiple changes.  Protein revision is documented at 60 of the 63 positions (95%), engaging the potential for antibody resistance (natural immune escape and vaccine escape). 

The viral reservoir backing this present H1N1 flu pandemic is far from stable and is actively acquiring new genetics. Current data does not indicate an immediate direction toward stability.

A complete version with the polymorphisms denoted may be referenced for verification.  Please review details on the causality behind this particular study in the earliest version.

Details and Previous Study on this Topic:

• 2010-05-09 pH1N1 Demonstrates 95% Instability In Critical Genetics Range with Extensive Bird Flu Inclusions
• 2010-05-05 90% Change Rate on Unstable HA Antigen Range with H9N2 and H5N1 Bird Flu Matches
• 2010-03-31 Zoonotic H9N2 Avian Influenza Further Destabilises H1N1 Pandemic Genetics

Please visit GeneWurx.com for insight into the latest published studies.

pH1N1 Surpasses 95% Instability In Critical Genetics Range with Extensive Bird Flu Inclusions

Last Updated 2011-03-16

In positions where this flu is revising the pandemic gene code, the ΣPF11 reservoir (pH1N1) presently exhibits a strong pattern of alliance with serotypes normally infecting birds, horses and dogs.

100% of the Hemagglutinin positions between 186 and 248, including antigenic areas of the Receptor Binding Domain (RBD/RBS), are on record as polymorphic. No position in that range is stable.  Many positions rate multiple changes.  Protein revision is documented at 60 of the 63 positions (95%), engaging the potential for antibody resistance (natural immune escape and vaccine escape). 

Please recall from earlier analyses (linked in the ultimate paragraph) that individual single nucleotide polymorphisms (SNPs) have been correlated to escape events (low reactor).

The list presented today is certainly not comprehensive.  Only one section is discussed from one gene segment (HA) covering 63 contiguous amino acid positions. The extensive variation in that short range is detailed in the data listing.

Viral revision is also rapidly occurring in additional HA antigenic areas outside the range of positions documented in this analysis.  The Neuraminidase of the human pandemic H1N1 reservoir is acquiring revisions with homology to Avian and Equine influenza at a ratio to total changes even higher than that of the Hemagglutinin being surveyed in this analysis.

The viral reservoir backing this present H1N1 flu pandemic is far from stable and is actively acquiring new genetics. Current data does not indicate an immediate direction toward stability.

A previous version of this listing may be referenced for tracking.  Please review details on the causality behind this particular study in the earliest version.

186S synonymous (TCc)
. . . . Russia61,
. . . . BZ_SaoPaulo53823_2009_08_01_f (188I),
. . . . BadenWurttemberg8_2010, TexasJMS387_2009_12_08,
. . . . KO_Daegu1873_2009_12_16_TmX,
. . . . H9N2 (cCc, cac)
186C (TgT)
. . . . IndiaSrinagar8_2010_01_11 (
. . . . . . . . syn143G,
. . . . . . . . 186C,
. . . . . . . . syn244T,
. . . . . . . . 259G,
. . . . . . . . 260K)
186P (cCT)
. . . . SwedenStockholm5_2010_08_27 (
. . . . . . . . 137T [41 sequences at GISAID],
. . . . . . . . syn163K,
. . . . . . . . 186P,
. . . . . . . . syn363G [21 sequences at GISAID],
. . . . . . . . syn474C,
. . . . . . . . 525G mix [Unique to GISAID; Unique to GenBank]),
. . . . OzCanberra8_2010_08_15 (
. . . . . . . . 137T,
. . . . . . . . syn163K,
. . . . . . . . 186P,
. . . . . . . . syn363G,
. . . . . . . . syn397G,
. . . . . . . . syn474C),
. . . . India5103_2010_08_09_VxX (
. . . . . . . . syn60I,
. . . . . . . . 100N,
. . . . . . . . 132D mix wt,
. . . . . . . . syn135V,
. . . . . . . . 186P,
. . . . . . . . 188T,
. . . . . . . . syn338G,
. . . . . . . . 377K,
. . . . . . . . 450K [Rare to GISAID]
. . . . . . . . . . . [GreeceAthensINS122_2009_12_09
. . . . . . . . . . . . . . . . with syn275V, syn380N, syn473K],
. . . . . . . . 454N),
. . . . Florida13_2010_08_02 (
. . . . . . . . 51T,
. . . . . . . . 137T,
. . . . . . . . 186P,
. . . . . . . . syn363G,
. . . . . . . . 377G,
. . . . . . . . syn474C,
. . . . . . . . 512M),
. . . . India007_2010_06_17 (
. . . . . . . . 137T,
. . . . . . . . syn163K,
. . . . . . . . 186P,
. . . . . . . . syn363G,
. . . . . . . . syn378I,
. . . . . . . . syn474C),
. . . . India3725_2010_04_03 (
. . . . . . . . 137T,
. . . . . . . . syn167S,
. . . . . . . . 186P,
. . . . . . . . syn474C,
. . . . . . . . syn526S [Malmoe2_2010_05_07 with 89G]),
. . . . CalifVRDL7_2009_06_17 (
. . . . . . . . syn12A, 206T, 225G),
. . . . Kansas03_2009_04_24_GQ168644 (
. . . . . . . . #1T,
. . . . . . . . syn161Y [H3N8 2009, H6N1, H9N2],
. . . . . . . . 186P mix,
. . . . . . . . syn456L),
. . . . Ontario25913_2009_09_07_TmX (
. . . . . . . . #12E,
. . . . . . . . 186P,
. . . . . . . . 208K,
. . . . . . . . 275A,
. . . . . . . . 296H,
. . . . . . . . 512K [SpainCatS1761_2009_11_09
. . . . . . . . . . . . . . . . . . with 225E, syn305K]),
. . . . UkrChernihiv857_2009_11_14_xL_f (
. . . . . . . . 186P,
. . . . . . . . 225G mix wt,
. . . . . . . . syn238E,
. . . . . . . . 252M,
. . . . . . . . 324I,
. . . . . . . . syn413K,
. . . . . . . . syn431L,
. . . . . . . . syn484N),
. . . . Ankara17,
. . . . Thessaloniki791_2010 mix (
. . . . . . . . . . . .  syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . .  syn171D [M7, H3N8, H9N2],
. . . . . . . . . . . . 186P,
. . . . . . . . . . . .  225G,
. . . . . . . . . . . .  syn233Y [H9N2],
. . . . . . . . . . . .  324I,
. . . . . . . . . . . . 377K [H9N2]),
. . . . swNC19646_2010_04_20 (
. . . . . . . . . . . . 122N,
. . . . . . . . . . . . 158E [H3N8, H5N1],
. . . . . . . . . . . . 186P,
. . . . . . . . . . . . 231S,
. . . . . . . . . . . . 253I,
. . . . . . . . . . . . syn346G [H3N2, H3N8, H5N1, H6N2, H6N4, H10N7],
. . . . . . . . . . . . . . . . . . . [UkrDnipropetrovsk445_2010_04_19,
. . . . . . . . . . . . . . . . . . . Texas03_2010_06_01,
. . . . . . . . . . . . . . . . . . . Arizona06_2010_05_29,
. . . . . . . . . . . . . . . . . . . Calif09_2010_05_11,
. . . . . . . . . . . . . . . . . . . Wisconsin06_2010_04_28,
. . . . . . . . . . . . . . . . . . . Hawaii06_2010_04_19,
. . . . . . . . . . . . . . . . . . . Minnesota04_2010_03_22,
. . . . . . . . . . . . . . . . . . .. . . . . . . . . . with 230I (ATa),
. . . . . . . . . . . . . . . . . . . Wisconsin03_2010_03_12,
. . . . . . . . . . . . . . . . . . . Arizona03_2010_03_06,
. . . . . . . . . . . . . . . . . . . Fixed in non-PF11 Emergent swine lineages],
. . . . . . . . . . . . syn413K [H9N2]),
. . . . tkOntarioFAV114_17_2009 _11_03 (2E, 186P, 208K,
. . . . . . . . . . . . . . . . . . . . . . 296H, 512K),
. . . . tkOntarioFAV117_1C_2009_12_07 (
. . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . syn55L,
. . . . . . . . . . . . syn152I,
. . . . . . . . . . . . 186P,
. . . . . . . . . . . . syn205G [H6, H7N7],
. . . . . . . . . . . . syn219I,
. . . . . . . . . . . . syn276H [1918, S5],
. . . . . . . . . . . . syn456L [H5N1],
. . . . . . . . . . . . 463V,
. . . . . . . . . . . . syn486T,
. . . . . . . . . . . . 523A)
. . . . Avian H12N5
186F (TtT) Ankara26
187T synonymous (ACc) Berlin164, Iran572, BeijingXicheng11649,
. . . . S5, 1918,
. . . . H9N2
187A (gCT) 
. . . . ENG423_2009 (140L, 213V, syn456L [H5N1]),
. . . . TexasJMS405_2010_01_09 (
. . . . . . . . 187A,
. . . . . . . . syn256Y,
. . . . . . . . syn283Q,
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . 377K,
. . . . . . . . syn547Q),
. . . . TexasJMS406_2010_01_10 (
. . . . . . . . 187A,
. . . . . . . . syn193S,
. . . . . . . . syn256Y,
. . . . . . . . syn283Q,
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . 377K,
. . . . . . . . syn547Q),
. . . . H5N1 (gaT)
187N (AaT)
. . . . RussiaStPeterRII96_2009_10_29 (
. . . . . . . . syn23L,
. . . . . . . . syn91G,
. . . . . . . . syn166K,
. . . . . . . . 187N,
. . . . . . . . syn305K,
. . . . . . . . syn484N)
188S synonymous (AGc)
. . . . NY6943_2009_12_07_xL (
. . . . . . . . syn131S [Russia, Afghan, Kenya,
. . . . . . . . . . . . . . IndiaPune10278_2009_09,
. . . . . . . . . . . . . . Wisconsin, California,
. . . . . . . . . . . . . . Nicaragua, Greece],
. . . . . . . . syn188S [GermanyAF2210_2010_03_18 with 165N],
. . . . . . . . 189T [H5, H6, H9N2],
. . . . . . . . syn361G [1918, WSN33, tn],
. . . . . . . . . . . . . . . [Latvia12_649_2009_12_09,

. . . . . . . . . . . . . . . Stockholm107_2009_11_24,
. . . . . . . . . . . . . . . Latvia11_1133_2009_11_16,
. . . . . . . . . . . . . . . Latvia11_1133M_2009_11_16,
. . . . . . . . . . . . . . . Latvia11_575_2009_11_11,
. . . . . . . . . . . . . . . Utah32_2009_10_14],
. . . . . . . . syn413K [H9N2])
188T (Acc)
. . . . JapanShizuoka20_2011_01_18 (
. . . . . . . . syn1A (GCc) [KoreaAF21786_42M_2011_01_04_VxX
. . . . . . . . . . . . . . . . . . . . . . . . with 188T (Acc),
. . . . . . . . . . . . . . . . . . . Chungbuk2826_2010_12_14
. . . . . . . . . . . . . . . . . . . . . . . . with 188T (Acc),
. . . . . . . . . . . . . . . . . . . Gyeonggi2623_2010_11_24
. . . . . . . . . . . . . . . . . . . . . . . . with 188T (Acc),
. . . . . . . . . . . . . . . . . . . Georgia4573_2009_12_23],
. . . . . . . . syn31H (CAt) [31 GISAID],
. . . . . . . . . . . . . . . . . . . [Conserved Asia],
. . . . . . . . 100N,
. . . . . . . . 188T (Acc) [H7N3, H7N7],
. . . . . . . . . . . . . . . . . . [Unique to PF11 Korea 2010 (2)],
. . . . . . . . 208K,
. . . . . . . . 237L,
. . . . . . . . syn271S (TCg) [OzDarwin43_2010_07_23
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with 166N, syn239P,
. . . . . . . . . . . . . . . . . . . . . CalifSD_INS105_2009_11_04
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with syn103E],
. . . . . . . . . . . . . . . . . . . . . [swine HK 2001 with 100N, syn258F],
. . . . . . . . . . . . . . . . . . . . . [swine Colorado 2001 (ATg)],
. . . . . . . . syn338G,
. . . . . . . . HA truncated after aa348),
. . . . KoreaAF21786_42M_2011_01_04_VxX (
. . . . . . . . syn1A (GCc) [JapanShizuoka20_2011_01_18
. . . . . . . . . . . . . . . . . . . . . . . . with 188T (Acc),
. . . . . . . . . . . . . . . . . . . Chungbuk2826_2010_12_14
. . . . . . . . . . . . . . . . . . . . . . . . with 188T (Acc),
. . . . . . . . . . . . . . . . . . . Gyeonggi2623_2010_11_24
. . . . . . . . . . . . . . . . . . . . . . . . with 188T (Acc),
. . . . . . . . . . . . . . . . . . . Georgia4573_2009_12_23],
. . . . . . . . syn18T (ACc),
. . . . . . . . syn31H (CAt),
. . . . . . . . 100N,
. . . . . . . . 122N,
. . . . . . . . 188T (Acc) [H7N3, H7N7],
. . . . . . . . . . . . . . . . . . [Unique to PF11 Korea 2010 (2)],
. . . . . . . . 238D,
. . . . . . . . syn271S (TCg) [OzDarwin43_2010_07_23
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with 166N, syn239P,
. . . . . . . . . . . . . . . . . . . . . CalifSD_INS105_2009_11_04
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with syn103E],
. . . . . . . . . . . . . . . . . . . . . [swine HK 2001 with 100N, syn258F],
. . . . . . . . . . . . . . . . . . . . . [swine Colorado 2001 (ATg)],
. . . . . . . . syn338G,
. . . . . . . . 377K,
. . . . . . . . HA truncated after aa386),
. . . . Chungbuk2826_2010_12_14 (
. . . . . . . . syn1A (GCc) [Georgia4573_2009_12_23],
. . . . . . . . syn31H (CAt) [31 GISAID],
. . . . . . . . . . . . . . . . . . . [Conserved Asia],
. . . . . . . . 100N,
. . . . . . . . 173R [19 GISAID],
. . . . . . . . 188T (Acc) [H7N3, H7N7],
. . . . . . . . . . . . . . . . . . [Unique to PF11 Korea 2010 (2)],
. . . . . . . . syn271S (TCg) [OzDarwin43_2010_07_23
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with 166N, syn239P,
. . . . . . . . . . . . . . . . . . . . . CalifSD_INS105_2009_11_04
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with syn103E],
. . . . . . . . . . . . . . . . . . . . . [swine HK 2001 with 100N, syn258F],
. . . . . . . . . . . . . . . . . . . . . [swine Colorado 2001 (ATg)],
. . . . . . . . syn327I (ATc) mix wt [43 GISAID],
. . . . . . . . syn338G,
. . . . . . . . HA truncated after aa348),
. . . . Gyeonggi2623_2010_11_24 (
. . . . . . . . syn1A (GCc) [Georgia4573_2009_12_23],
. . . . . . . . 100N,
. . . . . . . . syn108L (TTa) [15 GISAID],
. . . . . . . . . . . . . . . . . . . [US, US Military],
. . . . . . . . . . . . . . . . . . . [Sri Lanka 2010, China],
. . . . . . . . . . . . . . . . . . . [Canada, Europe, Abu Dhabi],
. . . . . . . . . . . . . . . . . . . [swine Asia, swine US],
. . . . . . . . 158E mix wt,
. . . . . . . . syn175E [83 GISAID
. . . . . . . . . . . . . . . [Worldwide, primarily 2009],
. . . . . . . . . . . . . . . [2010 Australia, Costa Rica, China Widespread],
. . . . . . . . 188T (Acc) [H7N3, H7N7],
. . . . . . . . . . . . . . . . . . [Unique to PF11 Korea 2010 (2)],
. . . . . . . . syn239P (CCa) [H3N8, H9N2],
. . . . . . . . . . . . . . . . . . . . . [30 GISAID],
. . . . . . . . . . . . . . . . . . . . . [Widespread US, US Military],
. . . . . . . . . . . . . . . . . . . . . [Asia, Russia, Europe],
. . . . . . . . syn258F (TTt) [16 GISAID],
. . . . . . . . . . . . . . . . . . . . . [US, US Military],
. . . . . . . . . . . . . . . . . . . . . [South America],
. . . . . . . . . . . . . . . . . . . . . [Japan, Russia, Europe],
. . . . . . . . . . . . . . . . . . . . . [swine HK 2001],
. . . . . . . . syn271S (TCg) [OzDarwin43_2010_07_23
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with 166N, syn239P,
. . . . . . . . . . . . . . . . . . . . . CalifSD_INS105_2009_11_04
. . . . . . . . . . . . . . . . . . . . . . . . . . . . with syn103E],
. . . . . . . . . . . . . . . . . . . . . [swine HK 2001 with 100N, syn258F],
. . . . . . . . . . . . . . . . . . . . . [swine Colorado 2001 (ATg)],
. . . . . . . . syn337A (GCa) [H5N1 Avian Japan 2007-2008],
. . . . . . . . . . . . . . . . . . . . . [Unique to PF11],
. . . . . . . . syn338G,
. . . . . . . . HA truncated after aa348),
. . . . H7N3 Extensive in Avian species,
. . . . H7N7 Extensive in Avian species:
. . . . . . . . . Egypt 2004-2006, Sweden 2005, Italy 2006 & Poland 2009,
. . . . . . . . . Extensive in late 20th century Equine species.
188T (AcT)
. . . . SpainCastLaManchaRR7050_62F_2011_01_07 (
. . . . . . . . HA truncated prior to aa23,
. . . . . . . . syn55L,
. . . . . . . . 181D [Unique to GISAID],
. . . . . . . . 188T,
. . . . . . . . 199G [Unique to GISAID],
. . . . . . . . 219T,
. . . . . . . . 225G,
. . . . . . . . syn264A,
. . . . . . . . HA truncated after aa335),
. . . . IranKaraj5327_2010_12_06,
. . . . UKEngland5040499_2010_12_f (
. . . . . . . . 100N,
. . . . . . . . 188T,
. . . . . . . . 213S,
. . . . . . . . syn338G,
. . . . . . . . 377K,
. . . . . . . . 454N,
. . . . . . . . syn537S)
. . . . UKWhiteChapel4880374_2M_2010_11_28,
. . . . OzVictoria670_2010_11_14,
. . . . JapanKanagawa74_2010_10_16,
. . . . ThailandSN_0116_2010_10,
. . . . OzPerth219_2010_09_21,
. . . . OzSydney217_2010_09_19,
. . . . OzPerth198_2010_09_15,
. . . . OzSydney220_2010_09_12,
. . . . GhanaFS10_4259_2010_08_27,
. . . . GhanaFS10_4241_2010_08_25,
. . . . OzVictoria833_2010_08_25,
. . . . Johannesburg119_2010_08_19,
. . . . OzBrisbane209_51F_2010_08_09,
. . . . India5103_2010_08_09_VxX (
. . . . . . . . syn60I,
. . . . . . . . 100N,
. . . . . . . . 132D mix wt,
. . . . . . . . syn135V,
. . . . . . . . 186P,
. . . . . . . . 188T,
. . . . . . . . syn338G,
. . . . . . . . 377K,
. . . . . . . . 450K [Rare to GISAID]
. . . . . . . . . . . [GreeceAthensINS122_2009_12_09
. . . . . . . . . . . . . . . . with syn275V, syn380N, syn473K],
. . . . . . . . 454N),
. . . . Johannesburg115_2010_08_06,
. . . . Florida14_24M_2010_08_05 (
. . . . . . . . 100N [H7N3, H7N7, H9N2],
. . . . . . . . syn161Y [H3N8 2009, H6N1, H9N2],
. . . . . . . . 188T [H6N1, H7N7],
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . 377K [H9N2],
. . . . . . . . 442I mix,
. . . . . . . . 454N [H7N3, H7N7, H9N2]),
. . . . Johannesburg115_2010_08_06,
. . . . Florida14_2010_08_05,
. . . . OZVictoria512_2010_07_30,
. . . . OzBrisbane69_2010_07_27,
. . . . Thailand34_9912_2010_07_14,
. . . . Thailand34_9937_2010_07_14,
. . . . NZChristchurch15_2010_07_12,
. . . . India5107_2010_06_28 (
. . . . . . . . syn60I,
. . . . . . . . 100N,
. . . . . . . . syn135V,
. . . . . . . . 188T,
. . . . . . . . syn338G,
. . . . . . . . 377K,
. . . . . . . . 454N),
. . . . India8910_2010-05-08,
. . . . swThaiCURA75_2010_01,
. . . . Brunei218_2010,
. . . . JapanSendaiTU617_2009,
. . . . H6N1 dkHK202_1977, dkKOS17_2003,
. . . . H7N7 extensive including human fatality
188N (AaT)
. . . . TexasJMS414_2010_02_04 (
. . . . . . . . 33A, syn38D, 188N, 275A, 324I, syn413K),
. . . . SC16, SC31, NY3502, ME15, CatS1187, Milan433,
. . . . Bilthoven4360903023, Kaifu4142,
. . . . Thessaloniki228_2010_01_13 (2E, 188N, 291P, 296H),
. . . . Kavala219_2010_01_12 (2E, 28P, 188N, 225G, 296H),
. . . . Japan extensive incl. Niigata700 (159B, 188N), China,
. . . . swHK_NS1809_2009_12_03 (188N, 189T),
. . . . swHK_NS1810_2009_12_03,
. . . . S5, H5N1
188I (AtT)
. . . . Growing in US on cross-linked background (4) including:
. . . . WiscS1416_2009_10_26_xL (
. . . . . . . . 22I, syn157K, 176I, 188I, 231K, 277N, syn366A [tn]),
. . . . BZ_SaoPaulo53823_2009_08_01_f (186S, 188I),
. . . . H1N1 (1943, 46, 51)
189A synonymous (GCc)
. . . . Georgia01_2010, Georgia 2010 (+5),
. . . . AthensINS359_2009_12_26,
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11])
189D (GaT)
. . . . Sydney2054_2009_TmX (
. . . . . . . . 73P, syn108L, 189D mix, 208K, 414I, syn450E),
. . . . Calif_SD193_2009_10_12 (
. . . . . . . .  (189D, 189N, 189T mix), 275A, syn360Q, 377K),
. . . . NewYork5755 (190G, 494K),
. . . . H6N1 mallSweden81_2002,
. . . . H7N7 Delaware 2006 (3)
189N (aaT)
. . . . CalifSD193_2009_10_12 (
. . . . . . . . . . . . . . . . . (189D, 189N, 189T mix), 275A, syn360Q, 377K)
189V (GtT)
. . . . Sydney2503, Texas46172731,
. . . . SingKK081_2010_02_12 (33A, syn49G, syn167S [tn], syn173G, 377K, 554N),
. . . . Sask, H6N1 mallMaryland887_2002
189S (tCT)
. . . . Wisc1434,
. . . . H6N1 dkHK3461_1999
189T (aCT)
. . . . Extensive in US incl NY7020_2009_12_14 (77N),
. . . . on cross-linkage (4) including
. . . . NY6943_2009_12_07_xL (
. . . . . . . . syn131S [Russia, Afghan, Kenya,
. . . . . . . . . . . . . . IndiaPune10278_2009_09,
. . . . . . . . . . . . . . Wisconsin, California,
. . . . . . . . . . . . . . Nicaragua, Greece],
. . . . . . . . syn188S,
. . . . . . . . 189T [H5, H6, H9N2],
. . . . . . . . syn361G [1918, WSN33, tn],
. . . . . . . . syn413K [H9N2]),
. . . . NY6530_2010_02_21 (
. . . . . . . . . . . . syn31H, syn64I, syn116R, syn169I,
. . . . . . . . . . . . 189T, 200S, 275I, 286E),
. . . . CalifVRDL100 . . . (119M [H7N7], 189T, syn207S [H2, H7N7], 377K [H9N2]),
. . . . CalifVRDL3_2010_01_19 (
. . . . . . . . . . . . . . . . . 119M [H7N7], 189T, syn207S [H2, H7N7], 377K [H9N2],
. . . . . . . . . . . . . . . . . syn477T [H3N8]),
. . . . CalifVRDL12_2010 (119M [H7N7], 189T, syn207S [H2, H7N7], 377K [H9N2],
. . . . . . . . . . . . . . . . . syn477T [H3N8]),
. . . . CalifVRDL14_2010 (119M [H7N7], 189T, syn207S [H2, H7N7], 377K [H9N2],
. . . . . . . . . . . . . . . . . syn477T [H3N8]),
. . . . CalifVRDL121_2009_12_15_xL (
. . . . . . . . . . . . . . . . . 189T, 264S, syn272D, 277Y, syn413K [H9N2], syn419L),
. . . . CalifVRDL122_2009_12_15 (
. . . . . . . . . . . . . . . . . 119M [H7N7], 189T, syn207S [H2, H7N7], 377K [H9N2]),
. . . . CalifSD197_2009_10_21 (189T, 275A, 377K),
. . . . CalifSD193_2009_10_12 (
. . . . . . . . . . . . . . . . . (189D, 189N, 189T mix), 275A, syn360Q, 377K)
. . . . Michigan28_2009_12_28_xL (syn103E [H9N2], 189T, 324I),
. . . . WiscD0459_2009_12_18_xL (
. . . . . . . . . . . . syn13N [S5, 1918], syn32S [tn], 189T, 324I,
. . . . . . . . . . . . syn413K [H9N2], syn474C [all, swOR], 499K [H5N1]),
. . . . Wisconsin02_2010_02_17 (
. . . . . . . . . . . . 80P, 189T, 275I, syn285P, syn334G, 377K),
. . . . Ontario328474,
. . . . MexicoCity025_2009_05_01 (35I [H5N1], syn302T, syn454L),
. . . . Aswan2288, China,
. . . . GXFangcheng183_2010 (
. . . . . . . . 162S, syn283Q [H9N2], syn374A [H5], 377K [H9N2]),
. . . . Taiwan26_2010_02_11 (
. . . . . . . . 12T, 189T, syn305K),
. . . . swHK_NS1809_2009_12_03 (188N),
. . . . 1918,
. . . . H5N1 2009,
. . . . H6N1,
. . . . H9N2 2008
190D synonymous (GAt)
. . . . Nebraska02_2010_03_11 (
. . . . . . . . 42E, 145R, syn190D, syn218A,
. . . . . . . . 377K [H9N2], syn428L, 523A),
. . . . UkrZakarpatska830_2009_11_12_f  (
. . . . . . . . syn48R [Norway1359_2009_05_16,
. . . . . . . . . . . . .  IndiaPune10278_2009_09],
. . . . . . . . syn92T,
. . . . . . . . syn168Y [H9N2],
. . . . . . . . syn190D,
. . . . . . . . 225G mix,
. . . . . . . . syn327I [Vienna291_2009_11_19],
. . . . . . . . truncated HA after aa395,
. . . . . . . . with NA syn407V),
. . . . Milan326_2009_10_14  (
. . . . . . . . . . . . syn196Q, 225E, 268L, syn286K, 298V [H3N8, H9N2]),
. . . . AfghanN09833_2009_08,
. . . . Rome676_2009_10_28 (242E), Rome677_2009_10_31
. . . . KenyaNairobi1_2010_01_21_bris (
. . . . . . . . syn62G,
. . . . . . . . syn70C [H2N3, H3N8, H5, H6, H7N7],
. . . . . . . . 87N,
. . . . . . . . syn107Q,
. . . . . . . . syn190D,
. . . . . . . . syn325P,
. . . . . . . . 377K [H9N2],
. . . . . . . . syn456L),
. . . . 1918, H1N1 (1943, 51)
. . . . H6N1
190N (aAC)
. . . . Slovenia2589
190G (GgC)
. . . . NewYork5755 (189D [H6N1], 494K),
. . . . SingaporeON1138 (syn181G),
. . . . NagaHA10_5_2010_01_12_13F (syn193S, 297V, 307S, syn471Y),
. . . . NagaHA10_6_2010_01_12_2M (syn134G [tn], 206S, syn292S, 
. . . . . . . . . . . . . . . . . . . . . . . . syn413K [H9N2],syn482V, 550K),
. . . . NagaHA10_9_2010_01_18_0F (syn16T, 174R, 200T),
. . . . ShanghaiPudongxin1335_2010 mix (131P, 141N, 190G, 377K, 409S)
190Y (tAT)
. . . . UKEngland4500186_2010_11_f  (
. . . . . . . . 137T,
. . . . . . . . 186P,
. . . . . . . . 190Y [Avian H6N1],
. . . . . . . . . . [SwedenMalmoe1_2010_01_01_xL
. . . . . . . . . . . . with 377K, syn413K,
. . . . . . . . . . Brasil7450_2009_07_22
. . . . . . . . . . . . with 157E mix wt],
. . . . . . . . 377G [H2N3],
. . . . . . . . . . . . . [H5N1 Human Egypt Preschool 2009, H5N1 Human Indonesia 2005],
. . . . . . . . . . . . . [H6N1 2009],
. . . . . . . . . . . . . [US Swine 1957-1978],
. . . . . . . . . . . . . [IranBandarAbbas5096_2010_10_02
. . . . . . . . . . . . . . . . . . . with 137T, 186P, syn474C,
. . . . . . . . . . . . . Florida13_2010_08_02
. . . . . . . . . . . . . . . . . . . with 137T, 186P, syn474C, 512M,
. . . . . . . . . . . . . . Iowa05_2010_05_04
. . . . . . . . . . . . . . . . . . . with 208K, syn516I,
. . . . . . . . . . . . . . swSouthDakota1_2010_04_27,
. . . . . . . . . . . . . . TexasAF2647_2010_04_11
. . . . . . . . . . . . . . . . . . . with 200S, syn214K, syn276H,
. . . . . . . . . . . . . . swIowa02999_2010_04_01,
. . . . . . . . . . . . . . UtahAF2653_2010_03_14
. . . . . . . . . . . . . . . . . . . with syn253V,
. . . . . . . . . . . . . . North Carolina05_2010_02_24
. . . . . . . . . . . . . . . . . . . with 259V,
. . . . . . . . . . . . . . Kentucky04_2010_02_22
. . . . . . . . . . . . . . . . . . . with syn488D,
. . . . . . . . . . . . . . Minnesota02_2010_02_17
. . . . . . . . . . . . . . . . . . . with 259V, 509D,
. . . . . . . . . . . . . . SouthCarolina01_2010_01_27
. . . . . . . . . . . . . . . . . . . with syn238E, syn488D,
. . . . . . . . . . . . . . AnasPlatBelgium04328_pcs17_2010_01_21
. . . . . . . . . . . . . . . . . . . with syn474C,
. . . . . . . . . . . . . . GermanyAF2208_2010_01_20
. . . . . . . . . . . . . . . . . . . with #1T, 225E,
. . . . . . . . . . . . . . NorthCarolina03_2010_01_20
. . . . . . . . . . . . . . . . . . . with 225G mix, 259V, syn275V,
. . . . . . . . . . . . . . NewMexico01_2010_01_05
. . . . . . . . . . . . . . . . . . . with 430I, syn445V, syn490P,
. . . . . . . . . . . . . . swThailandCU_CHK4_2009_01
. . . . . . . . . . . . . . . . . . with #1T, 0A, 189T, syn338G,
. . . . . . . . . . . . . . . . . . . . . . syn451K, syn474C, syn456L, syn529L,
. . . . . . . . . . . . . . Moldova5053_2009_12_11
. . . . . . . . . . . . . . . . . . with 173R, 176I, 225A, 225G mix wt, syn286K,
. . . . . . . . . . . . . . WiscD0128_2009_11_15
. . . . . . . . . . . . . . . . . . . with syn297N, syn343G, 471H,
. . . . . . . . . . . . . . KoreaAF2411_2009_11_11
. . . . . . . . . . . . . . . . . . . with 237I, syn286K,
. . . . . . . . . . . . . . England94840077_2009_11
. . . . . . . . . . . . . . . . . . . with 259T,
. . . . . . . . . . . . . . BahrainN11892_2009_10
. . . . . . . . . . . . . . . . . . . with 208K,
. . . . . . . . . . . . . . Nevada16_2009_10_02
. . . . . . . . . . . . . . . . . . . with 464R mix wt,
. . . . . . . . . . . . . . Tasmania2005_2009_07_03
. . . . . . . . . . . . . . . . . . . with 289M,
. . . . . . . . . . . . . . Texas42303371_2009
. . . . . . . . . . . . . . . . . . . with syn456L, syn507K],
. . . . . . . . syn408E,
. . . . . . . . syn474C,
. . . . . . . . 512M,
. . . . . . . . 530I),
. . . . SwedenMalmoe1_2010_01_01_xL (
. . . . . . . . 190Y mix wt [Avian H6N1],
. . . . . . . . 324I,
. . . . . . . . 377K,
. . . . . . . . syn413K),
. . . . Brasil7450_2009_07_22 (
. . . . . . . . 157E mix wt,
. . . . . . . . 190Y [Avian H6N1]),
. . . . H6N1 (tTG)
191P (CcA)
. . . . Habana2687_2009 (syn218A, 221T)
191R (CgA)
. . . . Guangdong0872_2009_12_27 (
. . . . . . . . HA truncated until aa6,
. . . . . . . . syn82I,
. . . . . . . . syn130E,
. . . . . . . . 191R,
. . . . . . . . 377K,
. . . . . . . . syn455Q),
. . . . Chengdu18 (131P),
. . . . Guangdong28 (192H, 199N)
192Q synonymous (CAg)
. . . . Nebraska01_2010_01_28 (
. . . . . . . . syn19V,
. . . . . . . . 100N,
. . . . . . . . syn137A,
. . . . . . . . syn159N [H3N8, H9N2],
. . . . . . . . syn192Q, syn259A, syn270I, syn368L,
. . . . . . . . 377K [H9N2],
. . . . . . . . syn485G [Orenburg2974_2009_11_16_xL]),
. . . . Bonn277_2009_11_19 (syn167S, syn192Q, syn367D, 377K),
. . . . RomaISS50 (227V),
. . . . H1N1 (1943, 46)
192H (CAt)
. . . . GuangdongSWL28 (191R, 199N),
. . . . Avian H2N3 (agt), H3N8 (act), H6N1 (aAt, gat, gct)
193S synonymous (AGc)
. . . . US 2010 (4),
. . . . SouthCarolina18_2009_09_16_VxX (
. . . . . . . . 159D,
. . . . . . . . syn193S [H3N8, H6N1],
. . . . . . . . 206T,
. . . . . . . . 224K,
. . . . . . . . 324I,
. . . . . . . . syn379T [H5N1],
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . IndiaBlore236_2009_06_xL with 226R,
. . . . . . . . . . Texas45131774_2009_09_13,
. . . . . . . . . . FL_Pen210_2009_11_10]),
. . . . CalifVRDL2_2010_01_11 (
. . . . . . . . syn121P,
. . . . . . . . syn193S [H3N8, H6N1],
. . . . . . . . 206T,
. . . . . . . . syn297N,
. . . . . . . . 377K [H9N2],
. . . . . . . . 502K [UkrTernopilN10_2009_10_28_xL_f with 225G,
. . . . . . . . . . . Oz_Victoria800_2010_06_02,
. . . . . . . . . . . SingGP2362_2010_05_18,
. . . . . . . . . . . Scandinavia (7),
. . . . . . . . . . . California33_2009_08_06,
. . . . . . . . . . . Michigan21_2009_08_07,
. . . . . . . . . . . SouthCarolina36_2009_09_02,
. . . . . . . . . . . SouthCarolina38_2009_09_17,
. . . . . . . . . . . Haiti534_2009_10_19,
. . . . . . . . . . . AlgeriaG2902_2009_12_09 mix with 225E,
. . . . . . . . . . . Egypt114_2009_12_06 with 225E,
. . . . . . . . . . . JapanPR1070_2009_07_10,
. . . . . . . . . . . ThailandTHB0438_2009_07_28,
. . . . . . . . . . . Jiangyin34_2009_08_16,
. . . . . . . . . . . GuangxiLongan1870_2009_12_16]),
. . . . CalifVRDL9_2010_02_09 (
. . . . . . . . syn32S,
. . . . . . . . syn138A,
. . . . . . . . syn193S [H3N8, H6N1],
. . . . . . . . syn256Y [H6N1],
. . . . . . . . syn283Q [H5, H6, H9N2],
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . 377K [H9N2]),
. . . . CalifVRDL11_2010, CalifVRDL13_2010,
. . . . NM11 (syn454S), NM13,
. . . . Wisc (5), DC_INS28,
. . . . AfghanN10765_2009_09, Milan294, Japan 2010,
. . . . H3N8 AGc aplatBelgium12827_2007,
. . . . H6N1 AGc chkTaiwan0706_2003,
. . . . H9N2 Aac dkViet2009,
. . . . H11Nx Aac dkViet2009
193G (gGT)
. . . . UkrSumy797_2009_11_13_f  (
. . . . . . . . syn2N [SingON2416_2009_12_15,
. . . . . . . . . . . . . MongoliaJP5756_2009_10_15,
. . . . . . . . . . . . . IndiaPune10604_2009_09, et al],
. . . . . . . . 193G,
. . . . . . . . 225G mix,
. . . . . . . . truncated HA with no NA),
. . . . Calif_SD04_2009_10_12 (
. . . . . . . . syn145K, syn148Y, 193G, 377K),
. . . . Texas42173957_2009_06_17 (193G, syn488D),
. . . . Arkansas08 (193G, syn360Q),
. . . . CatS1384_2009_09_17 (
. . . . . . . . 193G, syn325P, syn482V, syn516I),
. . . . HunDaxiang1421_2009 (131P, 259T), AHLuyang1103_2010 (131P),
. . . . AHBaohe137_2010 (131P), AHLuyang1953_2009 (131P),
. . . . H5N1 (gGg), H3N8 (gaT, gac, gaa), H11 (gac, gat)
193K (Aaa)
. . . . swNC13598_2010_03_09_f_xL with 15 HA + 4 NA revisions (
. . . . . . . . . . 57E,
. . . . . . . . . . syn74S [IndiaHyderabad51_2009_05],
. . . . . . . . . . 135I,
. . . . . . . . . . syn158G [H3N8],
. . . . . . . . . . . . . . . . . [Moscow_ION_2009_07_16,
. . . . . . . . . . . . . . . . .NY4748_2009_07 with 163E,
. . . . . . . . . . . . . . . . .Mongolia_Inner01_2009_07_27 with 89G],
. . . . . . . . . . 193K,
. . . . . . . . . . syn212K,
. . . . . . . . . . 264V [Denmark1341 with 158E, 225E],
. . . . . . . . . . 298V [H3N8, H9N2],
. . . . . . . . . . syn314K,
. . . . . . . . . . 364F,
. . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . 414I [H5],
. . . . . . . . . . syn419L,
. . . . . . . . . . syn475D [H5, 1918,WSN33])
193N (AaT)
. . . . WiscD0589_2009_06_03 (
. . . . . . . . syn36L,
. . . . . . . . syn178V (GTa) [IndiaPune10604_2009_09_10 (GTt),
. . . . . . . . . . . . . . . . . . NY6668_2009_11_30 (GTa),
. . . . . . . . . . . . . . . . . . CalifVRDL89_2009_10_17 (GTa), et al],
. . . . . . . . 193N [H3N8, H6N1, H9N2, H11],
. . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . . . . . . . [MoscowOb_ZNF_2009_11_24_xL_f,
. . . . . . . . . . . . . . MoscowOb_STV_2009_11_09_f with 225N,
. . . . . . . . . . . . . . Ivanovo_STV1_2009_11_21 with 225G,
. . . . . . . . . . . . . . IndiaPune6196_2009_08]),
. . . . Washington72_2009_11_25 (
. . . . . . . . syn22V, 35I, syn159N, 193N, syn413K, syn441H),
. . . . HebYuhua1442_2009_12_05 (193N, syn280T, 377K),
. . . . H3N8, H6N1, H9N2, H11
193R (cGT)
. . . . catItaly304678_1_2009_12_17_f,
. . . . tkOntarioFAV110_4_2009 _11_03 (2E, 158E [H3N8, H5N1], 193R,
. . . . . . . . . . . . . . . . . . . . . . 208K, 296H, 512K),
. . . . Origin Unknown
194L (CTC)
. . . . PF11 wt
. . . . H5N1 wt
. . . . S9, S7, M7, S5, WSN33, 1918, Sask
194L synonymous (CTa)
. . . . Japan4081,
. . . . tn,
. . . . H9N2 2008 (tTa),
. . . . H6N1 ckTaiwan1205_2001, tkBC2_1997 (CTa)
194L synonymous (CTt)
. . . . TexasJMS385_2009_12_04 (
. . . . . . . . syn122K, syn194L, syn208R, 324I, syn366A),
. . . . KazAlmaty330_2009_11_17 (
. . . . . . . . 142V, syn194L, HA truncated at aa294),
. . . . KazAlmaty347_2009_11_19 (
. . . . . . . . 124I, 142V, syn194L, HA truncated at aa294),
. . . . KazAlmaty347CX_2009_11_19 (
. . . . . . . . 124I, 142V, syn194L, HA truncated at aa294),
. . . . KazAlmaty352_2009_11_23 (
. . . . . . . . 142V, syn194L, HA truncated at aa294),
. . . . KazAlmaty373_2009_11_28 (
. . . . . . . . 142V, syn194L, HA truncated at aa294),
. . . . CalifVRDL36_2009_09_24 (syn231N, 273K, 377K [H9N2]),
. . . . WiscD0675, WiscD0891, WiscD1237,
. . . . EgyptN11640_2009_10,
. . . . Iran572,
. . . . Iran14068_2009_11_15 (syn331G [H5N1], 377K [H9N2]),
. . . . H5N1,
. . . . H9N2 dkVietnamOIE2327_2009
194I  (aTC)
. . . . NC38E3, VA27, SC18,
. . . . NewHampshire02E3_2010_02_19 (
. . . . . . . . 100N [H9N2],
. . . . . . . . 127L,
. . . . . . . . syn178V,
. . . . . . . . 194I mix,
. . . . . . . . syn270I,
. . . . . . . . 377K [H9N2]),
. . . . Iraq8529E3_2009_09_08_xL (
. . . . . . . . 131L [UkrDnip1175_2009_11_10,
. . . . . . . . . . . . Iraq8531_2009_09_08_xL with 130E],
. . . . . . . . 160L,
. . . . . . . . 194I [H5N1],
. . . . . . . . 298V [H3N8, H6, H9N2],
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn419L [H5N1]),
. . . . CanadaGFA0402_2009_04 (
. . . . . . . . . . . . . . . 86P, syn135G [1918],
. . . . . . . . . . . . . . . 194I [H5N1], syn283Q [H6N1, H9N2],
. . . . . . . . . . . . . . . 324I, 437N, syn456L [H5N1]),
. . . . StPete59, StPete99,
. . . . Thessaloniki788_2010 (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11], 
. . . . . . . . . . . . . . . syn171D [M7, H3N8, H9N2],
. . . . . . . . . . . . . . . syn233Y [H9N2], 324I, 377K [H9N2]),
. . . . Bangladesh3009,
. . . . China (5), HubeWuchang13_2010 mix (syn413K [H9N2]),
. . . . H5N1
195Y (TAT)
. . . . PF11 wt
. . . . H5N1 wt
. . . . S9, S7, M7, WSN33, 1918, tn, Sask
195Y synonymous (TAc)
. . . . Guayaquil4 (206S),
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . tkDeutsche, swDeutsche,
. . . . Avian H2N3,
. . . . H3N8 Avian and Equine emergent,
. . . . H5N1 gsEgyptR4_2007,
. . . . H6N1,
. . . . H7N7 2004-2009,
. . . . H9N2 99%,
. . . . H11 90%
195H (cAT)
. . . . BeijingSE3182_2009_11 (131P, 237A, syn303I, syn337A)
196Q synonymous (CAa)
. . . . GreeceArgos2231_2010_02_03 (
. . . . . . . . syn196Q,
. . . . . . . . 214R,
. . . . . . . . 225E,
. . . . . . . . 285S,
. . . . . . . . 310I,
. . . . . . . . 324I,
. . . . . . . . syn523V),
. . . . Wisc (3) including cross-linkage:
. . . . WiscD0503_2009_11_17_xL (
. . . . . . . . 22I, syn157K, 176I, syn196Q [H5N1],
. . . . . . . . syn413K [H9N2], 481G),
. . . . Moldova (3), Malaysia (2), China,
. . . . Pavia (6),
. . . . Milan326_2009_10_14  (syn190D, 225E, 268L,
. . . . . . . . . . . . . . . . . . . . syn286K, 298V [H3N8, H9N2]),
. . . . Ankara18, NordrheinWestfalen106,
. . . . RussiaChita_8_2009_11_02 (
. . . . . . . . 131P,
. . . . . . . . syn196Q [H2, H5N1],
. . . . . . . . 269V [H9N2, H11],
. . . . . . . . syn359E [H5N1, H7N7, H11],
. . . . . . . . . . . . . . . [FL_Pen210_2009_11_10 with 225E & 300S,
. . . . . . . . . . . . . . RussiaStPeterOb_SEV_2009_08_05,
. . . . . . . . . . . . . . Boston103_2009_06_15]
. . . . . . . . syn542S [H2, H5N1, H9N2]),
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . Avian H2N3,
. . . . H5N1
196H (CAt)
. . . . swAlbertaOTH33_24_2009_05_03 (
. . . . . . . . . . . . . . . . . syn216E [H9N2], 223M, syn456L [H5N1])
196L (CtG)
. . . . GreeceLivadia1851_2010_01_26 (
. . . . . . . . 132D,
. . . . . . . . syn177L,
. . . . . . . . 196L,
. . . . . . . . syn221P,
. . . . . . . . 222Q,
. . . . . . . . 276Q,
. . . . . . . . 373H,
. . . . . . . . syn420D)
197T (AcT)
. . . . Malaysia4039 (212E mix),
. . . . JapanKobe91873_2009_08,
. . . . swH1N2
198A synonymous (GCc)
. . . . KO_Seoul1870_2009_12_18_TmX
198E (GaA)
. . . . Hiroshima316_2009_09_20 with syn49G
198V (GtA)
. . . . Mongolia_Inner03_2009_09_23,
. . . . Mongolia_Inner04_2009_09_23,
. . . . Malaysia5283, Malaysia9117
198G (GgA)
. . . . BeijingXuanwu1945 (syn28T, 86T, 178M, syn296Q, syn325P),
. . . . Tomsk07 (131P, 225G)
. . . . WSN33,
. . . . H3N8 eqHeilongjiang10_2008,
. . . . H6N1,
. . . . H7N7 ext
199D synonymous (GAc) PF11 swine
. . . . swIL173151_2010_03_18 (202I, syn215P, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2]),
. . . . swIL173153_2010_03_18 (202I, syn215P, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2]),
. . . . swMO15534_2010_03_24 (202I, syn215P, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2]),
. . . . swIL10-001551-1_2009, swIL10-001551-2_2009 (syn163K),
. . . . Avian H1N1,
. . . . Swine H1N1 & non-PF11 Swine emerging lineages,
. . . . H5N1, H9N2
199E (GAa)
. . . . Norway445_2010_04_22 (
. . . . . . . . syn#6L,
. . . . . . . . syn44L,
. . . . . . . . syn106E,
. . . . . . . . 199E,
. . . . . . . . 377K)
199G (GgT)
. . . . SpainCastLaManchaRR7050_62F_2011_01_07 (
. . . . . . . . HA truncated prior to aa23,
. . . . . . . . syn55L,
. . . . . . . . 181D [Unique to GISAID],
. . . . . . . . 188T,
. . . . . . . . 199G [Unique to GISAID],
. . . . . . . . 219T,
. . . . . . . . 225G,
. . . . . . . . syn264A,
. . . . . . . . HA truncated after aa335),
. . . . H2N3 (GGa, GGg)
199N (aAT)
. . . . SC4_2009_05 (35I [H5N1], syn456L [H5N1]),
. . . . GuangdongSWL28,
. . . . Milan80, Milan83, Iceland176,
. . . . S9, S7, M7, Sask, H5 (aCT),
. . . . H1N1 (1943, 46, 51) (aCT)
200A synonymous (GCc)
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . S5
200T (aCA)
. . . . FL31, RomaniaTimis2018, Asia (15), 
. . . . Australia (7) incl:
. . . . Perth500_2010_02_17 (
. . . . . . . . syn15S,
. . . . . . . . syn82I,
. . . . . . . . 87N,
. . . . . . . . syn107Q [tn],
. . . . . . . . 165N,
. . . . . . . . 200T,
. . . . . . . . 373H,
. . . . . . . . syn456L),
. . . . Nara39_2010_2006_07_08_TmX
. . . . . . . . syn82I,
. . . . . . . . 87N,
. . . . . . . . syn107Q [tn],
. . . . . . . . syn139C,
. . . . . . . . 200T,
. . . . . . . . syn325P,
. . . . . . . . HA truncated after aa330),
. . . . Hangzhou04 (86P, 200T, syn283Q [H9N2], 324I),
. . . . Hangzhou06 (74F [H5], 76S, 86P, 200T, syn283Q [H9N2], 324I),
. . . . Hangzhou10 (74F [H5], 76S, 86P, 200T, syn283Q [H9N2], 324I),
. . . . MilanUSHR1, Bilthoven4360901004,
. . . . NepalNP09A294 (414I), KO_Seoul1785_2009_11_TmX,
. . . . ShizuokaC247_2009_11_08,
. . . . Hiroshima647 (syn91G, 122E mix, syn145K, 200T, 210N mix, 219T mix),
. . . . Kobe90597_2010_02_03 (
. . . . . . . . syn138A,
. . . . . . . . 200T,
. . . . . . . . syn429L (cTG) [H3N8, H5N1]),
. . . . Yokosuka8 (syn16T, 158E [H3N8, H5N1], 174R, 200T),
. . . . NagaHA10_9_2010_01_18_0F (syn16T, 174R, 190G, 200T),
. . . . KuwaitN12991_2009_08_24,
. . . . tkDeutsche, swDeutsche,
. . . . H5,
. . . . H9N2
200S (tCA)
. . . . NY1999_2010_01_18,
. . . . . . . . syn169I,
. . . . . . . . 200S,
. . . . . . . . 208K,
. . . . . . . . syn212K,
. . . . . . . . 286E [H6],
. . . . . . . . syn429L (TTa) [H3N8 Avian]),
. . . . NY0461, NY6945, NY5276,
. . . . NC57, WiscD0780, WiscS1338, NJ11,
. . . . DC_INS31 (286E [H6]), SC46 (286E [H6]),
. . . . China,
. . . . Madrid_186 (373H), Odense_177 (286E [H6])
. . . . cheetahCA30954_2009_11_17 (
. . . . . . . . . syn169I [H4], 200S, 286E [H6], syn315L [H5], syn466G [1918])
. . . . catPA30187_2009_11_07 (syn169I [H4], 200S, 286E [H6])
. . . . H11 Avian tCt ext, tCc ext including dkViet2009
201Y (TAT)
. . . . PF11 wt
. . . . H5N1 wt
. . . . S9, S7, M7, S5, WSN33, 1918, tn, Sask
201H (cAT)
. . . . Wisc1140, Darwin2140,
. . . . H3N8 (cAa, cga),
. . . . H7N7 (cta, ctg)
202V synonymous (GTa)
. . . . JiangsuXiaguan1411
202V synonymous (GTc)
. . . . YAMAGATA778, YAMAGATA803,
. . . . swIllinois,
. . . . H1N1 (1943, 46, 51)
202V synonymous (GTg)
. . . . StPeter_VMN_2009_11_19_f (
. . . . . . . . syn238E, syn240G, 275F, 324I,
. . . . . . . . syn413K, syn484N, syn542S [H2, H5, H9N2])
202A (GcT)
. . . . Iowa14_2009_12_07 (
. . . . . . . . 86P,
. . . . . . . . syn109S [H2, H3N8, H9N2, H11],
. . . . . . . . 119M [H7N7],
. . . . . . . . 202A,
. . . . . . . . 274S [Fukuoka_C34_2010_04_09
. . . . . . . .. . . . . . . .. . . . . with 230I (ATa)]),
. . . . Kentucky25 (86P, 119M [H7N7], 202A),
. . . . Brussels243_2009_11_09 (
. . . . . . . . #10T [KyrgyzstanBishkekWR0881T_2009_12_02,
. . . . . . . . . . . . IndiaPune9355_2009_08 with 225G
. . . . . . . . . . . . IndiaPune8489_2009_08 with 237I,
. . . . . . . . . . . . IndiaPune6447_2009_08], 
. . . . . . . . syn44L,
. . . . . . . . 89G [H7N7],
. . . . . . . . syn102E,
. . . . . . . . syn159N [H3N8, H9N2],
. . . . . . . . 202A,
. . . . . . . . 252L,
. . . . . . . . syn297N [H5N1],
. . . . . . . . syn323N,
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn490P (CCg)),
. . . . MXinDRE797 2010 TmX (280A, syn321L, 324I),
. . . . HK34360, Guangdong2282 (131P, 230I, 244I, 275A),
. . . . LiaoningShuncheng1145, LiaoningShuncheng1148 (131P, 230I, 244I, 275A),
. . . . Zhoushan1_2009_11_20 (119L), Zhoushan52_2009_12_19 (syn166K),
. . . . Lishua01P_2009_11_06 (119L), HBSongzi161_2010 (131P, syn493S, syn512R),
. . . . GDLiwan1170_2010 (131P, 271T, 298V [H3N8, H9N2],
. . . . . . . . . . . . . . . . . . . . syn355H [H2, H5N1, H6N1], 375F),
. . . . GDDuanzhou1198_2010 (131P, 271T, 297S, 298V [H3N8, H9N2],
. . . . . . . . . . . . . . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . . . . . . . . . . . . . 375F, syn419L, syn488D),
. . . . Bilthoven4310901550 (89G), Bilthoven4360903104 (89G),
. . . . H9N2 (AcA, AcG)
202I (aTT)
. . . . Boston129_2009_06 (2E, syn226Q, 296H),
. . . . PF11 swine:
. . . . swIL173151_2010_03_18 (syn199D, syn215P, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2]),
. . . . swIL173153_2010_03_18 (syn199D, syn215P, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2]),
. . . . swMO15534_2010_03_24 (syn199D, syn215P, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2])
203S (TcT) Texas46193311_2009_10_19 (189T),
. . . . Non-PF11 Sask, S9, S7, M7, 1918, WSN33
204V synonymous (GTa)
. . . . NY_150_2009_12_07 (
. . . . . . . . syn44L,
. . . . . . . . syn65L [H3N8],
. . . . . . . . syn133K,
. . . . . . . . syn204V [H9N2],
. . . . . . . . syn237V [H3N8, H4], 
. . . . . . . . 377K [H9N2]),
. . . . TexasJMS367_2009_11_12 (
. . . . . . . . 43T,
. . . . . . . . 119M [H6N1, H7N7],
. . . . . . . . syn161Y [H3N8 2009, H6N1, H9N2],
. . . . . . . . syn204V),
. . . . Pennsylvania31 (syn204V, syn237V, et al),
. . . . AfghanN10767_2009_09, AfghanN10974_2009_09,
. . . . KuwaitN13111_2009_09_23,
. . . . Shizuoka1573,
. . . . Ruzhou564_2009_11_29 (syn107Q, syn325P, syn516I),
. . . . Niedersachsen34, RheinlandPfalz86,
. . . . 1918, S9, S7, M7, Sask,
. . . . H9N2 Israel 2009, H9N2 Iran 2008
204M (aTG)
. . . . Goroka16_2010_04_07,
. . . . StPeteOb_SEV_2009_08_05 mix (
. . . . . . . . syn118E,
. . . . . . . . 131P,
. . . . . . . . 204M,
. . . . . . . . syn359E [H5N1, H7N7, H11],
. . . . . . . . . . . . . . . [FL_Pen210_2009_11_10 with 225E & 300S,
. . . . . . . . . . . . . . RussiaChita_8_2009_11_02,
. . . . . . . . . . . . . . Boston103_2009_06_15],
. . . . . . . . syn542S [H2, H5N1, H9N2])
205G synonymous (GGa)
. . . . Texas76C2, Wisc (4),
. . . . Boston120_2009_06 (2E, 296H, syn508L),
. . . . Boston121_2009_06 (2E, 296H, syn508L),
. . . . AfghanN09836_2009_08, TurkeyTR19_2009 (233H),
. . . . Giannitsa2059_2009_11_05 (syn21T, 233H),
. . . . Slovenia5662, Slovenia5711,
. . . . Iceland162M (225G), Iceland162Siat3 (225G),
. . . . SingON1868_2009 (377K),
. . . . SingON2407_2009 (
. . . . . . . . . . 64V, syn102E, syn121P, syn205G, 377K, syn386I, syn494E, 554N),
. . . . Singapore544_2009 (
. . . . . . . . . . 64V, syn102E, 121P, syn205G, 377K, syn386I, syn494E),
. . . . tkOntarioFAV117_1C_2009_12_07 (
. . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . syn55L,
. . . . . . . . . . . . syn152I,
. . . . . . . . . . . . 186P,
. . . . . . . . . . . . syn205G [H6, H7N7],
. . . . . . . . . . . . syn219I,
. . . . . . . . . . . . syn276H [1918, S5],
. . . . . . . . . . . . syn456L [H5N1],
. . . . . . . . . . . . 463V,
. . . . . . . . . . . . syn486T,
. . . . . . . . . . . . 523A),
. . . . tkDeutsche, swDeutsche,
. . . . S5, H3N8 (tCa), H9N2 (GCa), H6N1 (GGa), H7N7 (GGa)
205E (GaG)
. . . . BadenWurttemberg8_2010, Alabama03_2010_03_01 mix,
. . . . ShanghaiPudongxin1335_2010 mix (131P, 141N, 190G, 377K, 409S),
. . . . ShizuokaC247_2009_11_08
. . . . H11 (Gat), H7N7 (Gaa), H7N7 dkVictoria1976 (GaG)
205W (tGG)
. . . . CzechBrno216_2009_11_26,
. . . . Brno216_2009,
. . . . IndiaDhule9433_2009_08 (
. . . . . . . . #12E,
. . . . . . . . syn2N [UkrSumy797_2009_11_13_f,
. . . . . . . . . . . . . MongoliaJP5756_2009_10_15,
. . . . . . . . . . . . . SingON2416_2009_12_15,
. . . . . . . . . . . . . IndiaPune10604_2009_09, et al],
. . . . . . . . syn152I,
. . . . . . . . 176I,
. . . . . . . . 205W,
. . . . . . . . 206S,
. . . . . . . . 252L (cTG) [Maryland03_2010_01_13 (tTG),
. . . . . . . . . . . . . . . Guangdong2361_2009_11_25 (tTG)],
. . . . . . . . 296H,
. . . . . . . . syn348V [Yaroslavl_CHMV_2009_11_10_f with 225G,
. . . . . . . . . . . . . . Yakutsk_EAV_2009_11_18,
. . . . . . . . . . . . . . BZ_SaoPaulo53823_2009_08_01_f,
. . . . . . . . . . . . . . Eng662_2009_08],
. . . . . . . . syn386I [1918, Unique to PF11])
206A CatS1161
206S (TCA) Extensive
. . . . Athens272_2009_12_15 (
. . . . . . . . 35I,
. . . . . . . . syn61A,
. . . . . . . . 206S,
. . . . . . . . 275I,
. . . . . . . . 298V,
. . . . . . . . syn456L,
. . . . . . . . syn489Y),
. . . . Arizona02E2_2009_04_26 (
. . . . . . . . 34D [Orenburg2974_2009_11_16_xL],
. . . . . . . . 206S,
. . . . . . . . syn456L),
. . . . Kansas03_2009_04_24_GQ117062 (
. . . . . . . . #1T,
. . . . . . . . syn161Y [H3N8 2009, H6N1, H9N2],
. . . . . . . . 206S,
. . . . . . . . syn456L),
. . . . IndiaHyderabad51_2009_05 (
. . . . . . . . 1T,
. . . . . . . . syn74S [swNC13598_2010_03_09_xL_f
. . . . . . . . . . . . . . . . . . . . . . with 15 HA + 4 NA revisions],
. . . . . . . . syn144A (GCc) [Rome632_2009_11_23 (GCg)],
. . . . . . . . 206S),
. . . . IndiaPune10604_2009_09 (
. . . . . . . . syn2N [UkrSumy797_2009_11_13_f,
. . . . . . . . . . . . . MongoliaJP5756_2009_10_15,
. . . . . . . .. . . . . SingON2416_2009_12_15],
. . . . . . . . syn50V [TexasJMS391_2009_12_23,
. . . . . . . . . . . . . . TexasJMS413_2010_02_03,
. . . . . . . . . . . . . . SouthCarolina02E3_2010_03_05],
. . . . . . . . syn178V (GTt) [NewHampshire02E3_2010_02_19 (GTa)],
. . . . . . . . 206S,
. . . . . . . . 296H,
. . . . . . . . syn348V [Yaroslavl_CHMV_2009_11_10_f with 225G,
. . . . . . . . . . . . . . Yakutsk_EAV_2009_11_18,
. . . . . . . . . . . . . . BZ_SaoPaulo53823_2009_08_01_f,
. . . . . . . . . . . . . . Eng662_2009_08],
. . . . . . . . syn485G [Nebraska 01_2010_01_28,
. . . . . . . . . . . . . . Orenburg2974_2009_11_16_xL,
. . . . . . . . . . . . . . NagasakiHA10_22_2010_03_01]),
. . . . IndiaPune6196_2009_08 (
. . . . . . . . #12E,
. . . . . . . . syn2N [UkrSumy797_2009_11_13_f,
. . . . . . . . . . . . . MongoliaJP5756_2009_10_15,
. . . . . . . .. . . . . SingON2416_2009_12_15],
. . . . . . . . syn152I,
. . . . . . . . 206S,
. . . . . . . . 296H,
. . . . . . . . syn300P (CCt) [H5N1, H6N1, H7N3, H7N7],
. . . . . . . . . . . . . . . . . [Virginia24_2009_06_03 (CCt),
. . . . . . . . . . . . . . . . . NY0352_2009_12_27 (CCt),
. . . . . . . . . . . . . . . . . SingON2416_2009_12_15 (CCa),
. . . . . . . . . . . . . . . . . Vietnam2043_2009_12_01_TmX (CCa),
. . . . . . . . . . . . . . . . . HunanFur129_2010_01_13 (CCa),
. . . . . . . . . . . . . . . . . Slovenia5613_2009_12 (CCa),
. . . . . . . . . . . . . . . . . Minnesota40_2009_11_19 (CCa) w syn252V],
. . . . . . . . 342R,
. . . . . . . . syn348V [Yaroslavl_CHMV_2009_11_10_f with 225G,
. . . . . . . . . . . . . . Yakutsk_EAV_2009_11_18,
. . . . . . . . . . . . . . BZ_SaoPaulo53823_2009_08_01_f,
. . . . . . . . . . . . . . Eng662_2009_08],
. . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . . . . . . . [MoscowOb_ZNF_2009_11_24_xL_f,
. . . . . . . . . . . . . . MoscowOb_STV_2009_11_09_f with 225N,
. . . . . . . . . . . . . . Ivanovo_STV1_2009_11_21 with 225G,
. . . . . . . . . . . . . . WiscD0589_2009_06_03]),
. . . . IndiaPune807_2009_07 (
. . . . . . . . #12E,
. . . . . . . . syn2N [UkrSumy797_2009_11_13_f ,
. . . . . . . . . . . . . MongoliaJP5756_2009_10_15,
. . . . . . . .. . . . . SingON2416_2009_12_15],
. . . . . . . . 100Q [Unique to PF11],
. . . . . . . . syn104L [CalifVRDL132_2009_12_30,
. . . . . . . . . . . . . . . Texas45122538_2009_09_12,
. . . . . . . . . . . . . . . WiscD0410_2009_09_24,
. . . . . . . . . . . . . . . WiscD1355_2009_09_21],
. . . . . . . . 206S,
. . . . . . . . 296H,
. . . . . . . . syn348V [Yaroslavl_CHMV_2009_11_10_f with 225G,
. . . . . . . . . . . . . . Yakutsk_EAV_2009_11_18,
. . . . . . . . . . . . . . BZ_SaoPaulo53823_2009_08_01_f,
. . . . . . . . . . . . . . Eng662_2009_08],
. . . . . . . . 461E [Unique to PF11]),
. . . . Yakutsk_EAV_2009_11_18 (
. . . . . . . . syn49G,
. . . . . . . . syn164L [1918],
. . . . . . . . 206S [Yaro_CHMV_2009_11_10_f  (224K & 225G)],
. . . . . . . . 286N [H3N8],
. . . . . . . . . . .  [Yaro_CHMV],
. . . . . . . . 296H [Yaro_CHMV],
. . . . . . . . syn348V [Yaro_CHMV,
. . . . . . . . . . . . . . . IndiaPune10604_2009_09,
. . . . . . . . . . . . . . . BZ_SaoPaulo53823_2009_08_01_f,
. . . . . . . . . . . . . . . Eng662_2009_08],
. . . . . . . . syn429L (TTa) [H3N8 Avian, 1918, WSN33, S5, M7],
. . . . . . . . syn448L [S9],
. . . . . . . . . . . . .  [Yaro_CHMV],
. . . . . . . . syn490P [S5, tn],
. . . . . . . . . . . . .  [Yaro_CHMV],
. . . . . . . . syn511T [Yaro_CHMV],
. . . . . . . . syn542S [H2, H5, H9N2],
. . . . . . . . . . . . .  [Yaro_CHMV]),
. . . . swIowa35572_2009_12_16 (
. . . . . . . . 206S, 296H, syn301I, syn307P,
. . . . . . . . syn372Q [H2, H3N8, H4, H5, H6, H7N3, H7N7, H9N2, H11]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . IndiaBlore236_2009_06_xL with 226R,
. . . . . . . . . . . . . . Ulyanovsk_SHTA_2009_10_31_f_225N,
. . . . . . . . . . . . . . Orenburg2974_2009_11_16_xL,
. . . . . . . . . . . . . . Russia fatal extensive,
. . . . . . . . . . . . . . NagasakiHA10_22_2010_03_01]),
. . . . BZ_SaoPaulo2303_2009_06_01 (
. . . . . . . . 206S, 454N),
. . . . MilanUHSR1_2009_05_21 (
. . . . . . . . 86P, 200T, 206S, 454N),
. . . . Finland554_2009_05_26 (
. . . . . . . . 206S, 454N),
. . . . MDSilverSpringSP510_2009_06_18 (
. . . . . . . . #12E, 206S, 296H, 454N),
206T (ACA) Extensive
. . . . NewJersey01_2010_01_01 (
. . . . . . . . 206T,
. . . . . . . . 324I,
. . . . . . . . 377K [H9N2],
. . . . . . . . 488N [H3N8 2009, H6, H9N2, Nanjing1_2010_06_30]),
. . . . NY5083_2009_10_13 (
. . . . . . . . 34D [Orenburg2974_2009_11_16_xL],
. . . . . . . . 143E,
. . . . . . . . 206T,
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . syn391T),
. . . . NY6809_2009_11_30 (
. . . . . . . . 34D [Orenburg2974_2009_11_16_xL], 
. . . . . . . . 124N,
. . . . . . . . 206T,
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw]),
. . . . NY4566_2009_07_08 (
. . . . . . . . syn71E [H6N1],
. . . . . . . . . . . . [WiscD0675_2009_10_12,
. . . . . . . . . . . . WiscD0891_2009_09_26,
. . . . . . . . . . . . WiscD1237_2009_09_22,
. . . . . . . . . . . . Netherlands1324_2009_11_10 with 225E,
. . . . . . . . . . . . EuropeGeorgia670_2010_02_04,
. . . . . . . . . . . . Greece384_2009_07_01,
. . . . . . . . . . . . MoscowOb_STV_2009_11_09_f with 225N,
. . . . . . . . . . . . MoscowOb_ZNF_2009_11_24_xL_f,
. . . . . . . . . . . . Astrakhan_CHRM_2009_11_24_xL_f,
. . . . . . . . . . . . Voronezh01_2009_11_30_xL with 225G,
. . . . . . . . . . . . Ivanovo_STV1_2009_11_21 with 225G,
. . . . . . . . . . . . Ulyanovsk_OAA_2009_11_21,
. . . . . . . . . . . . Russia19_2009_11_01_xL,
. . . . . . . . . . . . Russia149_2009_11_01_xL,
. . . . . . . . . . . . GuangxiQinnan133_2010_01_13],
. . . . . . . . 206T,
. . . . . . . . syn308P),
. . . . NY0352_2009_12_27 (
. . . . . . . . 206T,
. . . . . . . . syn300P (CCt) [H5N1, H6N1, H7N3, H7N7],
. . . . . . . . . . . . . . . . . [IndiaPune6196_2009_08,
. . . . . . . . . . . . . . . . Virginia24_2009_06_03],
. . . . . . . . 377K [H9N2]),
. . . . Virginia24_2009_06_03 (
. . . . . . . . 206T,
. . . . . . . . syn300P (CCt) [H5N1, H6N1, H7N3, H7N7],
. . . . . . . . . . . . . . . . . [IndiaPune6196_2009_08,
. . . . . . . . . . . . . . . . NY0352_2009_12_27],
. . . . Kansas26_2009_11_03 (
. . . . . . . . 206T,
. . . . . . . . syn354Y,
. . . . . . . . syn505G,
. . . . . . . . syn513I [Orenburg2974_2009_11_16_xL,
. . . . . . . . . . . . . . Texas46201823_2009_10_20]),
. . . . NorthCarolina59M1IR_2009_11_07_xL (
. . . . . . . . 155I,
. . . . . . . . 274Q,
. . . . . . . . 298V,
. . . . . . . . syn413K [H9N2],
. . . . . . . . syn419L (CTa) [Utah42_2009_07_24_88,
. . . . . . . . . . . . . . . . . . . Utah42_2009_07_24_90],
. . . . . . . . syn429L (cTG) [Utah42_2009_07_24_88,
. . . . . . . . . . . . . . . . . . . Utah42_2009_07_24_90],
. . . . . . . . syn512R),
. . . . WiscD0401_2009_12_08 (
. . . . . . . . 46E,
. . . . . . . . syn120F,
. . . . . . . . syn151L,
. . . . . . . . syn161Y [H3N8 2009, H6N1, H9N2],
. . . . . . . . 206T,
. . . . . . . . 253I,
. . . . . . . . 377K [H9N2],
. . . . . . . . syn508L),
. . . . WiscD1237_2009_09_22 (
. . . . = WiscD0891_2009_09_26
. . . . = WiscD0675_2009_10_12
. . . . . . . . 51T [SingSS004_2010_04 with 225G],
. . . . . . . . syn71E [H6N1],
. . . . . . . . . . . . [NY4566_2009_07_08,
. . . . . . . . . . . . WiscD1237_2009_09_22,
. . . . . . . . . . . . Netherlands1324_2009_11_10 with 225E,
. . . . . . . . . . . . EuropeGeorgia670_2010_02_04,
. . . . . . . . . . . . Greece384_2009_07_01,
. . . . . . . . . . . . MoscowOb_STV_2009_11_09_f with 225N,
. . . . . . . . . . . . MoscowOb_ZNF_2009_11_24_xL_f,
. . . . . . . . . . . . Astrakhan_CHRM_2009_11_24_xL_f,
. . . . . . . . . . . . Voronezh01_2009_11_30_xL with 225G,
. . . . . . . . . . . . Ivanovo_STV1_2009_11_21 with 225G,
. . . . . . . . . . . . Ulyanovsk_OAA_2009_11_21,
. . . . . . . . . . . . Russia19_2009_11_01_xL,
. . . . . . . . . . . . Russia149_2009_11_01_xL,
. . . . . . . . . . . . GuangxiQinnan133_2010_01_13],
. . . . . . . . syn194L [H5N1, H9N2],
. . . . . . . . syn249G,
. . . . . . . . 324I,
. . . . . . . . syn360A),
. . . . Georgia23_2009_09_11_xL_TmX (
. . . . . . . . 206T,
. . . . . . . . syn413K [H9N2],
. . . . . . . . 504E [H6N1, H9N2, H11]
. . . . . . . . . . . . [Australia35_2009_07_24
. . . . . . . . . . . . . . . . . with 89G, syn159N]),
. . . . Georgia06_2010_02_05 (
. . . . . . . . syn11A,
. . . . . . . . 119V,
. . . . . . . . syn161Y [H3N8 2009, H6N1, H9N2],
. . . . . . . . 206T,
. . . . . . . . syn256Y [H6N1],
. . . . . . . . syn283Q [H5, H6, H9N2],
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . 377K [H9N2],
. . . . . . . . syn520Y),
. . . . Vermont30_2009_12_22 (
. . . . . . . . 127L, 165N, 206T, syn305K),
. . . . SouthCarolina02E3_2010_03_05 (
. . . . . . . . 25R [Utah42_2009_07_24 with 225G / 225N,
. . . . . . . . . . . Texas extensive (12),
. . . . . . . . . . . Afghanistan (2),
. . . . . . . . . . . Russia149_2009_11_01_xL],
. . . . . . . . syn50V [TexasJMS391_2009_12_23,
. . . . . . . . . . . . . TexasJMS413_2010_02_03,
. . . . . . . . . . . . . IndiaPune10604_2009_09],
. . . . . . . . 130E (GAa) [1918],
. . . . . . . . . . . . [Netherlands2243_2009_11_17_xL (GAg) mix
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . with 158E, 225G,
. . . . . . . . . . . . Iraq8531_2009_09_08_xL (GAa) with 131L,
. . . . . . . . . . . . Guangdong0872_2009_12_27 (GAa),
. . . . . . . . . . . . SingTLL52_2009_06_14 (GAa),
. . . . . . . . . . . . swAlbertaOTH_33_23_2009_05_03 (GAa)],
. . . . . . . . 206T),
. . . . Calif_SD216_2009_11_12 (
. . . . . . . . 206T,
. . . . . . . . 275A,
. . . . . . . . syn367D,
. . . . . . . . 377K [H9N2]),
. . . . FloridaAF2197_2010_03_07 (

. . . . . . . . syn12A,
. . . . . . . . 156T,
. . . . . . . . 206T,
. . . . . . . . syn256Y,
. . . . . . . . syn283Q,
. . . . . . . . syn338G,
. . . . . . . . 348I,
. . . . . . . . 377K,
. . . . . . . . HA truncated after aa386),
. . . . FL_Pensacola40_2009_11_09 (
. . . . . . . . syn#4Y [IndiaPune9355_2009_08,
. . . . . . . . . . . . GermanyBY74_2009 with 225G & 226R],
. . . . . . . . 89G [H7N7],
. . . . . . . . 206T,
. . . . . . . . syn476N,
. . . . . . . . syn492Y,
. . . . . . . . 523A,
. . . . . . . . syn544G),
. . . . IndiaBlore310_2009_07 (
. . . . . . . . syn105R, syn112S, 206T, syn477T),
. . . . IndiaDelhi3610_2009_08 (
. . . . . . . . syn125S, 157E, 206T, syn294P, syn464G),
. . . . IndiaDelhi3704_2009_09 (
. . . . . . . . syn44L, syn106E, syn125S, syn159N, 206T, syn297N, syn413K),
. . . . EasternIndia107_2009_08_TmX (
. . . . . . . . HA truncated before aa1,
. . . . . . . . syn173G,
. . . . . . . . 206T,
. . . . . . . . 270M,
. . . . . . . . syn285P,
. . . . . . . . HA truncated after aa330),
. . . . Mongolia_Inner01_2009_07_27 (
. . . . . . . . 89G [H7N7],
. . . . . . . . syn158G [H3N8],
. . . . . . . . . . . . . . . [Moscow_ION_2009_07_16,
. . . . . . . . . . . . . . .NY4748_2009_07 with 163E],
. . . . . . . . syn159N,
. . . . . . . . 206T,
. . . . . . . . 247T,
. . . . . . . . syn427E),
. . . . Aarhus241_2009_11_26_xL (
. . . . . . . . 176I, ** connecting Europe to North America xL **
. . . . . . . . syn177L,  
. . . . . . . . 206T,
. . . . . . . . 324I,
. . . . . . . . syn383N [India PF11],
. . . . . . . . syn413K [H9N2]),
. . . . SwedenMalmoe2_2010_05_07 (
. . . . . . . . 89G [H7N7],
. . . . . . . . syn108L [tn],
. . . . . . . . syn159N [H3N8, H9N2],
. . . . . . . . . . . . . . [Orenburg2974_2009_11_16_xL,
. . . . . . . . . . . . . . IndiaDelhi3704_2009_09,
. . . . . . . . . . . . . . NY, California, Texas, Wisconsin,
. . . . . . . . . . . . . . Scandinavia, Italy, et al],
. . . . . . . . 206T,
. . . . . . . . 259T,
. . . . . . . . syn280T [1918, WSN33],
. . . . . . . . syn526S [India3725_2010_04_03]),
. . . . Lisboa2_2010_01_04 (
. . . . . . . . 0I [Latvia12_649_2009_12_09, 
. . . . . . . . . NY7426_2009_12_08,
. . . . . . . . . Tambov_FOS_2009_12_01_xL,
. . . . . . . . . Slovenia5555_2009_12,
. . . . . . . . . Slovenia5559_2009_12,
. . . . . . . . . Ivanovo_RNA_2009_11_24_xL_f with 225G, 225N,
. . . . . . . . . Stockholm107_2009_11_24,
. . . . . . . . . GDyuncheng51_2009_11_19,
. . . . . . . . . Guangdong1271_2009_11_19,
. . . . . . . . . Austria528378_2009_11_19,
. . . . . . . . . Latvia11_1133_2009_11_16,
. . . . . . . . . Latvia11_1133M_2009_11_16,
. . . . . . . . . Latvia11_575_2009_11_11,
. . . . . . . . . England94600039_2009_10_27,
. . . . . . . . . SwedenUmea8_2009_10_07,
. . . . . . . . . Managua2323_02_2009_08_18,
. . . . . . . . . Utah20_C2_2_2009_07_25_VxX, with 159D, 227G,
. . . . . . . . . Texas42163291_2009_06_16,
. . . . . . . . . Marseille3416_2009],
. . . . . . . . syn181G [H9N2],
. . . . . . . . . . . . . . . [Latvia12_649_2009_12_09,
. . . . . . . . . . . . . . . Slovenia5555_2009_12,
. . . . . . . . . . . . . . . Slovenia5559_2009_12,
. . . . . . . . . . . . . . . Stockholm107_2009_11_24,
. . . . . . . . . . . . . . . Austria528378_2009_11_19,
. . . . . . . . . . . . . . . Latvia11_1133_2009_11_16,
. . . . . . . . . . . . . . . Latvia11_1133M_2009_11_16,
. . . . . . . . . . . . . . . Latvia11_575_2009_11_11,
. . . . . . . . . . . . . . . England94600039_2009_10_27,
. . . . . . . . . . . . . . . Marseille3416_2009],
. . . . . . . . 206T,
. . . . . . . . HA truncated after aa330),
. . . . Lisboa120_2009_12_21 (
. . . . . . . . 158E,
. . . . . . . . 206T,
. . . . . . . . HA truncated after aa330),
. . . . Rome709_2009_07_14 (
. . . . . . . . 35I,
. . . . . . . . syn41N,
. . . . . . . . syn93C,
. . . . . . . . syn96G,
. . . . . . . . 206S,
. . . . . . . . 388M,
. . . . . . . . syn456L,
. . . . . . . . 516X (Ann),
. . . . . . . . 517X (nTG)),
. . . . BZ_Bahia12606_2009_08_18_38F_f (
. . . . . . . . 89E [tn],
. . . . . . . . syn92T [tn],
. . . . . . . . 206T,
. . . . . . . . syn413K [H9N2],
. . . . . . . . syn419L [H5N1]),
. . . . Australia35_2009_07_24 (
. . . . . . . . 89G,
. . . . . . . . syn159N,
. . . . . . . . 206T,
. . . . . . . . syn432L,
. . . . . . . . 504E [H6N1, H9N2, H11],
. . . . . . . . . . . [Georgia23_2009_09_11_xL_TmX]),
. . . . Oz_Victoria800_2010_06_02 (
. . . . . . . . syn44L,
. . . . . . . . syn106E,
. . . . . . . . 128D [H5N1],
. . . . . . . . . . . [GermanyBY74_2009
. . . . . . . . . . . . . . . . . with 128D, 225E and 226R,
. . . . . . . . . . . Kenya0042_2009_10_22 with 225E,
. . . . . . . . . . . Netherlands1064b_2009_09_01 with 225G GGa,
. . . . . . . . . . . SingSS003_2010_04 with 225G,
. . . . . . . . . . . SingSS004_2010_04 with 225G],
. . . . . . . . 206T,
. . . . . . . . 377K [H9N2],
. . . . . . . . 502K [UkrTernopilN10_2009_10_28_xL_f with 225G,
. . . . . . . . . . . SingGP2362_2010_05_18,
. . . . . . . . . . . Scandinavia (7),
. . . . . . . . . . . CalifVRDL2_2010_01_11,
. . . . . . . . . . . California33_2009_08_06,
. . . . . . . . . . . Michigan21_2009_08_07,
. . . . . . . . . . . SouthCarolina36_2009_09_02,
. . . . . . . . . . . SouthCarolina38_2009_09_17,
. . . . . . . . . . . Haiti534_2009_10_19,
. . . . . . . . . . . AlgeriaG2902_2009_12_09 mix with 225E,
. . . . . . . . . . . Egypt114_2009_12_06 with 225E,
. . . . . . . . . . . JapanPR1070_2009_07_10,
. . . . . . . . . . . ThailandTHB0438_2009_07_28,
. . . . . . . . . . . Jiangyin34_2009_08_16,
. . . . . . . . . . . GuangxiLongan1870_2009_12_16],
. . . . . . . . syn529L),
. . . . Vietnam2043_2009_12_01_TmX (
. . . . . . . . 206T,
. . . . . . . . syn300P (CCa) [H2 Avian, H6N1]
. . . . . . . . Full sequence with no other HA changes),
. . . . NagaHA10_22_2010_03_01 (
. . . . . . . . 22I, syn44L, syn149K, syn163K, 206T,
. . . . . . . . syn372Q, syn413K, syn485G, 523A),
. . . . SpainCat394_2009_06_29 (206T, 454N),
. . . . Taiwan29_2010_03_10 (
. . . . . . . . #8I, 22I, syn23L, 131P, 206T),
. . . . Iraq8531_2009_09_08_xL (
. . . . . . . . 130E (GAa) [1918],
. . . . . . . . . . . . [Netherlands2243_2009_11_17_xL (GAg) mix
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . with 158E, 225G,
. . . . . . . . . . . . SouthCarolina02E3_2010_03_05 with 25R,
. . . . . . . . . . . . Guangdong0872_2009_12_27,
. . . . . . . . . . . . SingTLL52_2009_06_14,
. . . . . . . . . . . . swAlbertaOTH_33_23_2009_05_03],
. . . . . . . . 131L [UkrDnip1175_2009_11_10],
. . . . . . . . 298V [H3N8, H9N2],
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn419L (CTa) [BZ_Bahia12606_2009_08_18_syn413K,
. . . . . . . . . . . . . . . . . . . Utah42_88_2009_07_24,
. . . . . . . . . . . . . . . . . . . Utah42_90_2009_07_24,
. . . . . . . . . . . . . . . . . . . DjiboutiN11092_2009_09_syn413K,
. . . . . . . . . . . . . . . . . . . Kentucky19_2009_xL,
. . . . . . . . . . . . . . . . . . . Texas45072128_2009_09_07_xL,
. . . . . . . . . . . . . . . . . . . Texas45122886_2009_09_12_xL,
. . . . . . . . . . . . . . . . . . . NorthCarolina59M1IR_2009_11_07_xL,
. . . . . . . . . . . . . . . . . . . NY6941_2009_12_06_xL,
. . . . . . . . . . . . . . . . . . . NJ13_2009_12_07_xL,
. . . . . . . . . . . . . . . . . . . Indiana20_2009_12_08_xL,
. . . . . . . . . . . . . . . . . . . CalifVRDL121_2009_12_15_xL (CTt),
. . . . . . . . . . . . . . . . . . . swNC13598_2010_03_09_xL,
. . . . . . . . . . . . . . . . . . . swNC34752_2009_12_14_xL]),
. . . . UkrDnip1175_2009_11_10 (
. . . . . . . . 131L [Iraq8531_2009_09_08_xL with 130E],
. . . . . . . . syn168Y [H9N2],
. . . . . . . . 206T,
. . . . . . . . syn413K [H9N2],
. . . . . . . . with no NA)
. . . . UkrZakarpatska831_2009_11_13_f  (
. . . . . . . . syn48R [Norway1359_2009_05_16,
. . . . . . . . . . . . . IndiaPune10278_2009_09],
. . . . . . . . syn168Y [H9N2],
. . . . . . . . 206T,
. . . . . . . . syn327I [Vienna291_2009_11_19],
. . . . . . . . truncated HA after aa395,
. . . . . . . . with NA syn407V),
. . . . UkrSumy795_2009_11_13_f  (
. . . . . . . . 206T,
. . . . . . . . syn321L [UkrRivne596_2009_11_12_f],
. . . . . . . . syn397G,
. . . . . . . . truncated HA after aa397,
. . . . . . . . with NA syn407V),
. . . . Moscow_ION_2009_07_16 (
. . . . . . . . syn70C [H2N3, H3N8, H5, H6, H7N7],
. . . . . . . . . . . . . . [KenyaNairobi1_2010_01_21_bris],
. . . . . . . . syn158G [H3N8],
. . . . . . . . . . . . . . . [NY4748_2009_07 with 163E,
. . . . . . . . . . . . . . . Mongolia_Inner01_2009_07_27 with 89G,
. . . . . . . . . . . . . . . swNC13598_2010_03_09_f_xL
. . . . . . . . . . . . . . . . . . . . . . . . with 15 HA + 4 NA revisions],
. . . . . . . . 206T,
. . . . . . . . syn320G [H5N1],
. . . . . . . . . . . . . . [Kumamoto2_2010_01_14_TmX,
. . . . . . . . . . . . . . Yamagata307_2009_09_24,
. . . . . . . . . . . . . . Bolivia1263_2009_07_14,
. . . . . . . . . . . . . . Mie41_2009_07_11],
. . . . . . . . syn542S [H2, H5N1, H9N2]),
. . . . Russia149_2009_11_01_xL (
. . . . . . . . 25R [Utah42_2009_07_24 with 225G / 225N,
. . . . . . . . . . . Texas extensive (12),
. . . . . . . . . . . Afghanistan (2),
. . . . . . . . . . . SouthCarolina02E3_2010_03_05],
. . . . . . . . syn71E [H6N1],
. . . . . . . . syn109S [H2, H3N8, H9N2, H11]),
. . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . 324I,
. . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . syn413K [H9N2])
. . . . Tambov_FOS_2009_12_01_xL (
. . . . . . . . 0I [Lisboa2_2010_01_04,
. . . . . . . . . Latvia12_649_2009_12_09,
. . . . . . . . . NY7426_2009_12_08,
. . . . . . . . . Slovenia5555_2009_12,
. . . . . . . . . Slovenia5559_2009_12,
. . . . . . . . . Ivanovo_RNA_2009_11_24_xL_f with 225G, 225N,
. . . . . . . . . Stockholm107_2009_11_24,
. . . . . . . . . GDyuncheng51_2009_11_19,
. . . . . . . . . Guangdong1271_2009_11_19,
. . . . . . . . . Austria528378_2009_11_19,
. . . . . . . . . Latvia11_1133_2009_11_16,
. . . . . . . . . Latvia11_1133M_2009_11_16,
. . . . . . . . . Latvia11_575_2009_11_11,
. . . . . . . . . England94600039_2009_10_27,
. . . . . . . . . SwedenUmea8_2009_10_07,
. . . . . . . . . Managua2323_02_2009_08_18,
. . . . . . . . . Utah20_C2_2_2009_07_25_VxX with 159D, 227G,
. . . . . . . . . Texas42163291_2009_06_16,
. . . . . . . . . Marseille3416_2009],
. . . . . . . . 24K,
. . . . . . . . syn168Y [H9N2],
. . . . . . . . 206T,
. . . . . . . . 269V [H9N2, H11],
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn426A [H2, H4, H5, H6, H7N7, H9N2],
. . . . . . . . . . . . . [Hiroshima645_2009_12_12,
. . . . . . . . . . . . . Ivanovo_RNA_2009_11_24_xL_f],
. . . . . . . . syn542S [H2, H5N1, H9N2]),
206T (ACt)
. . . . Georgia670_2010 (Europe)
. . . . HiroshimaC309 (
. . . . . . . . syn116R, 158E [H3N8, H5N1], 225E, 300S, 301V mix, syn398E)
207S (TCA)
. . . . PF11 wt
. . . . H5N1 wt
. . . . S9, S7, M7, S5, WSN33, 1918, Sask
207S synonymous (TCc)
. . . . Chiba1001
. . . . tn
207S synonymous (TCg)
. . . . California01_2010,
. . . . CalifVRDL100 . . .  (119M [H7N7], 189T [H5, H6, H9N2], 377K [H9N2]),
. . . . CalifVRDL12_2010 (119M [H7N7], 189T [H5, H6, H9N2], 377K [H9N2],
. . . . . . . . . . . . . . . . . syn477T [H3N8]),
. . . . CalifVRDL14_2010 (119M [H7N7], 189T [H5, H6, H9N2], 377K [H9N2],
. . . . . . . . . . . . . . . . . syn477T [H3N8]),
. . . . Avian H2N3,
. . . . H7N7 mallCalHKWF1971_2007 plus 5
207P (cCA)
. . . . Thailand34_9936_2010_07_14 (
. . . . . . . . HA begins at aa104,
. . . . . . . . 128D,
. . . . . . . . 207P,
. . . . . . . . HA truncated after aa253)
208R synonymous (AGg)
. . . . Vienna291_2009_11_19 (
. . . . . . . . 34D [Orenburg2974_2009_11_16_xL],
. . . . . . . . 141N,
. . . . . . . . syn208R,
. . . . . . . . syn327I [UkrZakarpatska830_2009_11_12_f,
. . . . . . . . . . . . . UkrZakarpatska831_2009_11_13_f, et al],
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw]),
. . . . TexasJMS385_2009_12_04 (
. . . . . . . . syn122K,
. . . . . . . . syn194L,
. . . . . . . . syn208R,
. . . . . . . . 324I,
. . . . . . . . syn366A)
208K (AaA)
. . . . US, UK, Canada, HK, MX, Italy (2),
. . . . Ontario10016_TmX, Ontario10296_TmX,
. . . . Ontario25913_2009_09_07_TmX (
. . . . . . . . #12E,
. . . . . . . . 186P,
. . . . . . . . 208K,
. . . . . . . . 275A [Guangdong2282_2009_11_23
. . . . . . . . . . . . . . . . . . . . . with 230I (ATt),
. . . . . . . . . . . . . WiscD0337_2009_12_15
. . . . . . . . . . . . . . . . . . . . . with 230I (ATa)],
. . . . . . . . 296H,
. . . . . . . . 512K),
. . . . Ontario25389,
. . . . NY1999_2010_01_18,
. . . . . . . . syn169I,
. . . . . . . . 200S,
. . . . . . . . 208K,
. . . . . . . . syn212K,
. . . . . . . . 286E [H6],
. . . . . . . . syn429L (TTa) [H3N8 Avian]),
. . . . Nevada01_2010,
. . . . CalifVRDL21 (206S, 513V),
. . . . Philippines2810_VxX, Philippines2810_C1_VxX,
. . . . Rome685_2009_11_12 (syn181G, 238K [H6N1, H9N2]),
. . . . RheinlandPfalz81, Sachsen129,
. . . . Australia (14) including
. . . . Sydney2054_2009_TmX (
. . . . . . . . 73P, syn108L, 189D mix, 208K, 414I, syn450E),
. . . . Sydney2056_2009_TmX (
. . . . . . . . 73P, syn108L, 208K, 414I, syn450E),
. . . . NewZealand871, Asia (5),
. . . . BahrainN11890_2009_10, BahrainN11892_2009_10, Dakar 2010 (3),
. . . . Cyprus5870_2010 (214R, 225E, 324I),
. . . . Ptolemaida370_2009_06_23,
. . . . IndiaMum9312_2009_08 (208K, 225G, syn385V),
. . . . tkOntarioFAV110_2009 _10_23 (2E, 38V, 208K, 248N,
. . . . . . . . . . . . . . . . . . . . . . 296H, 512K),
. . . . tkOntarioFAV110_4_2009 _11_03 (2E, 158E [H3N8, H5N1],
. . . . . . . . . . . . . . . . . . . . . . 193R, 208K, 296H, 512K),
. . . . tkOntarioFAV114_17_2009 _11_03 (2E, 186P, 208K,
. . . . . . . . . . . . . . . . . . . . . . 296H, 512K)
. . . . tkDeutsche, swDeutsche,
. . . . S5, 1918, tn
208K (Aag)
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11])
208S (AGt)
. . . . Australia43, Australia45,
. . . . H6N1
208G (gGA)
. . . . NY6292,
. . . . HubeiWuchang1407,
. . . . Zhongyuan1643_2009_11_16 (131P, syn326S),
. . . . Avian H4N6, H9N2 (gaA)
208T Norway3440
209Y synonymous (TAt)
. . . . ShanxiWanbolin337
209D NorthDakota15
210S synonymous (AGt)
. . . . Bogota0466N, Malaysia9131,
. . . . IndiaJalna9436_2009_08_30  (
. . . . . . . . 8V [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . .  NY7216_2009_12_21 with 225G,
. . . . . . . . . .  Utah32_2009_10_14],
. . . . . . . . syn147F [H3N8 Avian, H4, H5, H6, H11],
. . . . . . . . . . . . . . [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . . . . . . IndiaPune21115_2009_12,
. . . . . . . . . . . . . . Athens943_2009_06_12,
. . . . . . . . . . . . . . CalifVRDL99_2009_11_05,
. . . . . . . . . . . . . . Texas44301765_2009_08_30],
. . . . . . . . syn210S,
. . . . . . . . 226R),
. . . . H1N1 Avian (tn),
. . . . H9N2 (Aat)
210G (gGC) Bilthoven4360903119 (225E)
210N Texas76C2,
. . . . Hiroshima647 (syn91G, 122E mix, syn145K, 200T, 219T mix) mix,
. . . . H1N1 (1943, 46, 51)
211K synonymous (AAa) 
. . . . MXinDRE50617 (225G), Niedersachsen330,
. . . . H3N8 including
. . . . . . . . eqIndiaAhmedabad1_2009_04_26,
. . . . . . . . eqIndiaKatraJammu7_2008_06
211R
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . 1918, H1N1 (1943, 46, 51)
212R
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . 1918, H1N1 (1943, 46, 51)
212E (gAG)
. . . . Indiana21_2009_12_01 (

. . . . . . . . syn12A,
. . . . . . . . syn177L,
. . . . . . . . syn193S,
. . . . . . . . 212E mix,
. . . . . . . . 313K,
. . . . . . . . syn346G,
. . . . . . . . 359G,
. . . . . . . . 377K,
. . . . . . . . 494K),
. . . . Netherlands2229_2009_11_19_xL (212E mix, 324I),
. . . . Vlad01 (225G), Argentina8574_41, IN21, HI30, Malaysia4039,
. . . . Latvia122498 (225G), Iwate1093
212N ME15, Rabat72
212T (AcG)
. . . . AnadyrIIV177_2009_12_04_xL_f (
. . . . . . . . . . . 212T [H3N8], 225G, syn238E [H2, H4],
. . . . . . . . . . . 324I, syn413K [H9N2],
. . . . . . . . . . . syn484N [H3N8, H4, H5, H6, H7N7, H9N2, H11]),
. . . . CA07X179, CA07X181,
. . . . H3N8 eqCheshire1_2006, eqLonquen1_2006
212K synonymous (AAa)
. . . . NY1999_2010_01_18,
. . . . . . . . syn169I,
. . . . . . . . 200S,
. . . . . . . . 208K,
. . . . . . . . syn212K,
. . . . . . . . 286E [H6],
. . . . . . . . syn429L (TTa) [H3N8 Avian]),
. . . . NY0461,
. . . . TexasJMS404_2009,
. . . . AfghanN11216_2009_10_16,
. . . . swNC13598_2010_03_09_f_xL with 14 HA + 4 NA revisions (
. . . . . . . . . . 57E, syn74S, 135I, syn158G [H3N8], 193K, 
. . . . . . . . . . 264V, 298V [H9N2], syn314K, 364F, syn413K [H9N2],
. . . . . . . . . . 414I [H5], syn419L, syn475D [H5, 1918, WSN33])
213L (cTC)
. . . . Moldova226_2010_01_11 (
. . . . . . . . #11T,
. . . . . . . . 188N,
. . . . . . . . 213L,
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . HA truncated after aa396),
. . . . TX15,
. . . . Iowa04_2010,
. . . . H5N1
213S (TcC)
. . . . UKEngland5040499_2010_12_f (
. . . . . . . . 100N,
. . . . . . . . 188T,
. . . . . . . . 213S,
. . . . . . . . syn338G,
. . . . . . . . 377K,
. . . . . . . . 454N,
. . . . . . . . syn537S)
213V (gTC)
. . . . England94360008_2009_10 (
. . . . . . . . 0I, syn181G, 213V, 222R, 373H, 495V, 504N),
. . . . ENG423_2009 (140L, 187A, syn456L [H5N1])
213F synonymous (TTt)
. . . . NY3230_2010_01_25 (
. . . . . . . . syn34N,
. . . . . . . . 100N,
. . . . . . . . 159K,
. . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . . . . . . . . [Kansas25_2009_12_07 with 50A,
. . . . . . . . . . . . . . . Indiana21_2009_12_01
. . . . . . . . . . . . . . . . . . . . . with 212E, 313K, syn346G,
. . . . . . . . . . . . . . . SwedenGothenburg2_2009_12_01_xL with 146G,
. . . . . . . . . . . . . . . Tambov_LLA_2009_11_30_xL_f with 225G,
. . . . . . . . . . . . . . . Perm01_2009_11_25_xL_f,
. . . . . . . . . . . . . . . MoscowOb_ZNF_2009_11_24_xL_f,
. . . . . . . . . . . . . . . Ivanovo_KOE_2009_11_25_xL_f,
. . . . . . . . . . . . . . . Astrakhan_CHRM_2009_11_24_xL_f,
. . . . . . . . . . . . . . . GreeceThessaloniki2812_2009_11_22,
. . . . . . . . . . . . . . . Ivanovo_STV1_2009_11_21 with 225G,
. . . . . . . . . . . . . . . NizhnyNovgorodRII1_67M_2009_11_14_f,
. . . . . . . . . . . . . . . RussiaVoronezhRII1_41M_2009_11_10_f,
. . . . . . . . . . . . . . . NorwayOslo110_2009_11_10,
. . . . . . . . . . . . . . . MoscowOb_STV_2009_11_09_f with 225N,
. . . . . . . . . . . . . . . GermanyNiedersachsen352_2009_11_05,
. . . . . . . . . . . . . . . SwedenOrebro1_2009_11_02_xL_f,
. . . . . . . . . . . . . . . RussiaStPeterRII48_2009_11_02,
. . . . . . . . . . . . . . . MoscowOb_OAM_2009_11_02_xL_f with 225G,
. . . . . . . . . . . . . . . MoscowOb_DEI_2009_11_xL_f with 225G,
. . . . . . . . . . . . . . . Ivanovo_AMV_2009_11_xL_f with 225G,
. . . . . . . . . . . . . . . BelgiumBrussels106_2009_10_29,
. . . . . . . . . . . . . . . RussiaStPeterRII82_2009_10_28,
. . . . . . . . . . . . . . . Moscow_BVA_2009_10_24_xL_f with 225G,
. . . . . . . . . . . . . . . SwedenUmea8_2009_10_07 with 0I, 244I,
. . . . . . . . . . . . . . . Norway3364_2_2009_09_08_xL,
. . . . . . . . . . . . . . . DenmarkAarhus82_2009_xL,
. . . . . . . . . . . . . . . Orenburg_VNV_2009_08_06_xL,
. . . . . . . . . . . . . . . England2800004_2009_07,
. . . . . . . . . . . . . . . WiscD0008_2009_06_04],
. . . . . . . . syn213F [H5N1, H7N3, H7N7, H9N2],
. . . . . . . . . . . . . . . [Texas03_2010_06_01,
. . . . . . . . . . . . . . . Arizona06_2010_05_29,
. . . . . . . . . . . . . . . Calif09_2010_05_11,
. . . . . . . . . . . . . . . Wisconsin06_2010_04_28,
. . . . . . . . . . . . . . . UkrDnipropetrovsk445_2010_04_19,
. . . . . . . . . . . . . . . Hawaii06_2010_04_19,
. . . . . . . . . . . . . . . Minnesota04_2010_03_22 with 230I,
. . . . . . . . . . . . . . . Wisconsin03_2010_03_12,
. . . . . . . . . . . . . . . Arizona03_2010_03_06]
. . . . . . . . syn231N,
. . . . . . . . syn270I,
. . . . . . . . 377K [H9N2]),
. . . . StPete99 (225E),
. . . . Sachsen156, IsraelMF4683,
. . . . Georgia4805 (35I [H5N1]), Georgia670_2010 (165R)
214K synonymous (AAa)
. . . . CalifVRDL81 (100N, 135I), San Diego_101_2009,
. . . . NY1999_2010 (syn429L (TTa) [H3N8]),
. . . . NM13,
. . . . England919_2009_11,
. . . . Iran20001,
. . . . Iran16677_2009_11_24 (syn254P, 377K [H9N2]),
. . . . Iraq2587, CatS1937, ENG620,
. . . . China22811_2009_12 (syn10Y, 12S, syn62G, 70R, 131P, 166E,
. . . . . . . . . . . . . . . . 237I, 241E, 271P, syn285P, syn377E,
. . . . . . . . . . . . . . . . syn439D, 443P, 461R),
. . . . GuangdongFutian1480,
. . . . NagasakiHA1015_2010_02_01 (135E, 377K),
. . . . NagasakiHA1017_2010_02_08 (135E, 377K, syn496A, 550K),
. . . . swIN17311_2010_03_17 (syn65L [H3N8], 137T, 138S, syn474C)
. . . . S5,
. . . . H5N1 Aga, Ata 2009 Avian & Human, gta
. . . . H9N2
214E (gAG)
. . . . Kurgan01, Moldova (3),
. . . . Thessaloniki213_2010_01_12 (50I),
. . . . Serres211_2010_01_12 (50I),
. . . . IndiaGWMH04_2009 (
. . . . . . . . HA truncated until aa163,
. . . . . . . . 179V, 214E,
. . . . . . . . HA truncated after aa224),
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11])
214N (AAt)
. . . . ENG92960012,
. . . . SHIZUOKA1514,
. . . . Hessen48_2009_07_28_xL
214Q (cAG)
. . . . Wisc0936 (237L [H5N1, H6N1, H9N2])
. . . . Origin Unknown
214R (AgG)
. . . . England1048_2009_12 (

. . . . . . . . 214R, 225E, 324I)
. . . . England94840759_2009_11 (
. . . . . . . . syn50V [SouthCarolina02E3_2010_03_05,
. . . . . . . . . . . . . . TexasJMS413_2010_02_03,
. . . . . . . . . . . . . . TexasJMS391_2009_12_23,
. . . . . . . . . . . . . . IndiaPune10604_2009_09]
. . . . . . . . 214R,
. . . . . . . . syn428L),
. . . . Cyprus5870_2010 (208K, 225E, 324I),
. . . . Rome675_2009_10_28
215P synonymous (CCa)
. . . . NY2372_2010_01_20 (22L, 233H, 273A,
. . . . . . . . . . . . . . . . . . . . syn283Q [H9N2], 382I),
. . . . SanDiego_101_2009,
. . . . SC33,
. . . . Kuwait (4), Kenya0013_2009_10_09 (225E),
. . . . Eng616,
. . . . BZ_Bahia15525_2009_09_05_42M_f (
. . . . . . . . syn33V, 100N [H9N2], syn215P, 225G (rrT),
. . . . . . . . syn478C mix [H5N1], syn499N mix, 511I mix [H5N1]),
. . . . NepalNP09A284, Thai0440, GuangdongyunchengSWL51,
. . . . swHK_2299_2009_10_22, swHK_NS1583_2009_10_22
. . . . swIL173151_2010_03_18 (syn199D, 202I, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2]),
. . . . swIL173153_2010_03_18 (syn199D, 202I, syn308K, syn322R,
. . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2]),
. . . . swMO15534_2010_03_24 (syn199D, 202I, syn308K, syn322R,
 . . . . . . . . . . . . . . . . . . . . . syn366A [tn], 377K [H9N2])
215P synonymous (CCt)
. . . . NY_WC37RG, MO02,
. . . . Eng256,
. . . . ENGxfl00311_2009_05 (syn238E, syn377E, syn456L [H5N1], syn523V),
. . . . Lisboa171 (324I, 373H)
215T (aCG)
. . . . Sydney202_9M_2010_07_18 (
. . . . . . . . 34D,
. . . . . . . . syn44L,
. . . . . . . . 97N,
. . . . . . . . syn106E,
. . . . . . . . 128D,
. . . . . . . . 215T [PolandWarsawINS316_2009_12_08]
. . . . . . . . 225G,
. . . . . . . . 253A,
. . . . . . . . syn362S,
. . . . . . . . 377K,
. . . . . . . . 439G [Guangdong5024_2009_10_20]),
. . . . PolandWarsawINS316_2009_12_08 (
. . . . . . . . 22I,
. . . . . . . . syn92T,
. . . . . . . . 119M,
. . . . . . . . 165N,
. . . . . . . . syn178V,
. . . . . . . . syn186S,
. . . . . . . . 215T,
. . . . . . . . syn256Y,
. . . . . . . . syn275V,
. . . . . . . . 463V)
216E synonymous (GAg)
. . . . RussiaStPeterRII35_2009_11_03 (
. . . . . . . . syn216E,
. . . . . . . . 225G,
. . . . . . . . syn317L,
. . . . . . . . 324I,
. . . . . . . . syn413K)
. . . . . . . . NA truncated prior to xL verification,
. . . . BadenWurttemberg490_xL, Hamburg14_xL,
. . . . Thuringen189_xL, Thuringen227_xL, Bilthoven4360903109, 
. . . . Moldova (4), Belarus, Bosnia (3, 225G),
. . . . Bulgaria1369 (99T), Ostrava221_2010,
. . . . Iraq2587, Indiana,
. . . . swAlbertaOTH33_24_2009_05_03 (196H, 223M, syn456L [H5N1]),
. . . . tn, H9N2 (GTg)
217I (ATA)
. . . . PF11 wt
. . . . H5N1 wt
. . . . S9, S7, M7, S5, WSN33, 1918, tn, Sask
217I synonymous (ATc)
. . . . BrasilAlagoas201_2010_03_26,
. . . . BrasilAlagoas143_2010_03_13
217M (ATg)
. . . . CalifVRDL99_2009_11_05
. . . . . . . . with 4 potential zoonotic polymorphisms (
. . . . . . . . syn97D [H3N8 Avian, Equine & Canine, H5N1 Avian & Human],
. . . . . . . . syn147F [H3N8 Avian, H4, H5, H6, H11],
. . . . . . . . . . . . . . [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . . . . . .  IndiaJalna9436_2009_08_30 with 226R,
. . . . . . . . . . . . . .  IndiaPune21115_2009_12,
. . . . . . . . . . . . . .  Texas44301765_2009_08_30,
. . . . . . . . . . . . . .  IndiaPune21115_2009_12,
. . . . . . . . . . . . . .  Athens943_2009_06_12],
. . . . . . . . 217M [H5N1],
. . . . . . . . . . . . [Unique to PF11],
. . . . . . . . 377K [H9N2],
. . . . . . . . syn429L (TTa) [H3N8 Avian]),
. . . . H5N1 Human Indonesia 2006,
. . . . H5N1 Avian Bangladesh 2008
217T (AcA)
. . . . ArgentinaHNRG42_2009_06_27 (syn355H, et al)
218A synonymous (GCc)
. . . . Habana2687 (191P, 221T)
218A synonymous (GCg)
. . . . Belarus, GhanaN12987_2009_10,
. . . . H9N2 (GGg), H6N1
218A synonymous (GCt) Nebraska02_2010, Iraq2587,
. . . . WSN33
218E Texas77 (159S, syn173G, 218E, 275A, 377K, 454I)
218S (tCA) Georgia07_2010 mix
218T (aCA)
. . . . Hiroshima201 (225G),
. . . . KuwaitN12991_2009_08_24,
. . . . ENGxfl00275_2009,
. . . . BelgiumG4751_2009 mix, Latvia237_2010 mix (377K)
218V (GtA)
. . . . Minnesota04_18M_2010_03_22 (
. . . . . . . . 34D,
. . . . . . . . 165N,
. . . . . . . . 189T,
. . . . . . . . syn213F,
. . . . . . . . 218V,
. . . . . . . . 230I (ATa),
. . . . . . . . syn305K,
. . . . . . . . 313I [Orenburg2974_2009_11_16_xL
. . . . . . . . . . . . . . . . with 225N],
. . . . . . . . syn346G),
. . . . GuangdongyunchengSWL51, Malaysia (2 mix wt),
. . . . Pennsylvania14_20M_2009_06_07 (
. . . . . . . . 158E [H3N8, H5N1] mix,
. . . . . . . . 218V mix,
. . . . . . . . 523I mix),
. . . . Avian H1N1 tkGermanyNIR778_2009
218V (GTc) swIll02930, 2931, 2932, 2937 (2009-12-29, 30)
219I synonymous (ATt)
. . . . FL_Pen213_2009_11_17 (
. . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . syn152I,
. . . . . . . . . . . . syn219I,
. . . . . . . . . . . . 273A,
. . . . . . . . . . . . syn276H [1918, S5],
. . . . . . . . . . . . syn456L [H5N1],
. . . . . . . . . . . . 463V,
. . . . . . . . . . . . 523A),
. . . . CalifVRDL107_2009_11_15 (
. . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . 39N,
. . . . . . . . . . . . syn152I,
. . . . . . . . . . . . syn219I,
. . . . . . . . . . . . syn276H [1918, S5],
. . . . . . . . . . . . syn456L [H5N1],
. . . . . . . . . . . . 463V,
. . . . . . . . . . . . 523A),
. . . . CalifVRDL115_2009_12_04 (
. . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . 77N,
. . . . . . . . . . . . syn152I,
. . . . . . . . . . . . syn219I,
. . . . . . . . . . . . syn276H [1918, S5],
. . . . . . . . . . . . syn456L [H5N1],
. . . . . . . . . . . . 463V,
. . . . . . . . . . . . 523A),
. . . . Calif_SD_35, CalifVRDL84 (35I [H5N1]),
. . . . NY6939 (35I [H5N1]),
. . . . Ancona451_2009_11_27_f (
. . . . . . . . syn152I, syn219I, syn254P [1918, tn, H5N1]),
. . . . Lyon2490, Poitiers3691 (35I [H5N1]), Valladolid35 (35I [H5N1]),
. . . . RheinlandPfalz81, Berlin210, BadenWurttemberg511,
. . . . Saarland21 (35I [H5N1]),
. . . . Luxembourg184_2010 (35I [H5N1]),
. . . . Luxembourg251_2010 (35I [H5N1]),
. . . . Dakar 2010 (4, 35I [H5N1]), Cameroon463 (35I [H5N1]),
. . . . tkOntarioFAV117_1C_2009_12_07 (
. . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . syn55L,
. . . . . . . . . . . . syn152I,
. . . . . . . . . . . . 186P,
. . . . . . . . . . . . syn205G [H6, H7N7],
. . . . . . . . . . . . syn219I,
. . . . . . . . . . . . syn276H [1918, S5],
. . . . . . . . . . . . syn456L [H5N1],
. . . . . . . . . . . . 463V,
. . . . . . . . . . . . syn486T,
. . . . . . . . . . . . 523A),
. . . . H5N1 (Act), H6N1 (gct, gat)
219L (tTA)
. . . . EasternIndia109_2009_08 (
. . . . . . . . HA truncated before aa#2,
. . . . . . . . 219L,
. . . . . . . . 225E,
. . . . . . . . HA truncated after aa330)
219T (AcA)
. . . . Wisc0134 (225E),
. . . . Ontario315107 (225E),
. . . . RomaISS223,
. . . . TessenderloINS191_2009_12_15 (
. . . . . . . . syn41N, 165R, syn181G, 219T, 288S, 373H),
. . . . Hiroshima647 (
. . . . . . . . syn91G, 122E mix, syn145K, 200T, 210N mix, 219T mix),
. . . . Korea3623_2009_11_09 (
. . . . . . . . 131P, 226R, 280A),
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11])
219V (gTA)
. . . . OzVictoria522_29F_2010_08_11 (
. . . . . . . . 18I,
. . . . . . . . syn44L,
. . . . . . . . 97N,
. . . . . . . . syn106E,
. . . . . . . . 128D,
. . . . . . . . 219V,
. . . . . . . . 253A,
. . . . . . . . syn359E [H5, Russia, FL],
. . . . . . . . syn362S,
. . . . . . . . 377K,
. . . . . . . . 477S),
. . . . Texas77_E3_2009_10_06 (
. . . . . . . . . . . . 159S, syn173G, 219V, 226R, syn246E, 275A, 377K [H9N2])
220R (AGA)
. . . . PF11 wt
. . . . H5N1 wt
220R synonymous (AGg)
. . . . Florida02_2010,
. . . . Mexico476,
. . . . MexicoCityCIA4_2009_08_25 (syn355H, 528I, et al),
. . . . ShanghaiP1_2009_09_21 (131P, syn286K),
. . . . Malaysia9451,
. . . . 1918,
. . . . H6N1
221P synonymous (CCa)
. . . . GreeceLivadia1851_2010_01_26 (
. . . . . . . . 132D,
. . . . . . . . syn177L,
. . . . . . . . 196L,
. . . . . . . . syn221P,
. . . . . . . . 222Q,
. . . . . . . . 276Q,
. . . . . . . . 373H,
. . . . . . . . syn420D)
. . . . WiscD0780
221P synonymous (CCt)
. . . . Non-PF11 tkDeutsche, swDeutsche
221T (aCC)
. . . . CubaHabana2687_2009 (191P, syn218A, 221T),
. . . . WiscS0339_2009_06_18 (206S)
222K synonymous (AAg)
. . . . England94760192_2009_11,
. . . . BeijingSE2849_2009_11 (131P, syn261E, 341G, syn456L [H5N1]),
. . . . S7, M7, S5,
. . . . H5N1
222Q (cAA)
. . . . GreeceLivadia1851_2010_01_26 (
. . . . . . . . 132D,
. . . . . . . . syn177L,
. . . . . . . . 196L,
. . . . . . . . syn221P,
. . . . . . . . 222Q,
. . . . . . . . 276Q,
. . . . . . . . 373H,
. . . . . . . . syn420D)
222R (AgA)
. . . . England94360008_2009_10 (
. . . . . . . . 0I,
. . . . . . . . syn181G,
. . . . . . . . 213V,
. . . . . . . . 222R,
. . . . . . . . 373H,
. . . . . . . . 495V,
. . . . . . . . 504N),
. . . . Finland2_2010_01_12 (
. . . . . . . . syn177L,
. . . . . . . . 222R,
. . . . . . . . 233H,
. . . . . . . . syn296Q,
. . . . . . . . 324I,
. . . . . . . . syn413K),
. . . . ThaiTHB0405, ThaiTHB0408
223V synonymous (GTa)
. . . . Cameroon10v_1090_2010_04_08 (
. . . . . . . . 35I,
. . . . . . . . 114L,
. . . . . . . . syn152I,
. . . . . . . . 158E,
. . . . . . . . syn219I,
. . . . . . . . syn223V,
. . . . . . . . syn254P,
. . . . . . . . syn276H,
. . . . . . . . syn402H,
. . . . . . . . syn419L,
. . . . . . . . syn456L,
. . . . . . . . 463V,
. . . . . . . . 523A),
. . . . Thailand34_9913_2010_07_14 (
. . . . . . . . HA begins at aa172,
. . . . . . . . syn223V [H5N1, H6N1],
. . . . . . . . HA truncated after aa253),
. . . . Texas45131774_2009_09_13 (
. . . . . . . . syn223V [H5N1, H6N1],
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . IndiaBlore236_2009_06 with 226R,
. . . . . . . . . . . . . . SouthCarolina18_2009_09_16_VxX,
. . . . . . . . . . . . . . FL_Pen210_2009_11_10 with 225E]),
. . . . Utah59_53F_2009_11_16,
. . . . ThaiTHB0390,
. . . . S9, WSN33, 1918, Sask (2/3),
. . . . H1N1 (1943, 1946, 1951),
. . . . H3N8 dkSaitama2_2009_10,
. . . . . . . . dkVietnamOIE2403_2009,
. . . . . . . . ApBelgium9477P2_2009_09_23,
. . . . . . . . npinAlaska44421385_2008,
. . . . . . . . extensive Avian 2006-2009,
. . . . H5N1 ext,
. . . . H6N1 mallSweden30/2005
223E (GaG)
. . . . OzBrisbane2014_2009_08_27 (
. . . . . . . . 3T [GhanaFS1966_2010_04-06,
. . . . . . . . . . . Taiwan27_2010_03_01
. . . . . . . . . . . . . . . .with 189T, 218T, syn305K, 404D, syn494E,
. . . . . . . . . . . NY04_2010_02_25
. . . . . . . . . . . . . . . .with 100N, syn232Y, syn270I, 437N, syn484N,
. . . . . . . . . . . England1054_2009_12 with 513V,
. . . . . . . . . . . RussiaStPeter99_2009_11_30,
. . . . . . . . . . . SichuanWuhouSWL4401_2009_11_29,
. . . . . . . . . . . MarylandAF2457_2009_11_12,
. . . . . . . . . . . Mississippi03_2009_09_25 with syn492Y,
. . . . . . . . . . . HongKong24705_2009_09_13,
. . . . . . . . . . . Netherlands1039_2009_08_25 with 430I,
. . . . . . . . . . . California36_2009_08_22,
. . . . . . . . . . . Suriname7534_2009_08_13,
. . . . . . . . . . . HenanSWL14_2009_07_17 with syn399Y,
. . . . . . . . . . . Surinam08_2009_06_11,
. . . . . . . . . . . Surinam02_2009_06_09,
. . . . . . . . . . . CanadaQCRV1759_2009_05_07,
. . . . . . . . . . . Ireland1_2009_05],
. . . . . . . . 223E mix wt [Unique to GISAID; Unique to GenBank],
. . . . . . . . 269V,
. . . . . . . . 414I)
223M (aTG)
. . . . California33_2009_08_06 (
. . . . . . . . 223M,
. . . . . . . . 262K,
. . . . . . . . 285T,
. . . . . . . . 502K [UkrTernopilN10_2009_10_28_xL_f with 225G,
. . . . . . . . . . . Oz_Victoria800_2010_06_02,
. . . . . . . . . . . SingGP2362_2010_05_18,
. . . . . . . . . . . Scandinavia (7) one with syn0T,
. . . . . . . . . . . CalifVRDL2_2010_01_11,
. . . . . . . . . . . Michigan21_2009_08_07 with syn368L,
. . . . . . . . . . . SouthCarolina36_2009_09_02 with syn368L,
. . . . . . . . . . . SouthCarolina38_2009_09_17 with #4C, syn368L,
. . . . . . . . . . . Haiti534_2009_10_19 with 1T,
. . . . . . . . . . . AlgeriaG2902_2009_12_09 mix with 225E,
. . . . . . . . . . . Egypt114_2009_12_06 with syn#1T, 225E,
. . . . . . . . . . . JapanPR1070_2009_07_10,
. . . . . . . . . . . ThailandTHB0438_2009_07_28,
. . . . . . . . . . . Jiangyin34_2009_08_16,
. . . . . . . . . . . GuangxiLongan1870_2009_12_16]),
. . . . swAlbertaOTH33_21_2009_05_05 (
. . . . . . . . 68R,
. . . . . . . . 223M,
. . . . . . . . 299V),
. . . . swAlbertaOTH33_24_2009_05_03 (
. . . . . . . . 196H,
. . . . . . . . syn216E [H9N2],
. . . . . . . . 223M,
. . . . . . . . syn456L [H5N1]),
. . . . H3N8 aTC eqEgypt6066NAMRU3VSVRI_2008, eqYokohamaaq19_2009,
. . . . H5N1 aTA Gharbiyah Death Cluster, EgyptN03434_33F_2009_04_15,
. . . . . . . . . . . . Early Viet, VietCL100_2004, VietJPHN30321_2005,
. . . . H7N7 aTA Equine Worldwide 1956-1977,
. . . . H11 aTA Ohio Avian 2001, Ohio Avian 1987
224R synonymous (AGa)
. . . . SachsenAnhalt134
. . . . tkDeutsche, swDeutsche
224K (AaG)
. . . . SouthCarolina18_2009_09_16_VxX (
. . . . . . . . 159D,
. . . . . . . . syn193S [H3N8, H6N1],
. . . . . . . . 206T,
. . . . . . . . 224K [Yaroslavl_CHMV_2009_11_10_f,
. . . . . . . . . . . . Orel_AAP_2009_f],
. . . . . . . . 324I,
. . . . . . . . syn379T [H5N1],
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . IndiaBlore236_2009_06_xL with 226R,
. . . . . . . . . . Texas45131774_2009_09_13 with syn223V,
. . . . . . . . . . FL_Pen210_2009_11_10 with 225E]),
. . . . Orel_AAP_2009_f  mix (
. . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . 224K [SouthCarolina18_2009_09_16_VxX],
. . . . . . . 225G (rrT) mix,
. . . . . . . syn310V [H3N8, H5N1 (E/A/H), H6, H7N7, H11],
. . . . . . . 324I,
. . . . . . . syn413K [H9N2],
. . . . . . . syn542S [H2, H5, H9N2]),
. . . . Yaroslavl_CHMV_2009_11_10_f  (
. . . . . . . 224K [SouthCarolina18_2009_09_16_VxX],
. . . . . . . 225G mix,
. . . . . . . 286N [H3N8],
. . . . . . . 296H,
. . . . . . . syn348V [IndiaPune10604_2009_09,
. . . . . . . . . . . . . . IndiaPune6196_2009_08,
. . . . . . . . . . . . . . IndiaPune807_2009_07,
. . . . . . . . . . . . . . IndiaDhule9433_2009_08,
. . . . . . . . . . . . . . BZ_SaoPaulo53823_2009_08_01_f,
. . . . . . . . . . . . . . Eng662_2009_08,
. . . . . . . . . . . . . . Yakutsk_EAV_2009_11_18],
. . . . . . . syn448L,
. . . . . . . syn490P,
. . . . . . . syn511T,
. . . . . . . syn542S [H2, H5, H9N2]),
. . . . Melbourne1_1946
. . . . WSN33 Aaa
224M (AtG) NY5186
225D synonymous (GAc)
. . . . HubeiWuchang1418,
. . . . Kenya0018_2009_10_13 (50I, 262K, syn335A),
. . . . swHK_NS1809_2009_12_03, swHK_NS1810_2009_12_03
225A (GcT)
. . . . Moldova5053_2009_12_11 triple mix with 225D and 225G (
. . . . . . . . 173R,
. . . . . . . . 176I,
. . . . . . . . 225A, 225D, 225G,
. . . . . . . . syn286K,
. . . . . . . . 377G,
. . . . . . . . HA truncated after aa396),
. . . . Madrid296_2009_11_17 (
. . . . . . . . 225A [Unique to PF11 as a single value],
. . . . . . . . 373H [Perth500_2010_02_17 with 165N,
. . . . . . . . . . . . . Tessenderlo191_2009_12_15
. . . . . . . . . . . . . . . . . . . . . with 165R, syn181G,
. . . . . . . . . . . . . Lisboa171_2009_12_02])
. . . . CalifVRDL31_2009_06_17 mix (
. . . . . . . . 225A, 225D,
. . . . . . . . 513V)
225N (aAT)
. . . . NZChristchurch16_2010_07_12 (
. . . . . . . . #4H,
. . . . . . . . syn44L,
. . . . . . . . 97N,
. . . . . . . . syn106E,
. . . . . . . . 128D,
. . . . . . . . 163T [ThaiSN_0116_2010_10],
. . . . . . . . 225N,
. . . . . . . . 253A,
. . . . . . . . syn362S,
. . . . . . . . 377K),
. . . . Texas43132503_2009_07_13 (
. . . . . . . . #12E, syn136T, 206S, 225N, 296H, syn363G),
. . . . ArgentinaHNRG8_2009_06_11 (206T, 225N),
. . . . BZ_SaoPaulo53838, Ukraine mix,
. . . . Netherlands2457b_2009_11_07_xL (
. . . . . . . . 1T,
. . . . . . . . syn413K [H2, H5N1, H9N2]),
. . . . Netherlands2629_2009_12_04_xL (
. . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . 225N,
. . . . . . . . syn233Y,
. . . . . . . . syn238E [H2, H4],
. . . . . . . . 324I,
. . . . . . . . 377K [H9N2],
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . 507E),
. . . . Victoria2125, Malaysia8860,
. . . . NaganoRC1_33M_2009_08_27_f (
. . . . . . . . syn28T,
. . . . . . . . 86T,
. . . . . . . . 158E [H3N8, H5N1], 
. . . . . . . . 225N,
. . . . . . . . syn325P (CCt) [H5N1],
. . . . . . . . . . . . . . . . . . [IndiaYtml9438_2009_08_28,
. . . . . . . . . . . . . . . . . . . England extensive,
. . . . . . . . . . . . . . . . . . . Slovenia extensive,
. . . . . . . . . . . . . . . . . . . Netherlands, Spain, Italy,
. . . . . . . . . . . . . . . . . . . Asia extensive,
. . . . . . . . . . . . . . . . . . . Middle East extensive,
. . . . . . . . . . . . . . . . . . . Perth1_2010_02_03,
. . . . . . . . . . . . . . . . . . . SouthDakota11_2009_09_30 (CCa),
. . . . . . . . . . . . . . . . . . . StPete99_2009_11_30 (CCa),
. . . . . . . . . . . . . . . . . . . Tallinn182_2010_01_04 (CCa),
. . . . . . . . . . . . . . . . . . . Tallinn183_2010_01_07 (CCa),
. . . . . . . . . . . . . . . . . . . TexasJMS408_2010_01_12 (CCa)]),
. . . . Neimenggu-Hangjinhouqi51, EgyptN14648_2009_11,
. . . . IrelandM79555, IrelandM79556,
. . . . BadenWurttemberg502,
. . . . Orenburg2974_2009_11_16_xL (
. . . . . . . . 34D [NewYork, Arizona, California],
. . . . . . . . syn159N [H3N8, H9N2]
. . . . . . . . . . . . . . [IndiaDelhi3704_2009_09,
. . . . . . . . . . . . . . NY, California, Texas, Wisconsin,
. . . . . . . . . . . . . . Scandinavia, Italy, et al],
. . . . . . . . 225N,
. . . . . . . . 313I [Minnesota04_2010_03_22
. . . . . . . . . . . . . . with 230I (ATa)],
. . . . . . . . syn372Q [H2, H3N8, H4, H5, H6, H7N3, H7N7, H9N2, H11]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . IndiaBlore236_2009_06 with 226R,
. . . . . . . . . . . . . . Ulyanovsk_SHTA_2009_10_31_f_225N,
. . . . . . . . . . . . . . Russia fatal extensive,
. . . . . . . . . . . . . . swIowa35572_2009_12_16,
. . . . . . . . . . . . . . NagasakiHA10_22_2010_03_01],
. . . . . . . . syn413K [H9N2],
. . . . . . . . syn485G [Nebraska 01_2010_01_28,
. . . . . . . . . . . . . .  IndiaPune10604_2009_09,
. . . . . . . . . . . . . .  NagasakiHA10_22_2010_03_01],
. . . . . . . . syn513I [Kansas26_2009_11_03,
. . . . . . . . . . . . . . Texas46201823_2009_10_20]),
. . . . YaroslavlIIV198_2009_12_05_xL_f (
. . . . . . . . . . . . . . . 166R [H2N3, H5N1, H11],
. . . . . . . . . . . . . . . 225N,
. . . . . . . . . . . . . . . syn372Q [H2, H3N8, H4, H5, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn413K [H9N2]),
. . . . MoscowOb_STV_2009_11_09_f (
. . . . . . . . . . . . . . . syn71E [H6N1],
. . . . . . . . . . . . . . . syn109S [H2, H3N8, H9N2, H11]),
. . . . . . . . . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . . . . . . . . 225N,
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . syn542S [H2, H5, H9N2]),
. . . . Tambov_SPN_2009_11_24_f (
. . . . . . . . . . . . . . . syn6L [H3N8],
. . . . . . . . . . . . . . . 19I [H3N8],
. . . . . . . . . . . . . . . syn53L [H2, H5N1 Viet Human, Avian, Civet, H6N1],
. . . . . . . . . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . . . . . . . . 225N,
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . syn542S [H2, H5, H9N2]),
. . . . Ulyanovsk_SHTA_2009_10_31_f _225N (
. . . . . . . . . . . . . . . 225N,
. . . . . . . . . . . . . . . syn372Q [H2, H3N8, H4, H5, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . syn542S [H2, H5, H9N2])
225E (GAa)
. . . . Extensive on multiple backgrounds, incl Kuwait, Ghana and Egypt,
. . . . Kenya - 12 in October 2009 including 7 with polymorphisms:
. . . . Kenya0001_2009_10_05 (41D, 225E), 
. . . . Kenya0005_2009_10_06 (225E, syn377I),
. . . . Kenya0006_2009_10_06 (syn59N, 225E),
. . . . Kenya0013_2009_10_09 (syn215P, 225E),
. . . . Kenya0024_2009_10_14 (225E, syn377I),
. . . . Kenya0042_2009_10_22 (
. . . . . . . . 128D [H5N1],
. . . . . . . . . . . [GermanyBY74_2009
. . . . . . . . . . . . . . . . . with 128D, 225E and 226R,
. . . . . . . . . . . Netherlands1064b_2009_09_01 with 225G GGa,
. . . . . . . . . . . Oz_Victoria800_2010_06_02 with 502K,
. . . . . . . . . . . SingSS003_2010_04 with 225G,
. . . . . . . . . . . SingSS004_2010_04 with 225G],
. . . . . . . . 225E),
. . . . Kenya0066_2009_10_30 (225E, 281I),
. . . . KenyaKapenguria1_2009_10_27_bris (
. . . . . . . . syn109S [H2, H3N8, H9N2, H11]
. . . . . . . . syn135V,
. . . . . . . . 225E),
. . . . FL_Pen210_2009_11_10 (
. . . . . . . . syn143G,
. . . . . . . . 225E,
. . . . . . . . 300S,
 . . . . . . . syn359E [H5N1, H7N7, H11],
. . . . . . . . . . . . . . . [RussiaChita_8_2009_11_02,
. . . . . . . . . . . . . . RussiaStPeterOb_SEV_2009_08_05,
. . . . . . . . . . . . . . Boston103_2009_06_15]),
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . IndiaBlore236_2009_06_xL with 226R,
. . . . . . . . . . . . . . SouthCarolina18_2009_09_16_VxX),
. . . . Vienna294_2009_11_25 (
. . . . . . . . syn143G,
. . . . . . . . 225E,
. . . . . . . . syn286K,
. . . . . . . . 298V [H3N8, H9N2]),
. . . . Athens262_2009_12_13 (
. . . . . . . . 225E,
. . . . . . . . 253I [swine],
. . . . . . . . 530L),
. . . . Athens269_2009_12_15
. . . . . . . . 225E,
. . . . . . . . 530L),
. . . . Milan326_2009_10_14  (
. . . . . . . . syn190D,
. . . . . . . . syn196Q,
. . . . . . . . 225E,
. . . . . . . . 268L, 
. . . . . . . . syn286K,
. . . . . . . . 298V [H3N8, H9N2]),
. . . . Ancona69 (300S, 352F, 359D, 363A),
. . . . Ancona86 (252M, 300S),
. . . . Netherlands1324_2009_11_10 (
. . . . . . . . syn71E [H6N1],
. . . . . . . . . . . . [NY4566_2009_07_08,
. . . . . . . . . . . . WiscD0675_2009_10_12,
. . . . . . . . . . . . WiscD0891_2009_09_26,
. . . . . . . . . . . . WiscD1237_2009_09_22,
. . . . . . . . . . . . EuropeGeorgia670_2010_02_04,
. . . . . . . . . . . . Greece384_2009_07_01,
. . . . . . . . . . . . MoscowOb_STV_2009_11_09_f with 225N,
. . . . . . . . . . . . MoscowOb_ZNF_2009_11_24_xL_f,
. . . . . . . . . . . . Astrakhan_CHRM_2009_11_24_xL_f,
. . . . . . . . . . . . Voronezh01_2009_11_30_xL with 225G,
. . . . . . . . . . . . Ivanovo_STV1_2009_11_21 with 225G,
. . . . . . . . . . . . Ulyanovsk_OAA_2009_11_21,
. . . . . . . . . . . . Russia19_2009_11_01_xL,
. . . . . . . . . . . . Russia149_2009_11_01_xL,
. . . . . . . . . . . . GuangxiQinnan133_2010_01_13],
. . . . . . . . syn75T,
. . . . . . . . 225E,
. . . . . . . . syn286K [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . . . . . . . CatNS2001_2009_08_03 with 225G (GGa),
. . . . . . . . . . . . . . . Milan326_2009_10_14,
. . . . . . . . . . . . . . . Vienna294_2009_11_25,
. . . . . . . . . . . . . . . CatS2143_2009_12_21,
. . . . . . . . . . . . . . . Barcelona_190_2009_12_29,
. . . . . . . . . . . . . . . GermanyBY74_2009
. . . . . . . . . . . . . . . . . . . . . . . with 128D, 225E and 226R,
. . . . . . . . . . . . . . . ShanghaiP1_2009_09_21]),
. . . . Netherlands2445b_2009_11_23 (
. . . . . . . . syn151L,
. . . . . . . . syn286K,
. . . . . . . . 454R [H5, tn],
. . . . . . . . syn466G [1918]),
. . . . Barcelona_190_2009_12_29 (syn105R, syn286K),
. . . . CatS1748_2009_11_09 (
. . . . . . . . . . . . . . . 34K,
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . 225E,
. . . . . . . . . . . . . . . 298V [H3N8, H9N2],
. . . . . . . . . . . . . . . syn316R,
. . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . 454N),
. . . . CatS2143_2009_12_21 (
. . . . . . . . . . . . . . . 33A,
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . 173E,
. . . . . . . . . . . . . . . 225E,
. . . . . . . . . . . . . . . syn286K,
. . . . . . . . . . . . . . . 298V [H3N8, H9N2],
. . . . . . . . . . . . . . . syn508L),
. . . . Denmark1341_2009_10_14 (
. . . . . . . . . . . . . . . 158E [H3N8, H5N1],
. . . . . . . . . . . . . . . 225E,
. . . . . . . . . . . . . . . 264V [swNC13598_2010_03_09_f_xL
. . . . . . . . . . . . . . . . . . . . . . . . with 15 HA + 4 NA revisions]),
. . . . Cyprus5870_2010 (208K, 214R, 324I),
. . . . Cologne_136_2009_11_30 (
. . . . . . . . syn22V,
. . . . . . . . 225E,
. . . . . . . . 377K [H9N2],
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . IndiaBlore236_2009_06 with 226R,
. . . . . . . . . . . . . . SouthCarolina18_2009_09_16_VxX,
. . . . . . . . . . . . . . FL_Pen210_2009_11_10],
. . . . . . . . syn505G),
. . . . ENG634_2009_07 (syn269I, syn403L), ENG675_2009_07 (0),
. . . . ENG92860032_2009_07 (syn366A),
. . . . LaReunion3479, Morocco1088H (300S),
. . . . StPetersburg5_2009_07_17 (
. . . . . . . . syn1A [Utah32_2009_10_14,
. . . . . . . . . . . . . RussiaStPeterRII5_2009_08_13],
. . . . . . . . 8M,
. . . . . . . . 225E,
. . . . . . . . syn408E),
. . . . Yaroslavl_KMP_2009_08_25 (
. . . . . . . . 8V [IndiaJalna9436_2009_08_30 with 226R,
. . . . . . . . . .  NY7216_2009_12_21 with 225G,
. . . . . . . . . .  Utah32_2009_10_14],
. . . . . . . . syn147F [H3N8 Avian, H4, H5, H6, H11],
. . . . . . . . . . . . . . [IndiaJalna9436_2009_08_30 with 226R,
. . . . . . . . . . . . . . IndiaPune21115_2009_12,
. . . . . . . . . . . . . . Athens943_2009_06_12,
. . . . . . . . . . . . . . CalifVRDL99_2009_11_05,
. . . . . . . . . . . . . . Texas44301765_2009_08_30],
. . . . . . . . 225E,
. . . . . . . . syn286K,
. . . . . . . . 298V,
. . . . . . . . 512K,
. . . . . . . . syn542S [H2, H5N1, H9N2]),
. . . . HiroshimaC309 (
. . . . . . . . syn116R, 158E [H3N8, H5N1], syn206T, 300S, 301V mix, syn398E)
225E (GAg)
. . . . OhioAF2526_2009_12_01,
. . . . RomaniaIalomita3040_2009_09_12,
. . . . CatS1453, CatS1490, CatNS5408,
. . . . Guangdong1998, Guangdong2221
225G (GgT)
. . . . SpainCastLaManchaRR7050_62F_2011_01_07 (
. . . . . . . . HA truncated prior to aa23,
. . . . . . . . syn55L,
. . . . . . . . 181D [Unique to GISAID],
. . . . . . . . 188T,
. . . . . . . . 199G [Unique to GISAID],
. . . . . . . . 219T,
. . . . . . . . 225G,
. . . . . . . . syn264A,
. . . . . . . . HA truncated after aa335),
. . . . Nanjing1_2010_06_30 (
. . . . . . . . 131P,
. . . . . . . . 158E [H3N8, H5N1],
. . . . . . . . 225G,
. . . . . . . . 454G [Unique to PF11],
. . . . . . . . 488N [H3N8 2009, H6, H9N2, NewJersey01_2010_01_01]),
. . . . Nanjing2_2010_06_30 (
. . . . . . . . 131P,
. . . . . . . . 158E [H3N8, H5N1],
. . . . . . . . 225G,
. . . . . . . . 454G [Unique to PF11],
. . . . . . . . 488N [H3N8 2009, H6, H9N2, NewJersey01_2010_01_01]),
. . . . JiangsuS61_2009_11_10 (
. . . . . . . . 54R,
. . . . . . . . 84G [Unique to GenBank PF11],
. . . . . . . . 131P,
. . . . . . . . 158E [H3N8, H5N1],
. . . . . . . . 211R [swOR4060_2009_12_31],
. . . . . . . . 225G,
. . . . . . . . syn319T [MississippiAF2473_2010_03_04 with 60T, 225E,
. . . . . . . . . . . . . . . FloridaAF2199_2010_03_11 with 60T, 225E,
. . . . . . . . . . . . . . . YaroslavlIIV196_2009_12_04_f with 225G
. . . . . . . . . . . . . . . SpainCatS1236_2009_08_13 with 225E,
. . . . . . . . . . . . . . . Finland612_2009_07_21 with 225E,
. . . . . . . . . . . . . . . KazAstana818_2009_07,
. . . . . . . . . . . . . . . KazAlmati01_2009 with 225E],
. . . . . . . . 454G [Unique to PF11 Nanjing],
. . . . . . . . 488N [H3N8 2009, H6, H9N2, NewJersey01_2010_01_01]),
. . . . JiangsuS62_2009_11_10 (
. . . . . . . . 60T [MississippiAF2473_2010_03_04 with 225E, syn319T,
. . . . . . . . . . . FloridaAF2199_2010_03_11 with 225E, syn319T],
. . . . . . . . 131P,
. . . . . . . . 158E [H3N8, H5N1],
. . . . . . . . 225G,
. . . . . . . . 454G [Unique to PF11 Nanjing],
. . . . . . . . 481G,
. . . . . . . . 488N [H3N8 2009, H6, H9N2, NewJersey01_2010_01_01]),
. . . . CalifVRDL131_2009_12_30 (
. . . . . . . . 225G,
. . . . . . . . syn256Y [H6N1],
. . . . . . . . syn283Q [H5, H6, H9N2],
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . 377K [H9N2],
. . . . . . . . syn455Q [H2, H3N8, H4, H5, H6, H7N3, H7N7]),
. . . . CalifVRDL7_2009_06_17  (syn12A, 186P, 206T, 225G),
. . . . NY7216_2009_12_21 (
. . . . . . . . 8V [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . .  IndiaJalna9436_2009_08_30 with 226R,
. . . . . . . . . .  Utah32_2009_10_14],
. . . . . . . . syn53L,
. . . . . . . . 148F,
. . . . . . . . 225G,
. . . . . . . . syn232Y,
. . . . . . . . 501K),
. . . . Texas04_2009_04_14 (
. . . . . . . . 206S,
. . . . . . . . 225G mix,
. . . . . . . . 226R mix,
. . . . . . . . syn377E [H5N1],
. . . . . . . . syn456L,
. . . . . . . . syn507K),
. . . . Texas05_2009_04_15 (
. . . . . . . . 206S, 225G, syn377E [H5N1], syn456L, syn507K),
. . . . Texas10_2009_04_23 (
. . . . . . . . 206S, 225G mix, syn377E [H5N1], syn456L, syn507K),
. . . . Texas11_2009_04_23 (
. . . . . . . . 206S, 225G, syn377E [H5N1], syn456L, syn507K),
. . . . Texas42291877_2009_06_29 (206T, 225G mix),
. . . . Utah42_2009_07_24 (
. . . . . . . . . . . . . . . 25R [Russia149_2009_11_01_xL,
. . . . . . . . . . . . . . . . . .Texas extensive (12),
. . . . . . . . . . . . . . . . . .Afghanistan (2),
. . . . . . . . . . . . . . . . . .SouthCarolina02E3_2010_03_05],
. . . . . . . . . . . . . . . syn99I,
. . . . . . . . . . . . . . . syn193S,
. . . . . . . . . . . . . . . 225G / 225N / 225S (rrT),
. . . . . . . . . . . . . . . syn419L [H5N1],
. . . . . . . . . . . . . . . syn429L (cTG) [H3N8, H5N1]),
. . . . Utah42_M1_2009_07_24 (
. . . . . . . . . . . . . . . 25R [Russia149_2009_11_01_xL,
. . . . . . . . . . . . . . . . . .Texas extensive (12),
. . . . . . . . . . . . . . . . . .Afghanistan (2),
. . . . . . . . . . . . . . . . . .SouthCarolina02E3_2010_03_05],
. . . . . . . . . . . . . . . syn99I,
. . . . . . . . . . . . . . . 143E,
. . . . . . . . . . . . . . . syn193S,
. . . . . . . . . . . . . . . 225G,
. . . . . . . . . . . . . . . syn419L [H5N1],
. . . . . . . . . . . . . . . syn429L (cTG) [H3N8, H5N1]),
. . . . UkrChernihiv857_2009_11_14_xL_f (
. . . . . . . . 186P,
. . . . . . . . 225G mix wt,
. . . . . . . . syn238E,
. . . . . . . . 252M,
. . . . . . . . 324I,
. . . . . . . . syn413K,
. . . . . . . . syn431L,
. . . . . . . . syn484N),
. . . . UkrTernopilN10_2009_10_28_xL_f  (
. . . . . . . . 111L,
. . . . . . . . syn168Y [H9N2],
. . . . . . . . 225G,
. . . . . . . . syn413K [H9N2],
. . . . . . . . 502K [Oz_Victoria800_2010_06_02,
. . . . . . . . . . . SingGP2362_2010_05_18,
. . . . . . . . . . . Scandinavia (7),
. . . . . . . . . . . CalifVRDL2_2010_01_11,
. . . . . . . . . . . California33_2009_08_06,
. . . . . . . . . . . Michigan21_2009_08_07,
. . . . . . . . . . . SouthCarolina36_2009_09_02,
. . . . . . . . . . . SouthCarolina38_2009_09_17,
. . . . . . . . . . . Haiti534_2009_10_19,
. . . . . . . . . . . AlgeriaG2902_2009_12_09 mix with 225E,
. . . . . . . . . . . Egypt114_2009_12_06 with 225E,
. . . . . . . . . . . JapanPR1070_2009_07_10,
. . . . . . . . . . . ThailandTHB0438_2009_07_28,
. . . . . . . . . . . Jiangyin34_2009_08_16,
. . . . . . . . . . . GuangxiLongan1870_2009_12_16]),
. . . . UkrZakarpatska830_2009_11_12_f (
. . . . . . . . syn48R [Norway1359_2009_05_16,
. . . . . . . . . . . . .  IndiaPune10278_2009_09],
. . . . . . . . syn92T,
. . . . . . . . syn168Y [H9N2],
. . . . . . . . syn190D,
. . . . . . . . 225G mix,
. . . . . . . . syn327I [Vienna291_2009_11_19],
. . . . . . . . truncated HA with NA syn407V),
. . . . UkrSumy797_2009_11_13_f  (
. . . . . . . . syn2N [SingON2416_2009_12_15,
. . . . . . . . . . . . . MongoliaJP5756_2009_10_15,
. . . . . . . . . . . . . IndiaPune10604_2009_09, et al],
. . . . . . . . 193G [Calif_SD04_2009_10_12,
. . . . . . . . . . . . Texas42173957_2009_06_17, et al],
. . . . . . . . 225G mix,
. . . . . . . . truncated HA with no NA),
. . . . UkrDnip273 (GgT mix),
. . . . UkrLvivN6_26M_2009_10_27_xL_VxX_f (
. . . . . . . . 225G, syn413K [H9N2]),
. . . . . . . . Low Reactor
. . . . UkrLvivN6_2009_10_27_C3C1_xL_f (
. . . . . . . . 158E, 225G, syn413K [H9N2]),
. . . . . . . . ** untested for Low Reactor **
. . . . UkrIvanoFrk240_2009_10_29_xL_f  (
. . . . . . . . 225G, syn413K),
. . . . . . . . ** untested for Low Reactor **
. . . . UkrVolin226_2009_11_05_xL (
. . . . . . . . 225G, syn413K),
. . . . . . . . ** untested for Low Reactor **
. . . . BZ_RioJan5826_2009_07_28 (
. . . . . . . . 225G, syn413K),
. . . . . . . . ** untested for Low Reactor **
. . . . BZ_Bahia15525_2009_09_05_42M_f (
. . . . . . . . syn33V,
. . . . . . . . 100N [H9N2],
. . . . . . . . syn215P,
. . . . . . . . 225G (rrT),
. . . . . . . . syn478C mix [H5N1],
. . . . . . . . syn499N mix,
. . . . . . . . 511I mix [H5N1]),
. . . . ArgentinaHNRG16_2009_06_29 (
. . . . . . . . 206T,
. . . . . . . . 225G,
. . . . . . . . syn418F),
. . . . Saratov07E2_24X_2010_02_01_xL_VxX (
. . . . . . . . 158E mix,
. . . . . . . . 225G,
. . . . . . . . syn235T [H3N8],
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn419L (CTt),
. . . . . . . . syn484N),
. . . . Saratov07E2E1_24X_2010_02_01_ xL_VxX (
. . . . . . . . 47I mix,
. . . . . . . . 157E,
. . . . . . . . 158E mix,
. . . . . . . . 225G,
. . . . . . . . syn235T [H3N8],
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn419L (CTt),
. . . . . . . . syn484N),
. . . . StPete204E2_2010_02_08_ xL_VxX (
. . . . . . . . 157E,
. . . . . . . . 225G,
. . . . . . . . syn238E,
. . . . . . . . syn240G
. . . . . . . . 324I,
. . . . . . . . 275F,
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn484N),
. . . . Ivanovo_RNA_2009_11_24_xL_f  (
. . . . . . . . 0I [Latvia12_649_2009_12_09,
. . . . . . . . . NY7426_2009_12_08,
. . . . . . . . . Tambov_FOS_2009_12_01_xL,
. . . . . . . . . Slovenia5555_2009_12,
. . . . . . . . . Slovenia5559_2009_12,
. . . . . . . . . Stockholm107_2009_11_24,
. . . . . . . . . GD_Yuncheng51_2009_11_19,
. . . . . . . . . Guangdong1271_2009_11_19,
. . . . . . . . . Austria528378_2009_11_19,
. . . . . . . . . Latvia11_1133_2009_11_16,
. . . . . . . . . Latvia11_1133M_2009_11_16,
. . . . . . . . . Latvia11_575_2009_11_11,
. . . . . . . . . England94600039_2009_10_27,
. . . . . . . . . SwedenUmea8_2009_10_07,
. . . . . . . . . Managua2323_02_2009_08_18,
. . . . . . . . . Utah20_C2_2_2009_07_25_VxX with 159D, 227G
. . . . . . . . . Texas42163291_2009_06_16,
. . . . . . . . . Marseille3416_2009],
. . . . . . . . syn168Y [H9N2],
. . . . . . . . 225G/225N/225D wt,
. . . . . . . . 269V [H9N2, H11],
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn426A [H2, H4, H5, H6, H7N7, H9N2],
. . . . . . . . . . . . . [Hiroshima645_2009_12_12,
. . . . . . . . . . . . . Tambov_FOS_2009_12_01_xL],
. . . . . . . . syn542S [H2, H5N1, H9N2]),
. . . . Salekhard01_2009_xL_f (
. . . . . . . . . . . 89N,
. . . . . . . . . . . 158E [H3N8, H5N1],
. . . . . . . . . . . 165N [H9N2],
. . . . . . . . . . . syn168Y [H9N2],
. . . . . . . . . . . 225G,
. . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . 444D),
. . . . TverIIV183_2009_11_25_xL_f  (
. . . . . . . . . . . syn34N,
. . . . . . . . . . . syn168Y [H9N2],
. . . . . . . . . . . 225G,
. . . . . . . . . . . syn408E,
. . . . . . . . . . . syn413K [H9N2]),
. . . . OrenburgIIV13E_2010_03_02_xL_f (
. . . . . . . . #11T,
. . . . . . . . 122N,
. . . . . . . . 165N [H9N2],
. . . . . . . . syn168Y [H9N2],
. . . . . . . . 225G,
. . . . . . . . 238K,
. . . . . . . . syn413K [H2, H5N1, H9N2]),
. . . . OrenburgIIV13_2010_03_02_xL_f (
. . . . . . . . #11T,
. . . . . . . . 165N [H9N2],
. . . . . . . . syn168Y [H9N2],
. . . . . . . . 225G,
. . . . . . . . 238K,
. . . . . . . . syn413K [H2, H5N1, H9N2]),
. . . . Orenburg_VNV_2009_08_06_xL (
. . . . . . . . . . . #2I [H7N7],
. . . . . . . . . . . syn6L [H3N8],
. . . . . . . . . . . 19I [H3N8],
. . . . . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . . . . 225G,
. . . . . . . . . . . 324I,
. . . . . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . . . . syn542S [H2, H5N1, H9N2]),
. . . . AnadyrIIV177_2009_12_04_xL_f (
. . . . . . . . . . . 212T [H3N8],
. . . . . . . . . . . 225G,
. . . . . . . . . . . syn238E [H2, H4],
. . . . . . . . . . . 324I,
. . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . syn484N [H3N8, H4, H5, H6, H7N7, H9N2, H11]),
. . . . YaroslavlIIV196_2009_12_04_f (
. . . . . . . . . . . syn7C,
. . . . . . . . . . . 89G [H7N7],
. . . . . . . . . . . syn159N [H3N8, H9N2],
. . . . . . . . . . . 225G,
. . . . . . . . . . . syn297N [H5N1],
. . . . . . . . . . . syn319T [H5N1],
. . . . . . . . . . . syn428L [H5N1]),
. . . . Yaroslavl_CHMV_2009_11_10_f (
. . . . . . . . . . . 224K,
. . . . . . . . . . . 225G mix,
. . . . . . . . . . . 286N [H3N8],
. . . . . . . . . . . 296H,
. . . . . . . . . . . syn348V [IndiaPune10604_2009_09,
. . . . . . . . . . . . . . . . . . BZ_SaoPaulo53823_2009_08_01_f,
. . . . . . . . . . . . . . . . . . Eng662_2009_08],
. . . . . . . . . . . syn448L,
. . . . . . . . . . . syn490P,
. . . . . . . . . . . syn511T,
. . . . . . . . . . . syn542S [H2, H5, H9N2]),
. . . . Orel_AAP_2009_f mix (
. . . . . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . . . . 224K,
. . . . . . . . . . . 225G (RRt),
. . . . . . . . . . . syn310V [H3N8, H5N1 (E/A/H), H6, H7N7, H11],
. . . . . . . . . . . 324I,
. . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . syn542S [H2, H5, H9N2],
. . . . Moscow_BVA_2009_10_24_xL_f (
. . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . 225G,
. . . . . . . . 324I,
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn441H [H2, H5N1, H6, H9N2, H11],
. . . . . . . . syn542S [H2, H5N1, H9N2]),
. . . . Ivanovo_STV1_2009_11_21 (
. . . . . . . . syn71E [H6N1],
. . . . . . . . syn109S [H2, H3N8, H9N2, H11]),
. . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . 225G,
. . . . . . . . 324I,
. . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn542S [H2, H5N1, H9N2],
. . . . . . . . no NA),
. . . . Voronezh01_2009_11_30_xL (
. . . . . . . . 67S,
. . . . . . . . syn71E [H6N1],
. . . . . . . . syn109S [H2, H3N8, H9N2, H11],
. . . . . . . . 143E,
. . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . 225G,
. . . . . . . . 324I,
. . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . syn382V,
. . . . . . . . syn413K [H2, H5N1, H9N2]),
. . . . Lipetsk_BVV_2009_xL_f (
. . . . . . . . . . . syn177L [H3N8, H6, H7N7],
. . . . . . . . . . . 225G,
. . . . . . . . . . . syn238E [H2, H4],
. . . . . . . . . . . syn240G [H3N8, H6, H9N2, H11],
. . . . . . . . . . . 324I,
. . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . syn542S [H2, H5, H9N2]),
. . . . Ulyanovsk_BAA_2009_11_23 (
. . . . . . . . . . . 146N,
. . . . . . . . . . . 225G,
. . . . . . . . . . . syn372Q [H2, H3N8, H4, H5, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . syn542S [H2, H5, H9N2]),
. . . . Moldova3245_2009_11_25 (
. . . . . . . . 155I,
. . . . . . . . 225G,
. . . . . . . . 324I,
. . . . . . . . HA truncated after aa396),
. . . . Moldova3163_2009_11_23 (
. . . . . . . . 155I,
. . . . . . . . 225G,
. . . . . . . . 324I,
. . . . . . . . syn397G,
. . . . . . . . HA truncated after aa397),
. . . . Moldova351_2010_01_18 (
. . . . . . . . syn71E,
. . . . . . . . syn104L (tTA) [NY3835_2010_01_27,
. . . . . . . . . . . . . . . . . . MexicoCityWR1708T_2009_10_09,
. . . . . . . . . . . . . . . . . . NY5173_2009_10_17,
. . . . . . . . . . . . . . . . . . NY5620_2009_11_02,
. . . . . . . . . . . . . . . . . . Connecticut13_2009_09_13,
. . . . . . . . . . . . . . . . . . NY3866_2010_01_29,
. . . . . . . . . . . . . . . . . . CalifVRDL132_2009_12_30 (CTG),
. . . . . . . . . . . . . . . . . . Vermont23_2009_11_03 (CTg),
. . . . . . . . . . . . . . . . . . Hawaii28_2009_10_10 (CTg),
. . . . . . . . . . . . . . . . . . Hawaii27_2009_10_09 (CTg),
. . . . . . . . . . . . . . . . . . Texas45122538_2009_09_12 (CTg),
. . . . . . . . . . . . . . . . . . WiscD0410_2009_09_24 (CTg),
. . . . . . . . . . . . . . . . . . WiscD1355_2009_09_21 (CTg),
. . . . . . . . . . . . . . . . . . IndiaPune807_2009_07 (CTg)],
. . . . . . . . syn109S,
. . . . . . . . syn177L (CTa),
. . . . . . . . 225G (rrT mix),
. . . . . . . . syn255R,
. . . . . . . . 324I,
. . . . . . . . syn355H [H2, H5N1, H6N1],
. . . . . . . . . . . . . . [MoscowOb_ZNF_2009_11_24_xL_f,
. . . . . . . . . . . . . . MoscowOb_STV_2009_11_09_f with 225N,
. . . . . . . . . . . . . . Ivanovo_STV1_2009_11_21 with 225G,
. . . . . . . . . . . . . . IndiaPune6196_2009_08,
. . . . . . . . . . . . . . WiscD0589_2009_06_03],
. . . . . . . . HA truncated after aa394),
. . . . Iran1519_2009_12_23 (
. . . . . . . . . . . syn187T [S5, 1918],
. . . . . . . . . . . syn194L,
. . . . . . . . . . . 225G,
. . . . . . . . . . . 324I,
. . . . . . . . . . . 327V,
. . . . . . . . . . . syn367D [S9, S7, M7, 1918, WSN33, tn],
. . . . . . . . . . . syn374A [H5], 377K [H9N2]),
. . . . TurkeyTR20 (324I),
. . . . Tunisia1064_2010_01_18 (syn30T, syn181G, syn182I, 208K, 318S),
. . . . Thessaloniki2812_2009_11_22 (
. . . . . . . . . . . syn177L [H3N8, H6, H7N7], syn310V, 324I),
. . . . Thessaloniki2502_2009_11_17,
. . . . Thessaloniki791_2010 mix (
. . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . syn171D [M7, H3N8, H9N2], 186P,
. . . . . . . . . . . syn233Y [H9N2], 324I, 377K [H9N2]),
. . . . Thessaloniki206_2010_01_12,
. . . . Thessaloniki225_2010_01_13_TmX,
. . . . Kastoria2636_2009_11_18 (50I),
. . . . Kavala219_2010_01_12 (2E, 28P, 188N, 296H),
. . . . Latvia121488_2009 (377K [H9N2]),
. . . . Georgia4484_2009 (158E [H3N8, H5N1], 377K [H9N2]),
. . . . Finland648_2009_11_19 (
. . . . . . . . 129Q,
. . . . . . . . syn216E,
. . . . . . . . 225G mix wt,
. . . . . . . . 324I,
. . . . . . . . syn413K)
. . . . Iceland162M, Iceland162Siat3, Denmark1900,
. . . . Netherlands2243_2009_11_17_xL (
. . . . . . . . . . . 130E mix, 158E [H3N8, H5N1], syn413K [H9N2]),
. . . . China mix,
. . . . SingSS003_2010_04 (
. . . . . . . . syn44L,
. . . . . . . . syn94Y,
. . . . . . . . syn106E,
. . . . . . . . 128D [H5N1],
. . . . . . . . . . . [GermanyBY74_2009
. . . . . . . . . . . . . . . . . with 128D, 225E and 226R,
. . . . . . . . . . . Kenya0042_2009_10_22 with 225E,
. . . . . . . . . . . Netherlands1064b_2009_09_01 with 225G GGa,
. . . . . . . . . . . Oz_Victoria800_2010_06_02 with 502K,
. . . . . . . . . . . SingSS004_2010_04 with 225G],
. . . . . . . . 225G,
. . . . . . . . syn295F,
. . . . . . . . 377K [H9N2]),
. . . . SingSS004_2010_04 (
. . . . . . . . syn44L,
. . . . . . . . 51T,
. . . . . . . . syn106E,
. . . . . . . . 128D [H5N1],
. . . . . . . . . . . [GermanyBY74_2009
. . . . . . . . . . . . . . . . . with 128D, 225E and 226R,
. . . . . . . . . . . Kenya0042_2009_10_22 with 225E,
. . . . . . . . . . . Netherlands1064b_2009_09_01 with 225G GGa,
. . . . . . . . . . . Oz_Victoria800_2010_06_02 with 502K,
. . . . . . . . . . . SingSS003_2010_04 with 225G],
. . . . . . . . 225G,
. . . . . . . . 377K [H9N2]),
. . . . IndiaPune9355_2009_08 (
. . . . . . . . #10T [KyrgyzstanBishkekWR0881T_2009_12_02,
. . . . . . . . . . . . Brussels243_2009_11_09 with 89G,
. . . . . . . . . . . . IndiaPune8489_2009_08 with 237I,
. . . . . . . . . . . . IndiaPune6447_2009_08],
. . . . . . . . syn#4Y [GermanyBY74_2009 with 225G & 226R,
. . . . . . . . . . . . . FL_Pensacola40_2009_11_09,
. . . . . . . . . . . . . IndiaPune8489_2009_08 with 237I,
. . . . . . . . . . . . . IndiaPune6447_2009_08],
. . . . . . . . 206T,
. . . . . . . . 225G,
. . . . . . . . syn372Q [H2, H3N8, H4, H5, H6, H7N3, H7N7, H9N2, H11]
. . . . . . . . . . . . . . [IndiaBlore236_2009_06_xL with 226R,
. . . . . . . . . . . . . . Ulyanovsk_SHTA_2009_10_31_f_225N,
. . . . . . . . . . . . . . Orenburg2974_2009_11_16_xL,
. . . . . . . . . . . . . . Russia fatal extensive,
. . . . . . . . . . . . . . swIowa35572_2009_12_16,
. . . . . . . . . . . . . . NagasakiHA10_22_2010_03_01],
. . . . . . . . 373K,
. . . . . . . . syn413K [H9N2],
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . . . .  [IndiaBlore236_2009_06 with 226R,
. . . . . . . . . . . . .  SouthCarolina18_2009_09_16_VxX,
. . . . . . . . . . . . .  FL_Pen210_2009_11_10],
. . . . . . . . 550T [Unique to India]),
. . . . IndiaPune10278_2009_09 (
. . . . . . . . syn48R [Norway1359_2009_05_16,
. . . . . . . . . . . . . . UkrZakarpatska830_2009_11_12_f, et al],
. . . . . . . . syn131S [Russia, Afghan, Kenya,
. . . . . . . . . . . . . . NY6943_2009_12_07_xL,
. . . . . . . . . . . . . . Wisconsin, California,
. . . . . . . . . . . . . . Nicaragua, Greece],
. . . . . . . . 206T,
. . . . . . . . 225G,
. . . . . . . . syn413K [H9N2],
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . IndiaBlore236_2009_06_xL with 226R,
. . . . . . . . . . . . . . SouthCarolina18_2009_09_16_VxX,
. . . . . . . . . . . . . . FL_Pen210_2009_11_10],
. . . . . . . . 550T [Unique to India]),
. . . . IndiaNsk10348_2009_09 (
. . . . . . . . . . . . . . . #12E, syn33V, 206S, 225G, 296H, syn406R, syn439D),
. . . . IndiaMum9312 (208K, 225G, syn385V),
. . . . UK_Glascow_SC10_2009_06 (syn65L [H3N8], 225G, 289V),
. . . . 1918,
. . . . H1N1 (1943, 46, 51),
. . . . NJ11_1976_X53A, S5,
. . . . H6N1,
. . . . H9N2
225G (Gga) ex225E with 300S,
. . . . RomaISS1897_2009_10_30  (syn171D [M7, H3N8, H9N2], 300S),
. . . . RomaISS1941_2009_08_25  (158E, syn171D [M7, H3N8, H9N2], 300S),
. . . . MexicoCityCIA10_2009_05_02_TmX (syn171D [M7, H3N8, H9N2], 300S),
. . . . MexicoCityCIA11_2009_05_03 (syn171D [M7, H3N8, H9N2], 300S),
. . . . EgyptVacsera138_2009_12 (300S),
. . . . EgyptN14644_2009_11_01 (300S),
. . . . H6N1
225G (Gga) ex225E without 300S
. . . . CatNS2001_2009_08_03 (
. . . . . . . . 225G, syn286K, 298V [H3N8, H9N2]),
. . . . CatNS2008_2009_08_03 (
. . . . . . . . 225G, syn286K, 298V [H3N8, H9N2]),
. . . . Netherlands1064b_2009_09_01 (
. . . . . . . . syn65L,
. . . . . . . . 128D [H5N1],
. . . . . . . . . . . [GermanyBY74_2009
. . . . . . . . . . . . . . . . . with 128D, 225E and 226R,
. . . . . . . . . . . Kenya0042_2009_10_22 with 225E,
. . . . . . . . . . . Oz_Victoria800_2010_06_02 with 502K,
. . . . . . . . . . . SingSS003_2010_04 with 225G,
. . . . . . . . . . . SingSS004_2010_04 with 225G],
. . . . . . . . 225G,
. . . . . . . . 254S,
. . . . . . . . syn286K),
. . . . Norway3206_3_2009_09_01 (140S, 225G)
225V (GtT)
. . . . swAlbertaOTH33_3_2009_05_03 (
. . . . . . . . syn81Y,
. . . . . . . . 173E,
. . . . . . . . 225V,
. . . . . . . . 253I,
. . . . . . . . 379A,
. . . . . . . . syn456L)
225Y (tAT)
. . . . Finland649_2009_11_28 (
. . . . . . . . syn49G,
. . . . . . . . syn216E,
. . . . . . . . 225Y mix wt (kAT),
. . . . . . . . 324I,
. . . . . . . . syn413K)
225E+226R
. . . . Russia (3),
. . . . GermanyBY74_2009 (
. . . . . . . . syn#4Y [IndiaPune9355_2009_08,
. . . . . . . . . . . . FL_Pensacola40_2009_11_09],
. . . . . . . . 128D [H5N1]
. . . . . . . . . . . [Oz_Victoria800_2010_06_02 with 502K,
. . . . . . . . . . . Kenya0042_2009_10_22 with 225E,
. . . . . . . . . . . Netherlands1064b_2009_09_01 with 225G GGa,
. . . . . . . . . . . SingSS003_2010_04 with 225G,
. . . . . . . . . . . SingSS004_2010_04 with 225G],
. . . . . . . . 225E,
. . . . . . . . 226R,
. . . . . . . . syn286K),
. . . . swMX4,
. . . . swItaly85437_2009_12_09 mix (syn40H, 300S, syn434N, syn474C, 530I)
226Q (CAA)
. . . . PF11 wt
. . . . H5N1 wt
226Q synonymous (CAg)
. . . . Alabama08_2009_12_04 (
. . . . . . . . 0A [Perm_ZTS_2009_11_30,
. . . . . . . . . . Belgorod01_2009_11_30,
. . . . . . . . . . Belgorod05_2009_11_30],
. . . . . . . . et al),
. . . . Texas45033567, Texas45131305,
. . . . Boston129_2009_06 (2E, 202I, 296H),
. . . . Boston138_2009_06 (2E, syn42N, syn251L [tn, H5N1], 296H, syn381K),
. . . . ShaiLuwan137_2010 mix (8V, 131P, 421V),
. . . . S7, M7, S5, tn
226R (CgA)
. . . . Alabama01_2010_01_04E2_xL (
. . . . . . . . . . . . . . . . . . 22I, syn111V [H9N2], syn157K [H9N2],
. . . . . . . . . . . . . . . . . . 176I [H9N2]),
. . . . Texas77_E3_2009_10_06 (
. . . . . . . . . . . . 159S, syn173G, 219V, 226R, syn246E, 275A, 377K [H9N2]),
. . . . Iran15583_2009_11_21 with 16 HA + 3 NA polymorphisms: (
. . . . . . . . . . . . . . . . . . syn21T, 80P, 149Q, 170H, syn210S [tn],
. . . . . . . . . . . . . . . . . . syn214K [H9N2], 226R, 227Q, 239L, syn254P [H5], 
. . . . . . . . . . . . . . . . . . 277N [H5N1, tn], 285T, 286T, syn290N,
. . . . . . . . . . . . . . . . . . syn361G [1918, WSN33, tn], 377K [H9N2]),
. . . . Iran16273_2009_11_22 (
. . . . . . . . . . . . . . . . . . syn55L [S9, H5N1], 141Y [S5, 1918, H5N1],
. . . . . . . . . . . . . . . . . . syn194L, 226R, 324I, 377K [H9N2],
. . . . . . . . . . . . . . . . . . syn461K [S9, S7, M7, S5, WSN33, H5, tn]),
. . . . Iran16245_2009_11_22 (syn214K, 226R, 377K [H9N2]),
. . . . Trabzon01 (Turkey), GermanyMVHGW4_2009_12,
. . . . Korea3623_2009_11_09 (131P, 280A),
. . . . CQNanchuan31_2010 (75A, 131P, 208K, 377K, 484S mix),
. . . . FJGulou1494_2010 (131P, 260I, 296H),
. . . . FJGulou1280_2010 (158E [H3N8, H5N1],  mix, syn413K),
. . . . FJGulou119_2010 (syn413K), FJGulou1155_2010 (syn413K),
. . . . GDLuohu1902_2009 (syn413K),
. . . . IndiaBlore236_2009_06_xL (
. . . . . . . . 226R,
. . . . . . . . syn372Q [H2, H3N8, H4, H5, H6, H7N3, H7N7, H9N2, H11]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . Ulyanovsk_SHTA_2009_10_31_f_225N,
. . . . . . . . . . . . . . Orenburg2974_2009_11_16_xL,
. . . . . . . . . . . . . . Russia fatal extensive,
. . . . . . . . . . . . . . swIowa35572_2009_12_16,
. . . . . . . . . . . . . . NagasakiHA10_22_2010_03_01]),
. . . . . . . . syn413K [H9N2],
. . . . . . . . 454N [H7N3, H7N7, H9N2]
. . . . . . . . . . . . . . [IndiaPune9355_2009_08 with 225G,
. . . . . . . . . . . . . . SouthCarolina18_2009_09_16_VxX,
. . . . . . . . . . . . . . FL_Pen210_2009_11_10],
. . . . . . . . 550T [Unique to India]),
. . . . IndiaJalna9436_2009_08_30  (
. . . . . . . . 8V [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . .  NY7216_2009_12_21 with 225G,
. . . . . . . . . .  Utah32_2009_10_14],
. . . . . . . . syn147F [H3N8 Avian, H4, H5, H6, H11],
. . . . . . . . . . . . . . [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . . . . . . IndiaPune21115_2009_12,
. . . . . . . . . . . . . . Athens943_2009_06_12,
. . . . . . . . . . . . . . CalifVRDL99_2009_11_05,
. . . . . . . . . . . . . . Texas44301765_2009_08_30],
. . . . . . . . syn210S,
. . . . . . . . 226R),
. . . . catItaly304678_2_2009_12_17_f,
. . . . swThaiCURA4_2009_11 (263D, syn317L, 318T, syn350G, 392H,
. . . . . . . . . . . . . . . . . . . . . . 414I, syn484N)
227E synonymous (GAg) Wisc (10), Texas45130742,
. . . . BeijingSE2577_2009_11 (131P, syn485G),
. . . . Paris2573, Paris2590,
. . . . Avian H2 (Ggg)
227A
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . tkDeutsche, swDeutsche,
. . . . NJ11_1976_X53A, 1918,
. . . . H1N1 (1943, 46, 51)
227K (aAA)
. . . . HunYueyanglou1432E2_2009 (
. . . . . . . . 131P,
. . . . . . . . 158E,
. . . . . . . . syn166K
. . . . . . . . 227K mix),
. . . . H6N1 qlShantou2370_2001, chkShantou3605_2001
227V (GtA) RomaISS50
227G (GgA)
. . . . Utah20_C2_2_2009_07_25_VxX (
. . . . . . . . #12E,
. . . . . . . . 0I [Latvia12_649_2009_12_09,
. . . . . . . . . NY7426_2009_12_08,
. . . . . . . . . Tambov_FOS_2009_12_01_xL,
. . . . . . . . . Slovenia5555_2009_12,
. . . . . . . . . Slovenia5559_2009_12,
. . . . . . . . . Ivanovo_RNA_2009_11_24_xL_f with 225G, 225N,
. . . . . . . . . Stockholm107_2009_11_24,
. . . . . . . . . GD_Yuncheng51_2009_11_19,
. . . . . . . . . Guangdong1271_2009_11_19,
. . . . . . . . . Austria528378_2009_11_19,
. . . . . . . . . Latvia11_1133_2009_11_16,
. . . . . . . . . Latvia11_1133M_2009_11_16,
. . . . . . . . . Latvia11_575_2009_11_11,
. . . . . . . . . England94600039_2009_10_27,
. . . . . . . . . SwedenUmea8_2009_10_07,
. . . . . . . . . Managua2323_02_2009_08_18,
. . . . . . . . . Texas42163291_2009_06_16,
. . . . . . . . . Marseille3416_2009],
. . . . . . . . 206S,
. . . . . . . . 227G mix,
. . . . . . . . 296H,
. . . . . . . . syn388K [H5N1],
. . . . . . . . 470I),
. . . . Avian H2
227Q (cAA)
. . . . Iran15583_2009_11_21 with 16 HA + 3 NA polymorphisms:
. . . . . . . . . . . . . . . . .  (syn21T, 80P, 149Q, 170H, syn210S [tn],
. . . . . . . . . . . . . . . . . . syn214K [H9N2], 226R, 227Q, 239L, syn254P [H5],
. . . . . . . . . . . . . . . . . . 277N [H5, tn], 285T, 286T, syn290N,
. . . . . . . . . . . . . . . . . . syn361G [1918, WSN33, tn], 377K [H9N2]),
. . . . WSN33 cAt,
. . . . H3N8 ccA eqIndiaAhmedabad1_2009_04_26,
. . . . . . . . . . . . . mallMNsg00765_2008, npinCalif44221794_2006,
. . . . H6N1 cgA mallMaryland887_2002,
. . . . H9N2 cAg 70%,
. . . . H9N2 cAA ckAnhui2008_12_15 (9)
228G (GGG)
. . . . PF11 wt
. . . . WSN33, 1918
228G synonymous (GGa)
. . . . Arizona06, Lisboa108 (225E, syn346G),
. . . . Valladolid35 (35I [H5N1]),
. . . . GhanaFS1982_2009_11_16  (syn139C, 206T, 261K, 296H, syn346G,
. . . . . . . . . . . . . . . . . . . . . . . . 377K [H9N2]),
. . . . GhanaFS2206_2009_11_25  (syn139C, 206T, 261K, 296H, syn346G),
. . . . ShanxiPingding351_2009 (syn89D, 131P, syn173G, syn182I),
. . . . S9, S7, M7, S5,
. . . . H3N8 extensive Avian 2006-2008,
. . . . H5N1
228R (cGG)
. . . . IranShiraz1_2010_02 (
. . . . . . . . 88T,
. . . . . . . . 90K,
. . . . . . . . 91W,
. . . . . . . . syn218A [WSN33],
. . . . . . . . . . . . . . . [Nebraska02_2010_03_11
. . . . . . . . . . . . . . . . . . . . . .with 523A,
. . . . . . . . . . . . . . . CubaHabana2687_2009
. . . . . . . . . . . . . . . . . . . . . .with 221T]
. . . . . . . . 228R (cGG) [H9N2 2008 (AGA)],
. . . . . . . . 238Q [H10N7 2009],
. . . . . . . . 246Q,
. . . . . . . . 277N [H5N1, H10N7 2009],
. . . . . . . . . . . . . [Iran15583_2009_11_21,
. . . . . . . . . . . . . Wisconsin],
. . . . . . . . syn350G [swThaiCURA4_2009_11
. . . . . . . . . . . . . . . . . . . with 226R, syn484N])
. . . . H9N2 2008 (AGA)
229R synonymous (AGg)
. . . . swMX04 (225G, 226R),
. . . . SichuanDongqu1818 (syn33V, syn34N, 131P, 554R),
. . . . H3N8 extensive equine / canine 2006-2008,
. . . . . . . . . avian 2005-2008 North America,
. . . . . . . . . swine 2006 Asia,
. . . . H6N1
230M (ATG)
. . . . PF11 wt,
. . . . H3N8 ceiderNetherlands1_2006
230V (gTg)
. . . . H3N8 npinCalifHKWF792_2007
230I (ATc) Sask, S9, S7, H6N1 (4), H7N7
. . . . swIowa44837_1_2009_11_08_xL (
. . . . . . . . Hypermorphic HA recombinant on PF11 background
. . . . . . . . with multiple donation bases from S7 H1N1 and S7 & S5 H1N2:
. . . . . . . . ~ 92% Homology to nearest HA
. . . . . . . . with more than 100 changes including:
. . . . . . . . syn36L, syn38E, syn40H, syn41N, syn42G,
. . . . . . . . 48K [S7],
. . . . . . . . syn49G,
. . . . . . . . 50I [S7],
. . . . . . . . syn56G, syn58C, syn70C, syn86S, 92M,
. . . . . . . . 131S,
. . . . . . . . 132T [S7],
. . . . . . . . 156E [swCloppenIDT4777_S5_H1N2,
. . . . . . . . . . . . . swDoetIDT4735_S5_H1N2],
. . . . . . . . syn169I, syn170N, 171E,
. . . . . . . . 182V [S7],
. . . . . . . . . . . . . [NY7480_2010_03_01 with 253A],
. . . . . . . . 188R,
. . . . . . . . 189G [S7],
. . . . . . . . 193G,
. . . . . . . . 196H [S7],
. . . . . . . . 197H,
. . . . . . . . 198E [S7],
. . . . . . . . 199N [S7],
. . . . . . . . 214T [S7],
. . . . . . . . syn222K [S7],
. . . . . . . . syn224R [S7],
. . . . . . . . 225N [swCloppenIDT4777_S5_H1N2,
. . . . . . . . . . . . . swDoetIDT4735_S5_H1N2],
. . . . . . . . syn226Q [S7],
. . . . . . . . syn228G [S7],
. . . . . . . . 230I [S7],
. . . . . . . . syn232Y [S7],
. . . . . . . . syn235T (ACt) [S7],
. . . . . . . . 238D [H2N3, H7N3, H7N7, tn, swine],
. . . . . . . . . . . . . [RussiaBelgorod2_2010_03_15
. . . . . . . . . . . . . . . . . . with 158E, 225G, 230I],
. . . . . . . . 241Y,
. . . . . . . . 244I [S7],
. . . . . . . . syn246E [S7],
. . . . . . . . . . . . . . . [TexasAF2579_2009_10_04 with 230I],
. . . . . . . . 248N,
. . . . . . . . syn251L,
. . . . . . . . 253A [NY7480_2010_03_01 with 182V],
. . . . . . . . 260L [S7],
. . . . . . . . 263G,
. . . . . . . . 264F [S7],
. . . . . . . . 272N [S7],
. . . . . . . . 273A [S7],
. . . . . . . . 275M [S7],
. . . . . . . . 276G,
. . . . . . . . 277E [S7],
. . . . . . . . 280A [MI09_2007_H1N2],
. . . . . . . . 281N,
. . . . . . . . 298V [S7],
. . . . . . . . 305E [swCloppenIDT4777_S5_H1N2,
. . . . . . . . . . . . . swDoetIDT4735_S5_H1N2],
. . . . . . . . syn329S [S7],
. . . . . . . . syn346G [S7],
. . . . . . . . . . . . . . . [H3N2, H3N8, H5N1, H6N2, H6N4, H10N7],
. . . . . . . . . . . . . . [Fixed in non-PF11 Emergent swine lineages,
. . . . . . . . . . . . . . swNC19646_2010_04_20 with 158E,
. . . . . . . . . . . . . . Minnesota04_2010_03_22 with 230I,
. . . . . . . . . . . . . . Nevada01_2010_01_02,
. . . . . . . . . . . . . . Nevada20_2009_12_03,
. . . . . . . . . . . . . . Sachsen180_2009_12_02,
. . . . . . . . . . . . . . Lisboa108_2009_11_30 with 225E, syn228G,
. . . . . . . . . . . . . . GhanaFS2206_2009_11_25 with syn228G,
. . . . . . . . . . . . . . GhanaFS1982_2009_11_16 with syn228G,
. . . . . . . . . . . . . . NewMexico16MXC1_2009_11_07,
. . . . . . . . . . . . . . BZ_RioJaneiro7131_2009_08_01_f],
. . . . . . . . syn355H [MI09_2007_H1N2,
. . . . . . . . . . . . . . . . swCloppenIDT4777_S5_H1N2,
. . . . . . . . . . . . . . . . swDoetIDT4735_S5_H1N2],
. . . . . . . . syn361G [S7],
. . . . . . . . syn372Q [S7],
. . . . . . . . 376N [MI09_2007_H1N2,
. . . . . . . . . . . . swCloppenIDT4777_S5_H1N2,
. . . . . . . . . . . . swDoetIDT4735_S5_H1N2],
. . . . . . . . syn379T [S7],
. . . . . . . . . . . . . . . [Wisconsin06_2010_04_28],
. . . . . . . . syn381K [S7],
. . . . . . . . syn382V [S7],
. . . . . . . . syn385V [S7],
. . . . . . . . syn388K [S7],
. . . . . . . . syn390N [S7],
. . . . . . . . . . . . . . . [H2, H3N8, H5, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . [Calif09_2010_05_11],
. . . . . . . . syn391T [S7],
. . . . . . . . syn392Q [S7],
. . . . . . . . syn395A [S7],
. . . . . . . . syn396V [S7],
. . . . . . . . syn397G [S7],
. . . . . . . . syn399E [S7],
. . . . . . . . . . . . . . . [Arizona06_2010_05_29 with 158E],
. . . . . . . . syn403L [S7],
. . . . . . . . 405R [S7],
. . . . . . . . 407M [S7],
. . . . . . . . syn413K [S7],
. . . . . . . . syn419L [S7],
. . . . . . . . syn428L [S7],
. . . . . . . . syn443S [S7],
. . . . . . . . syn495E [MI09_2007_H1N2],
. . . . . . . . 508R,
. . . . . . . . syn515Q)
230I (ATa)
. . . . Fukuoka_C34_2010_04_09 (
. . . . . . . . syn#12K,
. . . . . . . . 22I,
. . . . . . . . syn103E,
. . . . . . . . 115K,
. . . . . . . . 165N,
. . . . . . . . 230I (ATa),
. . . . . . . . 274S [Iowa14_2009_12_07
. . . . . . . . . . . . . . . . with 119M],
. . . . . . . . HA truncated after aa329),
. . . . Minnesota04_18M_2010_03_22 (
. . . . . . . . 34D,
. . . . . . . . 165N,
. . . . . . . . 189T,
. . . . . . . . syn213F,
. . . . . . . . 218V,
. . . . . . . . 230I (ATa),
. . . . . . . . syn305K,
. . . . . . . . 313I [Orenburg2974_2009_11_16_xL
. . . . . . . . . . . . . . . . with 225N],
. . . . . . . . syn346G),
. . . . RussiaBelgorod2_2010_03_15 (
. . . . . . . . syn13N [WiscD0459_2009_12_18_xL
. . . . . . . . . . . . . . . . . . with 189T, 324I & 499K,
. . . . . . . . . . . . . . LouisianaAF2435_2009_11_30
. . . . . . . . . . . . . . . . . . with syn338G],
. . . . . . . . 77N [tn, swine, S5]
. . . . . . . . . . . [JapanOsaka60_2010_07_02
. . . . . . . . . . . . . . . . with syn276H,
. . . . . . . . . . . Maryland04_2010_02_08
. . . . . . . . . . . . . . . . with syn276H,
. . . . . . . . . . . ShandongShizhongSWL24_2010_01_24,
. . . . . . . . . . . NY7020_2009_12_14
. . . . . . . . . . . . . . . . with syn166K & 189T,
. . . . . . . . . . . CalifVRDL115_2009_12_04
. . . . . . . . . . . . . . . . with syn276H,
. . . . . . . . . . . JapanAF2267_2009_11_09
. . . . . . . . . . . . . . . . with 286E,
. . . . . . . . . . . NevadaAF2490_2009_11_02
. . . . . . . . . . . . . . . . with 100N & syn270I,
. . . . . . . . . . . AlaskaAF2093_2009_11_02
. . . . . . . . . . . . . . . . with 286E,
. . . . . . . . . . . Russia74_2009_11_01_xL,
. . . . . . . . . . . ThailandTHB0441_2009_07_28,
. . . . . . . . . . . Lisboa40_2009_06_23,
. . . . . . . . . . . AnhuiSWL1_2009_06_18
. . . . . . . . . . . . . . . . with 275I,
. . . . . . . . . . . Lithuania1942_2009,
. . . . . . . . . . . swKoreaSCJ10_2009_12,
. . . . . . . . . . . swKoreaSCJ09_2009_12]
. . . . . . . . 158E mix,
. . . . . . . . 225G (Gga) stepwise from 225E,
. . . . . . . . 230I (ATa),
. . . . . . . . 238D [H2N3, H7N3, H7N7, tn, swine],
. . . . . . . . . . . . [PNG_Goroka17_2010_04_14,
. . . . . . . . . . . . AthensINS398_2010_01_24,
. . . . . . . . . . . . AthensINS339_2009_12_30,
. . . . . . . . . . . . Kaliningrad01_11M_2009_11_02
. . . . . . . . . . . . . . . . . . with 225E & 226R,
. . . . . . . . . . . . KaliningradCRIE_DA_2009_09_26,
. . . . . . . . . . . . KaliningradCRIE_KG_2009_09_25,
. . . . . . . . . . . . KaliningradCRIE_SHD_2009_09_25,
. . . . . . . . . . . . KaliningradCRIE_MA_2009_09_25,
. . . . . . . . . . . . KaliningradCRIE_ZD_2009_09_25],
. . . . . . . . syn245F [H2N3, H5N1, H7N7, H10N7, H11]
. . . . . . . . . . . . . . [SingON2416_2009_12_15
. . . . . . . . . . . . . . . . . . . . . with syn166K & 300P,
. . . . . . . . . . . . . . . EgyptAswan2288_2009_11_02
. . . . . . . . . . . . . . . . . . . . . with 189T],
. . . . . . . . 300S [H7N3, H7N7 (tCt)],
. . . . . . . . 305N (AAc) [ThaiChiangRai226_2M_2010_03_04
. . . . . . . . . . . . . . . . . . . . . . . with 270T,
. . . . . . . . . . . . . . . . . . Brunei5_52M_2010,
. . . . . . . . . . . . . . . . . . SouthCarolinaAF2562_2009_11_15 (AAt),
. . . . . . . . . . . . . . . . . . DenmarkAalborgINS133_2009_12_02 (AAt)],
. . . . . . . . syn343G [H3N8, H5N1, H6N1, H7N3, H7N7, H10N7, H11, 1918],
. . . . . . . . . . . . . . . [Thuringen189_2009_11_24_xL,
. . . . . . . . . . . . . . . Thuringen227_11_17_xL]),
. . . . Ukraine123_2010_02_14_xL (
. . . . . . . . syn0T [BangkokINS427_27M_2010_03_04
. . . . . . . . . . . . . . . . . with syn209Y, syn232Y, syn490P & syn506V,
. . . . . . . . . . . . . DenmarkHvidovreINS290_20F_2009_11_27
. . . . . . . . . . . . . . . . . with 35I, syn490P, 502K & 526T,
. . . . . . . . . . . . . LaReunion3479_2009
. . . . . . . . . . . . . . . . . with syn97D, syn139C & 225E]
. . . . . . . . 186P,
. . . . . . . . 208K,
. . . . . . . . 230I (ATa),
. . . . . . . . syn238E [Ukraine122_2010_01_15_xL
. . . . . . . . . . . . . . . . . . . with 186P, 252M, 324I, syn413K,
. . . . . . . . . . . . . . . . . . . . . . syn431L & syn484N,
. . . . . . . . . . . . . . . WiscD2424_2009_12_15
. . . . . . . . . . . . . . . . . . . with 225E, 300S & 463T,
. . . . . . . . . . . . . . . Netherlands2629_2009_12_04_xL
. . . . . . . . . . . . . . . . . . . with 225N, syn233Y, 324I, syn413K & 507E,
. . . . . . . . . . . . . . . RussiaAnadyrIIV177_2009_12_04_xL_f
. . . . . . . . . . . . . . . . . . . with 225G, 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . JapanNagasakiHA64_2009_11_27
. . . . . . . . . . . . . . . . . . . with syn35L, syn92T, 200T, 324I & 513V,
. . . . . . . . . . . . . . . Arkhangelsk_GNY_2009_11_25_xL_f
. . . . . . . . . . . . . . . . . . . with 324I, syn413K, 437N & syn484N,
. . . . . . . . . . . . . . . MoscowCHSN_2009_11_23_xL_f
. . . . . . . . . . . . . . . . . . . with 225G, 324I & syn413K & syn484N,
. . . . . . . . . . . . . . . DenmarkHvidovreINS141_2009_11_20_xL
. . . . . . . . . . . . . . . . . . . with syn23L, 324I, syn413K, syn484N & syn549R,
. . . . . . . . . . . . . . . Lipetsk_BVV_2009_11_10_xL_f
. . . . . . . . . . . . . . . . . . . with 225G, 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . Orel_KAI1_2009_11_05
. . . . . . . . . . . . . . . . . . . with 280A, 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . Russia4_2009_11_01_xL
. . . . . . . . . . . . . . . . . . . with 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . Russia14_2009_11_01_xL
. . . . . . . . . . . . . . . . . . . with 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . Russia191_2009_11_01_xL
. . . . . . . . . . . . . . . . . . . with syn103E, 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . Belarus220_2009_11,
. . . . . . . . . . . . . . . Belarus360_2009_11,
. . . . . . . . . . . . . . . EgyptN14648_2009_11
. . . . . . . . . . . . . . . . . . . with 225N, 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . Belarus131_2009_10,
. . . . . . . . . . . . . . . GuamNHRC0032_2009_09_14
. . . . . . . . . . . . . . . . . . . with 89G,
. . . . . . . . . . . . . . . Managua5295_02_2009_07_23,
. . . . . . . . . . . . . . . ThailandTHA0364_2009_07_22
. . . . . . . . . . . . . . . . . . . with #12E, 37N, 296H & syn348V,
. . . . . . . . . . . . . . . Missouri02_2009_05_01
. . . . . . . . . . . . . . . . . . . with syn215P, syn377E, syn456L & syn523V,
. . . . . . . . . . . . . . . Bayern62S3_2009_04_29_VxX
. . . . . . . . . . . . . . . . . . . with 158E mix & syn238E,
. . . . . . . . . . . . . . . GermanyRegensburg01_2009_04_27
. . . . . . . . . . . . . . . . . . . with syn456L,
. . . . . . . . . . . . . . . GermanyRegensburgD6_2009
. . . . . . . . . . . . . . . . . . . with syn456L],
. . . . . . . . 252M [Fixed in 2010 Illinois swine with 119M,
. . . . . . . . . . . . . Ukraine122_2010_01_15_xL
. . . . . . . . . . . . . . . . . . . with 186P, 252M, 324I, syn413K,
. . . . . . . . . . . . . . . . . . . . . . syn431L & syn484N,
. . . . . . . . . . . . . Seoul2883_2009_12_02,
. . . . . . . . . . . . . Seoul1829_2009_11_26,
. . . . . . . . . . . . . LagosWRAIR1982N_2009_11_23,
. . . . . . . . . . . . . . . . . . . with syn164L, syn244T [u], syn291T,
. . . . . . . . . . . . . LagosWRAIR1984N_2009_11_18,
. . . . . . . . . . . . . . . . . . . with syn164L, syn244T [u], syn291T,
. . . . . . . . . . . . . LagosWRAIR1984T_2009_11_18
. . . . . . . . . . . . . . . . . . . with syn164L, syn244T [u], syn291T,
. . . . . . . . . . . . . UkrChernihiv857_2009_11_14_xL_f
. . . . . . . . . . . . . . . . . . . with 186P, 225G, syn238E, 324I,
. . . . . . . . . . . . . . . . . . . . . . . syn413K, syn431L, syn484N,
. . . . . . . . . . . . . Texas45132202_2009_09_13,
. . . . . . . . . . . . . Ancona86_2009_08_31
. . . . . . . . . . . . . . . . . . . with 225E & 300S,
. . . . . . . . . . . . . TurkeyAnkara17_2009_08,
. . . . . . . . . . . . . BZ_SaoPaulo43812_2009_07_03_f],
. . . . . . . . 289V [HK1881_2010_04_18,
. . . . . . . . . . . . . EstoniaTallinnINS431_2010_02_05,
. . . . . . . . . . . . . Luxembourg184_2010_01_25,
. . . . . . . . . . . . . Saarland21_2009_12_11,
. . . . . . . . . . . . . IndiaPune21115_2009_12 with 233H,
. . . . . . . . . . . . . Hiroshima457 _2009_11_02,
. . . . . . . . . . . . . JiangsuNanjinggulouSWL11146_2009_09_17,
. . . . . . . . . . . . . Kobe91993_2009_08_18,
. . . . . . . . . . . . . Kobe91992_2009_08_17,
. . . . . . . . . . . . . UK_Glascow_SC10_2009_06 with 225G,
. . . . . . . . . . . . . UK_Glascow_SC19_2009_06,
. . . . . . . . . . . . . UK_Glascow_SC20_2009_06],
. . . . . . . . 324I,
. . . . . . . . syn413K,
. . . . . . . . syn431L [Emergent],
. . . . . . . . . . . . . . . [OZ_Grafton2_20F_2010_08_05
. . . . . . . . . . . . . . . . . . . . . . . with 128D, syn173G & syn273T,
. . . . . . . . . . . . . . . OZ_Perth504_5M_2010_07_07
. . . . . . . . . . . . . . . . . . . . . . . with 128D, syn173G & syn273T,
. . . . . . . . . . . . . . . swIllinois03037_2010_06_24
. . . . . . . . . . . . . . . . . . . . . . . with 77G,
. . . . . . . . . . . . . . . swIowa03032_2010_06_04
. . . . . . . . . . . . . . . . . . . . . . . with 77G,
. . . . . . . . . . . . . . . PNG_Goroka16_1F__2010_04_07
. . . . . . . . . . . . . . . . . . . . . . . with 77G & 252L,
. . . . . . . . . . . . . . . PNG_Goroka16E3_1F_2010_04_07
. . . . . . . . . . . . . . . . . . . . . . . with 77G, 186P, 204M, syn205G & 252L,
. . . . . . . . . . . . . . . PNG_Goroka15_2010_02_24
. . . . . . . . . . . . . . . . . . . . . . . with 77G & 252L,
. . . . . . . . . . . . . . . Ukraine122_2010_01_15_xL,
. . . . . . . . . . . . . . . HainanDinganSWL123_2010_01_08,
. . . . . . . . . . . . . . . swOregon10_004060_2009_12_31
. . . . . . . . . . . . . . . . . . . . . . . with syn189A,
. . . . . . . . . . . . . . . AthensINS359_2009_12_26
. . . . . . . . . . . . . . . . . . . . . . . with syn189A,
. . . . . . . . . . . . . . . UkrChernihiv857_2009_11_14_xL_f,
. . . . . . . . . . . . . . . SpainCatS1632_2009_10_28,
. . . . . . . . . . . . . . . swHongKong2314_2009_10_22,
. . . . . . . . . . . . . . . ItalyAncona05_2009_07-12
. . . . . . . . . . . . . . . . . . . . . . . with 225E,
. . . . . . . . . . . . . . . England673_2009_07
. . . . . . . . . . . . . . . . . . . . . . . with 225E],
. . . . . . . . syn484N [H3N8, H4, H5, H6, H7N7, H9N2, H11]),
. . . . . . . . . . . . . . . [NY04_2010_02_25
. . . . . . . . . . . . . . . . . . . with 3T, 50E, syn53L, 100N, syn232Y,
. . . . . . . . . . . . . . . . . . . . . . . syn270I, 377K, 437N,
. . . . . . . . . . . . . . . RussiaStPeter204E2E2_2010_02_08_VxX,
. . . . . . . . . . . . . . . RussiaStPeter204E2E1_2010_02_08_VxX,
. . . . . . . . . . . . . . . RussiaStPeter204E2_2010_02_08_VxX,
. . . . . . . . . . . . . . . Saratov07E2E1_2010_02_01_VxX,
. . . . . . . . . . . . . . . Saratov07E2_2010_02_01_VxX,
. . . . . . . . . . . . . . . Ukraine122_2010_01_15_xL
. . . . . . . . . . . . . . . . . . . with 186P, 252M, 324I, syn413K,
. . . . . . . . . . . . . . . . . . . . . . syn431L & syn484N,
. . . . . . . . . . . . . . . RussiaAnadyrIIV177_2009_12_04_xL_f
. . . . . . . . . . . . . . . . . . . with 225G, syn238E, 324I & syn413K,
. . . . . . . . . . . . . . . Arkhangelsk_GNY_2009_11_25_xL_f
. . . . . . . . . . . . . . . . . . . with 324I, syn413K, 437N & syn484N,
. . . . . . . . . . . . . . . MoscowCHSN_2009_11_23_xL_f
. . . . . . . . . . . . . . . . . . . with 225G, 324I & syn413K,
. . . . . . . . . . . . . . . DenmarkHvidovreINS141_2009_11_20_xL
. . . . . . . . . . . . . . . . . . . with syn23L, 324I, syn413K, syn484N & syn549R,
. . . . . . . . . . . . . . . RussiaStPeterVMN_2009_11_19_f,
. . . . . . . . . . . . . . . UkrChernihiv857_2009_11_14_xL_f
. . . . . . . . . . . . . . . . . . . with 186P, 225G, syn238E, 252M,
. . . . . . . . . . . . . . . . . . . . . . . 324I, syn413K, syn431L,
. . . . . . . . . . . . . . . UkrChernihiv855L_2009_11_11_xL_f,
. . . . . . . . . . . . . . . Lipetsk_BVV_2009_11_10_xL_f
. . . . . . . . . . . . . . . . . . . with 225G, 324I, syn413K & syn484N,
. . . . . . . . . . . . . . . OrelKAI1_2009_11_05,
. . . . . . . . . . . . . . . Russia4_2009_11_01_xL,
. . . . . . . . . . . . . . . Russia14_2009_11_01_xL,
. . . . . . . . . . . . . . . Russia191_2009_11_01_xL,
. . . . . . . . . . . . . . . EgyptN14648_2009_11
. . . . . . . . . . . . . . . . . . . with 225N, syn238E, 324I & syn413K,
. . . . . . . . . . . . . . . RussiaStPeterRII96_2009_10_29
. . . . . . . . . . . . . . . . . . . with 187N,
. . . . . . . . . . . . . . . NizhniNovgorodMEV_2009_07_30,
. . . . . . . . . . . . . . . ItalyAncona15_2009_07_17,
. . . . . . . . . . . . . . . Fixed in Thai Swine including
. . . . . . . . . . . . . . . . . . . swThaiCU_RA75_2010_01 with 188T],
. . . . . . . . syn500R [Unique to GenBank/GISAID]),
. . . . Wisc0337_09M_2009_12_15 (
. . . . . . . . 230I (ATa),
. . . . . . . . 275A,
. . . . . . . . 377K [H9N2]),
. . . . TexasAF2579_18M_2009_10_04 (
. . . . . . . . syn20D,
. . . . . . . . 225E,
. . . . . . . . 230I (ATa),
. . . . . . . . syn246E,
. . . . . . . . 264D,
. . . . . . . . 300S,
. . . . . . . . HA truncated after aa386),
. . . . H1N1 (1943, 46, 51),
. . . . H5N1 Gharbiyah 80% CFR,
. . . . H5N1 VietJP4207_2005,
. . . . H5N1 Egypt ckEgypt0883NLQP_2008,
. . . . . . . . . . . . . . ckEgypt1892N3_HK49_2007 mix,
. . . . . . . . . . . . . . ckEgypt07175NLQP_2007_05_24,
. . . . . . . . . . . . . . dkEgypt5169_1_2007,
. . . . H3N8 including eqIndiaAhmedabad1_2009_04_26
230I (ATt)
. . . . Guangdong2282 (
. . . . . . . . 131P, 202A, 230I (ATt), 244I, 275A),
. . . . LiaoningShuncheng1148 (
. . . . . . . . 131P, 202A, 230I (ATt), 244I, 275A),
. . . . H5N1, H6N1,
. . . . H7N7,
. . . . H9N2
230V (gTG)
. . . . TexasJMS369_2009
231N synonymous (AAt)
. . . . NY3230_2010_01_25 (100N, 159K),
. . . . CalifVRDL36_2009_09_24 mix (syn194L, 273K, 377K [H9N2]),
. . . . Lisboa104_2009_12_22, GuamNHRC0002_2009_07_23,
. . . . SingGP4309_2009_11_12 (syn21T, syn343G, 377K [H9N2])
231D (gAC)
. . . . Ankara05, OSAKA2143,
. . . . GuangxiQinnan1187 (syn175E, syn541C),
. . . . H6N1,
. . . . H9N2 2008
231K (AAa)
. . . . Wisc0853, Wisc1915, Wisc2337,
. . . . WiscD0740 (
. . . . . . . . 22I, 176I, 188I, 277N, syn413K [H9N2]),
. . . . WiscS1416_2009_10_26_xL (
. . . . . . . . 22I, syn157K, 176I, 188I, 231K, 277N,
. . . . . . . . syn366A [tn], syn413K [H9N2]),
. . . . GuangdongSB1_2009_05_28feces
231S (AgC)
. . . . Slovenia5711,
. . . . NY6346_2009_11_18,
. . . . HNHualong511_2009 (22I, 131P),
. . . . swNC19646_2010_04_20 (
. . . . . . . . 122N,
. . . . . . . . 158E [H3N8, H5N1], 
. . . . . . . . 186P,
. . . . . . . . 231S,
. . . . . . . . 253I,
. . . . . . . . syn346G,
. . . . . . . . syn413K [H9N2])
. . . . NJ11_1976, swH1N2 NC 2001
232Y synonymous (TAc)
. . . . IndiaSrinagar4_2010_01_08 (
. . . . . . . . 22I,
. . . . . . . . syn232Y),
. . . . EasternIndia2499_2009_09 (
. . . . . . . . HA truncated before aa#2,
. . . . . . . . syn86S,
. . . . . . . . syn232Y,
. . . . . . . . HA truncated after aa330),
. . . . EasternIndia2503_2009_09 (
. . . . . . . . HA truncated before aa#2,
. . . . . . . . 107V,
. . . . . . . . syn183H,
. . . . . . . . syn232Y,
. . . . . . . . HA truncated after aa330),
. . . . NY7216_2009_12_21 (
. . . . . . . . 8V [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . .  IndiaJalna9436_2009_08_30 with 226R,
. . . . . . . . . .  Utah32_2009_10_14],
. . . . . . . . syn53L,
. . . . . . . . 148F,
. . . . . . . . 225G,
. . . . . . . . syn232Y,
. . . . . . . . 501K),
. . . . Utah32_2009_10_14 (
. . . . . . . . syn1A [StPetersburg5_2009_07_17,
. . . . . . . . . . . . . . RussiaStPeterRII5_2009_08_13],
. . . . . . . . 8V [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . .  IndiaJalna9436_2009_08_30 with 226R,
. . . . . . . . . .  NY7216_2009_12_21 with 225G],
. . . . . . . . syn232Y,
. . . . . . . . syn361G [1918, WSN33, tn],
. . . . . . . . . . . [Latvia12_649_2009_12_09,
. . . . . . . . . . . NY6943_2009_12_07_xL,
. . . . . . . . . . . Stockholm107_2009_11_24,
. . . . . . . . . . . Latvia11_1133_2009_11_16,
. . . . . . . . . . . Latvia11_1133M_2009_11_16,
. . . . . . . . . . . Latvia11_575_2009_11_11]),
. . . . Texas45122722_2009_09_12 (
. . . . . . . . 114L mix, syn232Y, 324I),
. . . . TexasJMS386_2009_12_06_xL (
. . . . . . . . 22I, syn157K, 176I,
. . . . . . . . syn232Y, syn413K [H9N2], syn437T),
. . . . Florida30_2009_12_06 (
. . . . . . . . syn42G, 50E, 100N, syn232Y, syn270I, 377K),
. . . . PuertoRico51_2009_12_06 (
. . . . . . . . 50E, 100N, syn232Y, syn270I, syn368L, 377K),
. . . . Grenada9302_2009_10_23_xL (
. . . . . . . . 22I, syn33V, syn157K, 176I, syn184H, syn212K,
. . . . . . . . syn232Y, syn413K [H9N2], syn512R),
. . . . Martinique15_2009_06_20 (
. . . . . . . . 208K, syn232Y, syn308K, 513V),
. . . . Munich246_2009_11_16_xL (syn232Y, syn413K [H9N2]),
. . . . Munich247_2009_11_25_xL (syn232Y, 316S, syn413K [H9N2]),
. . . . S9, S7, M7, Sask,
. . . . H5N1, H6N1,
. . . . H9N2
232H (cAT)
. . . . ThaiSN_0112_2_2010_10 (
. . . . . . . . HA truncated before aa103,
. . . . . . . . 137T,
. . . . . . . . 186P,
. . . . . . . . 232H,
. . . . . . . . HA truncated after aa239),
. . . . CubaHabana7374_2010_01 (
. . . . . . . . HA truncated before aa05,
. . . . . . . . 28P,
. . . . . . . . syn32S,
. . . . . . . . 33G,
. . . . . . . . 165N,
. . . . . . . . 232H,
. . . . . . . . 275I,
. . . . . . . . syn287G,
. . . . . . . . syn305K,
. . . . . . . . syn346G,
. . . . . . . . 421M,
. . . . . . . . 432W,
. . . . . . . . 444Y,
. . . . . . . . HA truncated after aa535)
233Y synonymous (TAt)
. . . . Bonn279_2009_11_20_xL (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn233Y,
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . 377K [H9N2],
. . . . . . . . . . . . . . . syn413K [H9N2]),
. . . . Rome640_2009_11_26 (
. . . . . . . . . . . . . . . syn233Y,
. . . . . . . . . . . . . . . syn237V,
. . . . . . . . . . . . . . . truncated HA with no NA),
. . . . Hiroshima645_2009_12_12 (
. . . . . . . . . . . . . . . syn233Y,
. . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . syn426A [H2, H4, H5, H6, H7N7, H9N2],
. . . . . . . . . . . . . . . . . . . . . . [Ivanovo_RNA_2009_11_24_xL_f with 225G, 225N,
. . . . . . . . . . . . . . . . . . . . . Tambov_FOS_2009_12_01_xL],
. . . . . . . . . . . . . . . with no NA),
. . . . Athens_85_2009_12_13_xL (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn233Y,
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . 377K [H9N2],
. . . . . . . . . . . . . . . syn413K [H9N2]),
. . . . Athens270_2009_12_15_xL (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn233Y [H9N2],
. . . . . . . . . . . . . . . 269V,
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . 377K [H9N2],
. . . . . . . . . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . . . . . . . . syn428L [H5N1]),
. . . . Netherlands2464b_2009_11_15_xL (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn233Y,
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . 377K [H9N2],
. . . . . . . . . . . . . . . syn413K [H9N2]),
. . . . Netherlands2629_2009_12_04_xL (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . 225N,
. . . . . . . . . . . . . . . syn233Y,
. . . . . . . . . . . . . . . syn238E,
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . 377K [H9N2],
. . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . 507E),
. . . . Thessaloniki788_2010_02_17 (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn171D [M7, H3N8, H9N2],
. . . . . . . . . . . . . . . 194I [H5N1],
. . . . . . . . . . . . . . . syn233Y [H9N2],
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . 377K [H9N2]
. . . . . . . . . . . . . . . truncated HA with NA syn407V),
. . . . Thessaloniki791_2010_02_17 mix (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . syn171D [M7, H3N8, H9N2],
. . . . . . . . . . . . . . . 186P,
. . . . . . . . . . . . . . . 225G,
. . . . . . . . . . . . . . . syn233Y [H9N2],
. . . . . . . . . . . . . . . 324I,
. . . . . . . . . . . . . . . 377K [H9N2],
. . . . . . . . . . . . . . . truncated HA with NA syn407V),
. . . . H6N1,
. . . . H9N2 2008
233H (cAC)
. . . . NC Duke TmX cluster (5, mix, 225G, 225N),
. . . . Finland2_2010_01_12 (
. . . . . . . . syn177L,
. . . . . . . . 222R,
. . . . . . . . 233H,
. . . . . . . . syn296Q,
. . . . . . . . 324I,
. . . . . . . . syn413K),
. . . . NY2372_2010_01_20 (
. . . . . . . . 22L,
. . . . . . . . syn215P,
. . . . . . . . 233H,
. . . . . . . . 273A,
. . . . . . . . syn283Q [H9N2],
. . . . . . . . 382I),
. . . . NY6663_2009_11_23 (35I [H5N1]),
. . . . BethesdaSP506_2009_06_16 (syn134G [H5N1], syn304G [H5N1]),
. . . . BethesdaSP508_2009_06_18 (syn304G [H5N1]),
. . . . Arizona17_2009_10_15 (
. . . . . . . . 16P,
. . . . . . . . syn33V,
. . . . . . . . 158E mix,
. . . . . . . . 233H,
. . . . . . . . 377K [H9N2]),
. . . . Rome632_2009_11_23 (syn136T, syn144A, syn181G [H9N2]),
. . . . NZ_Waikato2_2010_01_04 (
. . . . . . . . 22L,
. . . . . . . . syn55L,
. . . . . . . . 233H,
. . . . . . . . syn283Q mix [H9N2],
. . . . . . . . 382I),
. . . . Australia6_2009_07_18 (
. . . . . . . . 89G [H7N7],
. . . . . . . . syn159N [H3N8, H9N2],
. . . . . . . . 233H,
. . . . . . . . syn297N [H5N1],
. . . . . . . . syn406R [1918, WSN33, S9, S7, M7]),
. . . . Ankara29_2009_11_18 (syn21T, syn205G [H6, H7N7], 494K)
. . . . TurkeyTR19_2009 (syn205G [H6, H7N7]),
. . . . Giannitsa2059_2009_11_05 (syn21T, syn205G [H6, H7N7]),
. . . . IndiaPune21115_2009_12 (
. . . . . . . . syn147F [H3N8 Avian, H4, H5, H6, H11],
. . . . . . . . . . . . . . [Yaroslavl_KMP_2009_08_25,
. . . . . . . . . . . . . .  IndiaJalna9436_2009_08_30 with 226R,
. . . . . . . . . . . . . .  Texas44301765_2009_08_30,
. . . . . . . . . . . . . .  CalifVRDL99_2009_11_05,
. . . . . . . . . . . . . .  Athens943_2009_06_12],
. . . . . . . . syn163K,
. . . . . . . . 271T,
. . . . . . . . 289V [Ukraine123_2010_02_14_xL with 230I,
. . . . . . . . . . UK_Glascow_SC10_2009_06 with 225G, et al],
. . . . . . . . 377K [H9N2],
. . . . . . . . syn383N),
. . . . TJNankai1669_2010 (131P, 202A),
. . . . swHK_189_2010_01_07 (131P, syn315L)
234W (TGG)
. . . . PF11 wt
. . . . H5N1 wt
234G (gGG)
. . . . Darwin1_2010_02_16 mix (104I, 234G, 276Q, 377K [H9N2],
. . . . . . . . . . . . . . . . . . . . . 488A, syn508L, 514H)
235T synonymous (ACg)
. . . . MississippiAF2474_2010_03_10 (
. . . . . . . . syn3A,
. . . . . . . . syn193S [H3N8, H6N1]
. . . . . . . . syn235T [H3N8],
. . . . . . . . syn256Y [H6N1],
. . . . . . . . syn283Q [H5, H6, H9N2],
. . . . . . . . 311R,
. . . . . . . . syn338G [H3N8, H4, H5, H6, sw],
. . . . . . . . 377K [H9N2]
. . . . . . . . HA truncated after aa386),
. . . . Saratov07E2_24X_2010_02_01_xL_VxX (
. . . . . . . . 158E mix,
. . . . . . . . 225G,
. . . . . . . . syn235T [H3N8],
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn419L (CTt),
. . . . . . . . syn484N),
. . . . Saratov07E2E1_24X_2010_02_01_ xL_VxX (
. . . . . . . . 47I mix,
. . . . . . . . 157E,
. . . . . . . . 158E mix,
. . . . . . . . 225G,
. . . . . . . . syn235T [H3N8],
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . syn413K [H2, H5N1, H9N2],
. . . . . . . . syn419L (CTt),
. . . . . . . . syn484N),
. . . . DenmarkOdenseINS307_2009_11_23 (
. . . . . . . . 124R,
. . . . . . . . 150S,
. . . . . . . . syn181G [H9N2],
. . . . . . . . syn235T [H3N8],
. . . . . . . . 373H)
235T synonymous (ACt)
. . . . swIowa44837_1_2009_11_08_xL
. . . . . . . . with 225N, 230I (ATc), syn232Y, 238D
. . . . . . . . and 90+ additional revisions
235T synonymous (ACc, ACg, ACt)
. . . . SingON313_2009_06_19 mix
. . . . H3N8 ACt
. . . . . . . . eqIndiaAhmedabad1_2009_04_26,
. . . . . . . . tealKorgalzhyn1797_2006
. . . . H3N8 ACg
. . . . . . . . dkSaitama2_2009_10,
. . . . . . . . dkSaitama3_2009_10,
. . . . . . . . dkSaitama4_2009_10
. . . . H3N8 ACc extensive including
. . . . . . . . eqIndiaKatraJammu7_2008_06,
. . . . . . . . eqChinaHuabei1_2007_12_03,
. . . . . . . . eqItalyBari_2005,
. . . . . . . . eqMysore1_2008_12_10,
. . . . . . . . eqYokohamaaq19_2009,
. . . . . . . . eqEgypt6066NAMRU3VSVRI_2008_06,
. . . . . . . . eqHokkaidoI828_2008
235A CatNS7632, CalifVRDL55
235I (AtA)
. . . . Wisc2489 (35I [H5N1], syn380N [H6N2]),
. . . . Hangzhou07 (74F [H5N1], 76S, syn294P),
. . . . H3N8 mallAlberta431_2006,
. . . . H6N2 mallMN232_1998
236L synonymous (CTg)
. . . . Wisc0099,
. . . . H9N2 (gTg)
236L synonymous (tTA)
. . . . NY7480_2010_03_01 (
. . . . . . . . . . . . . . . . 51S [H6N1],
. . . . . . . . . . . . . . . . 182V [1918, tn, H3N8, H4, H6N1, H7N3, H11],
. . . . . . . . . . . . . . . . syn236L [1918],
. . . . . . . . . . . . . . . . 253A [S5, 1918, WSN33, H2, H3N8, H6N1, H7N7],
. . . . . . . . . . . . . . . . syn390N [H2, H3N8, H5, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . . syn404E [H2, H3N8, H4, H5, H6, H7N7, H9N2, H11]),
. . . . 1918, WSN33 (tTg)
236I (aTA)
. . . . NY7420_2010_01_02 (
. . . . . . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . . . . . syn80S [H5N1, H6N1, H7N3, H9N2, H11],
. . . . . . . . . . . . . . . . syn159N [H3N8, H9N2],
. . . . . . . . . . . . . . . . syn184H [H2N3, H3N8, H5, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . . syn441H [H2N3, H5, H6, H9N2, H11]),
. . . . NY7425_2009_12_20 (
. . . . . . . . . . . . . . . . 35I [H5N1],
. . . . . . . . . . . . . . . . syn113S [1918, H7N3],
. . . . . . . . . . . . . . . . syn159N [H3N8, H9N2],
. . . . . . . . . . . . . . . . syn184H [H2N3, H3N8, H5, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . . syn413K [H9N2],
. . . . . . . . . . . . . . . . syn441H [H2N3, H5, H6, H9N2, H11]),
. . . . NordrheinWestfalen113, Bayern107,
. . . . Avian H1N1 wfgooseGermanyNIR482_2009,
. . . . H6N1 tealAustralia1_1979, H11,
. . . . H3N8,
. . . . H7N7 1902, 1927, 2002, 2003,
. . . . H9N2 ckAfghanistan3297vir09AFGHeart6_2009,
. . . . . . . . ckAfghanistan3298vir09AFGHeart7_2009,
. . . . . . . . AnhuiJ22_2008 plus 8
236V
. . . . Eng93120020, ENG645,
. . . . H9N2, H6N1
237V synonymous (GTc)
. . . . Rome640_2009_11_26 (syn233Y [H9N2])
237V synonymous (GTg)
. . . . NY_150_2009_12_07 (
. . . . . . . . syn44L,
. . . . . . . . syn65L [H3N8],
. . . . . . . . syn133K,
. . . . . . . . syn204V [H9N2],
. . . . . . . . syn237V [H3N8, H4], 
. . . . . . . . 377K [H9N2]),
. . . . Pennsylvania31 (syn204V, syn237V, et al),
. . . . KuwaitN13111_2009_09_23,
. . . . AfghanN10767_2009_09, AfghanN10974_2009_09,
. . . . M7 (cTg),
. . . . H6N1 (cTg), H7N7 (cTg, tTg), H9N2 (tTg),
. . . . Avian H4 (GTg),
. . . . H3N8 (GTg)
237A (GcA)
. . . . BeijingSE3182_2009_11 (131P, 195H, syn303I, syn337A)
237E (GaA)
. . . . ChinaJinhua01_2009_11_25 (
. . . . . . . . syn21T,
. . . . . . . . syn175E,
. . . . . . . . 237E,
. . . . . . . . syn376D,
. . . . . . . . syn379T,
. . . . . . . . syn426A,
. . . . . . . . syn541C)
237I (aTA)
. . . . Delaware02_2010_02_11 (
. . . . . . . . syn31H,
. . . . . . . . 119M [H6N1, H7N7],
. . . . . . . . 237I,
. . . . . . . . syn275V,
. . . . . . . . syn352Y [H3N2, H3N8, H5N1, H6N2, H6N4, H10N7],
. . . . . . . . . . . . . . . [Fixed in non-PF11 Emergent swine lineages,
. . . . . . . . . . . . . . . SpainTerrassaINS175_2009_12_23 with 100N, syn270I,
. . . . . . . . . . . . . . . AthensINS164_2009_12_20 with syn181G, 373H],
. . . . . . . . syn374A,
. . . . . . . . 476D,
. . . . . . . . syn530V),
. . . . Calif_SD69,
. . . . England (2),
. . . . Russia (4), Madrid_185 (447K), Asia (4),
. . . . China22811_2009_12 (syn10Y, 12S, syn62G, 70R, 131P, 166E,
. . . . . . . . . . . . . . . . syn214K, 237I, 241E, 271P, syn285P, syn377E
. . . . . . . . . . . . . . . . syn439D, 443P, 461R)
237L (tTA)
. . . . Wisc0936 (214Q),
. . . . 1918, H1N1 (1943, 46, 51),
. . . . tn, H5N1, H6N1,
. . . . H9N2
238E synonymous (GAa) Extensive
. . . . Moldova226_2010_01_11,
. . . . NagasakiHA64_2009_11_27 (
. . . . . . . . syn35L,
. . . . . . . . syn92T,
. . . . . . . . syn136T,
. . . . . . . . 200T,
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . 513V),
. . . . WiscD2424_2009_12_15 (
. . . . . . . . syn119I,
. . . . . . . . syn121P,
. . . . . . . . syn132N,
. . . . . . . . 225E,
. . . . . . . . syn238E,
. . . . . . . . 300S,
. . . . . . . . 463T),
. . . . FL25, MO02,
. . . . SC01_2010, MN01_2010,
. . . . Netherlands2629_2009_12_04_xL (
. . . . . . . . . . . . . . . syn58C [H2N3, H3N8, H4, H6, H7N3, H7N7, H9N2, H11],
. . . . . . . . . . . . . . . 225N, syn233Y, syn238E, 324I,
. . . . . . . . . . . . . . . 377K [H9N2], syn413K [H9N2], 507E),
. . . . Ukraine (4), Belarus (3),
. . . . Russia (10) including 3 cross-linked and fatal:
. . . . Arkhangelsk_GNY_2009_xL_f (
. . . . . . . syn134G [H2, H3N8, H4, H5N1 (E/A/H), H6, H9N2, H11],
. . . . . . . syn177L [H3N8, H6, H7N7], syn238E [H2, H4],
. . . . . . . syn240G [H3N8, H6, H9N2, H11],
. . . . . . . 324I, syn413K [H9N2], 437N,
. . . . . . . syn484N [H3N8, H4, H5N1 (E/A/H), H6, H7N7, H9N2, H11]),
. . . . Lipetsk_BVV_2009_xL_f (
. . . . . . . syn177L [H3N8, H6, H7N7], 225G,
. . . . . . . syn238E [H2, H4], syn240G [H3N8, H6, H9N2, H11],
. . . . . . . 324I, syn413K [H9N2], syn542S [H2, H5, H9N2],
. . . . AnadyrIIV177_2009_12_04_xL_f  (
. . . . . . . . . . . 212T [H3N8], 225G, syn238E [H2, H4],
. . . . . . . . . . . 324I, syn413K [H9N2],
. . . . . . . . . . . syn484N [H3N8, H4, H5, H6, H7N7, H9N2, H11]),
. . . . EgyptN14648_2009_11, Germany (3),
. . . . ENGxfl00311_2009_05 (syn215P, syn377E, syn456L [H5N1], syn523V),
. . . . Latvia122498, ThaiTHA0364, ShanxiChengqu547,
. . . . Cyprus5800_2010,
. . . . DenmarkHvidovreINS141_2009_11_20_xL (
. . . . . . . . syn23L,
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . syn413K,
. . . . . . . . syn484N,
. . . . . . . . syn549R),
. . . . H1N1 Swine,
. . . . H2N3 Avian (GAa), H4 Avian (GAa), H5N1 (aAa), H6N1 (aAa),
. . . . H9N2 2008-2009 (aAa)
238D (GAc)
. . . . Victoria508_2010_07_24 (see 247A)
. . . . H2N3,
. . . . H7N3 extensive,
. . . . H7N7 ruddyDelaware893_2006
238D (GAt)
. . . . PNG_Goroka17_2010_04_14
. . . . Belgorod2_2010-03-15,
. . . . AthensINS398_2010-01-24,
. . . . AthensINS339_2009_12_30
. . . . Kaliningrad01_2009_11_02 (225E+226R),
. . . . KaliningradCRIE_DA_2009-09-26,
. . . . KaliningradCRIE_KG_2009-09-25,
. . . . KaliningradCRIE_MA_2009-09-25,
. . . . KaliningradCRIE_SHD_2009-09-25,
. . . . KaliningradCRIE_ZD_2009-09-25,
. . . . tn,
. . . . H2N3,
. . . . H7N3 extensive,
. . . . H7N7 15%
238G (GgG)
. . . . AthensINS161_2009_12_19 (
. . . . . . . . #8A,
. . . . . . . . 89G,
. . . . . . . . syn122K,
. . . . . . . . 152L,
. . . . . . . . syn159N,
. . . . . . . . 238G,
. . . . . . . . syn312S,
. . . . . . . . syn354Y mix),
. . . . AthensINS350_2009_12_20 (
. . . . . . . . #8A,
. . . . . . . . 89G,
. . . . . . . . syn122K,
. . . . . . . . 152L,
. . . . . . . . syn159N,
. . . . . . . . 238G,
. . . . . . . . syn312S)
238D (GAt) Kaliningrad01_2009_11_02 (225E+226R), tn
238K (aAG)
. . . . Wisc2485 (225E), DjiboutiN13142_2009_12_08, Spain (3),
. . . . Rome685_2009_11_12 (syn181G, 208K),
. . . . OrenburgIIV13_2010_03_02_xL_f (225G),
. . . . China,
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . H1N1 Iowa_1943,
. . . . H5N1 (aAA), H6N1 (aAA, aAG),
. . . . H3N8 (aAA, aAG),
. . . . H9N2 2008-2009 (aAA, aAG)
239P synonymous (CCt)
. . . . ENG621, NY6939,
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11]),
. . . . H1N1 Swine,
. . . . H7N7, H3N8
239P synonymous (CCa) Russia180, Australia60,
. . . . Ancona508PG (syn172K, syn181G, syn355H, 373H),
. . . . MS09, NV20, ME01_2010, tn,
. . . . H4, H6N1,
. . . . H3N8,
. . . . H9N2
239P synonymous (CCc)
. . . . HBSongzi1176_2010 (131P, 276E),
. . . . HBSongzi189_2010 (131P, 276E)
239L (CtG)
. . . . Iran15583_2009_11_21 with 16 HA + 3 NA polymorphisms:
. . . . . . . . . . . . . . . . . (syn21T, 80P, 149Q, 170H, syn210S [tn],
. . . . . . . . . . . . . . . . . . syn214K [H9N2], 226R, 227Q, 239L, syn254P [H5],  
. . . . . . . . . . . . . . . . . . 277N [H5, tn], 285T, 286T, syn290N,
. . . . . . . . . . . . . . . . . . syn361G [1918, WSN33, tn], 377K [H9N2])
240G synonymous (GGg)
. . . . DC_24,
. . . . Russia (4) including 2 cross-linked and fatal:
. . . . Arkhangelsk_GNY_2009_xL_f (
. . . . . . . syn134G [H2, H3N8, H4, H5N1 (E/A/H), H6, H9N2, H11],
. . . . . . . syn177L [H3N8, H6, H7N7], syn238E [H2, H4],
. . . . . . . syn240G [H3N8, H6, H9N2, H11],
. . . . . . . 324I, syn413K [H9N2], 437N,
. . . . . . . syn484N [H3N8, H4, H5N1 (E/A/H), H6, H7N7, H9N2, H11]),
. . . . Lipetsk_BVV_2009_xL_f (
. . . . . . . syn177L [H3N8, H6, H7N7], 225G,
. . . . . . . syn238E [H2, H4], syn240G [H3N8, H6, H9N2, H11],
. . . . . . . 324I, syn413K [H9N2], syn542S [H2, H5, H9N2],
. . . . S9, S7, M7, Sask,
. . . . Avian H11,
. . . . H6N1,
. . . . H3N8,
. . . . H9N2
240G synonymous (GGc) Wisc0636,
. . . . H9N2 (GGc)
240E (GaA) Brandenburg34,
. . . . Avian H11
241D synonymous (GAt)
. . . . CatS1943,
. . . . Colombia4117,
. . . . MexicoCity024_2009_04_30 (syn324V),
. . . . swIll (3), S7, M7, tn,
. . . . H5N1
241E (GAa) China22811_2009_12 (syn10Y, 12S, syn62G, 70R, 131P, 166E,
. . . . . . . . . . . . . . . . . . syn214K, 237I, 271P, syn285P, syn377E,
. . . . . . . . . . . . . . . . . . syn439D, 443P, 461R),
. . . .  H9N2 (CAa, CAg), H6N1 (GAa, GAg)
241G (GgC)
. . . . CalifVRDL124_2009_12_22 (
. . . . . . . . 141N [CalifVRDL1_2010_01_09],
. . . . . . . . 241G,
. . . . . . . . 377K),
. . . . NH17, ENG93040048
242K synonymous (AAg)
. . . . swOR4060_2009_12_31 (syn51A [H6N1, H11])
242E (gAA)
. . . . Rome676_2009_10_28 (syn190D),
. . . . H2N3 (gtt, gtc),
. . . . H3N8 (gtA, gtt, gtg),
. . . . H5N1 (gcA, gtA),
. . . . H11 (gcA)
243I (ATA)
. . . . PF11 wt
. . . . H5N1 wt
243M (ATg)
. . . . BeijingSE931_2009_08 (syn21N, 58R, syn175E, syn287G,
. . . . . . . . . . . . . . . . 347I, 451R, syn514Y, syn541C)
244T synonymous (ACt) CatS1935, CatS2120
244I ThaiCU_H9, Shiga1,
. . . . Guangdong2282 (131P, 202A, 230I, 275A),
. . . . LiaoningShuncheng1148 (131P, 202A, 230I, 275A),
. . . . Ancona02, Stockholm29,
. . . . Alabama03_2010,
. . . . H1N1 (1946, 51), S9, S7, M7, Sask
244K (AaA) Thessaloniki1955_2009_11_02 (285S)
245F synonymous (TTt)
. . . . EgyptAswan2288_2009_11_02 (
. . . . . . . . 189T,
. . . . . . . . syn245F,
. . . . . . . . 377K [H9N2]),
. . . . SingON2416_2009_12_15 (
. . . . . . . . syn2N [UkrSumy797_2009_11_13_f,
. . . . . . . . . . . . . MongoliaJP5756_2009_10_15,
. . . . . . . . . . . . . IndiaPune10604_2009_09, et al],
. . . . . . . . 22I,
. . . . . . . . syn166K,
. . . . . . . . syn300P (CCa) [H2 Avian, H6N1]
. . . . . . . . . . . . . . . . [IndiaPune6196_2009_08 (CCt),
. . . . . . . . . . . . . . . . . Vietnam2043_2009_12_01_TmX (CCa),
. . . . . . . . . . . . . . . . . HunanFur129_2010_01_13 (CCa),
. . . . . . . . . . . . . . . . . Slovenia5613_2009_12 (CCa),
. . . . . . . . . . . . . . . . . Minnesota40_2009_11_19 (CCa) w syn252V],
. . . . . . . . 377K [H9N2]),
. . . . Avian H1N1, Avian H2N3, Avian H10N7, Avian H11,
. . . . H5N1, H7N7 (Avian & Equine)
245V (gTC)
. . . . JapanNagoya1006_2009_08_25 (
. . . . . . . . 163E mix wt [NY4748_2009_07 with syn158G]
. . . . . . . . 245V mix wt,
. . . . . . . . 255R mix wt [Moldova351_2010_01_18 with 225G],
. . . . . . . . HA truncated after aa330)
246E synonymous (GAg)
. . . . CalifVRDL128_2009_12_22,
. . . . NorthCarolina56_2009_12_07 (
. . . . . . . . 100N,
. . . . . . . . syn137A,
. . . . . . . . syn246E,
. . . . . . . . 377K [H9N2]),
. . . . Texas77_E3_2009_10_06 (
. . . . . . . . . . . . 159S, syn173G, 219V, 226R, syn246E, 275A, 377K [H9N2]),
. . . . Niigata700_2009_06_22 mix,
. . . . S7, M7, 1918, tn,
. . . . H5N1, H6N1,
. . . . Avian H2N3, H11
246G (GgA)
. . . . Iceland163_2009 mix (159D),
. . . . H5N1 (Ggg), H9N2 (agA)
247A synonymous (GCt)
. . . . Victoria508_2010_07_24 (
. . . . . . . . 35I [H5N1],
. . . . . . . . 88P [H2N3, H5N1, H11],
. . . . . . . . . . . [HunanHechengSWL1616_2009-11-23,
. . . . . . . . . . . KoreaAF2376_2009_10_27
. . . . . . . . . . . . . . . with 280A and 290K],
. . . . . . . . syn102E [SingON2407_2009_12_13,
. . . . . . . . . . . . . . . Singapore544_2009_12_10,
. . . . . . . . . . . . . . . Brussels243_2009_11_09
. . . . . . . . . . . . . . . . . . . . with syn44L and 89G],
. . . . . . . . syn152I [CalifVRDL115_2009_12_04,
. . . . . . . . . . . . . . . NY6939_2009_12_11,
. . . . . . . . . . . . . . . tkOntarioFAV117_1C_2009_12_07
. . . . . . . . . . . . . . . . . . . . with 35I, syn219I, syn276H, syn456L, 463V, 523A,
. . . . . . . . . . . . . . . England1050_2009_12,
. . . . . . . . . . . . . . . Scotland103_2009_12,
. . . . . . . . . . . . . . . England1051_2009_12,
. . . . . . . . . . . . . . . ItalyAncona451_2009_11_27_f,
. . . . . . . . . . . . . . . NY6607_2009_11_24,
. . . . . . . . . . . . . . . CalifVRDL107_2009_11_15,
. . . . . . . . . . . . . . . CalifVRDL101_2009_11_05,
. . . . . . . . . . . . . . . DC_114_2009_11_04,
. . . . . . . . . . . . . . . England94800096_2009_11,
. . . . . . . . . . . . . . . Calif_SD35_2009_10_26,
. . . . . . . . . . . . . . . NY5447_2009_10_23,
. . . . . . . . . . . . . . . CalifVRDL84_2009_10_09,
. . . . . . . . . . . . . . . CalifVRDL87_2009_10_09,
. . . . . . . . . . . . . . . IndiaPune6196_2009_08,
. . . . . . . . . . . . . . . IndiaDhule9433_2009_08,
. . . . . . . . . . . . . . . SantoDomingoWR1057N_2009_07_02,
. . . . . . . . . . . . . . . SantoDomingoWR1058N_2009_07_02,
. . . . . . . . . . . . . . . SantoDomingoWR1059N_2009_06_30],
. . . . . . . . 206S,
. . . . . . . . syn219I [CalifVRDL115_2009_12_04
. . . . . . . . . . . . . . . . . with 35I, syn152I, syn276H, syn456L, 463V, 523A,
. . . . . . . . . . . . . . FL_Pen213_2009_11_17
. . . . . . . . . . . . . . . . . . . . with 35I, syn152I, 273A, syn456L, 463V, 523A,
. . . . . . . . . . . . . . CalifVRDL107_2009_11_15
. . . . . . . . . . . . . . . . . . . . with 35I, syn152I, syn276H, syn456L, 463V, 523A,
. . . . . . . . 238D (GAc) [H2N3, H7N3, H7N7],
. . . . . . . . . . . . . . . . . . [Belgorod2_2010-03-15 (GAt),
. . . . . . . . . . . . . . . . . . Kaliningrad01_2009_11_02 (GAt)
. . . . . . . . . . . . . . . . . . . . . . . . with 225E and 226R,
. . . . . . . . . . . . . . . . . . AthensINS398_2010-01-24 GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_DA_2009-09-26 (GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_KG_2009-09-25 (GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_MA_2009-09-25 (GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_SHD_2009-09-25 (GAt),

. . . . . . . . . . . . . . . . . . KaliningradCRIE_ZD_2009-09-25 (GAt)],
. . . . . . . . syn247A [Belize8756_2009_10_08,
. . . . . . . . . . . . . . . Singapore93_2009_06_22]
. . . . . . . . syn254P,
. . . . . . . . 272G [Niigata19_2009_12_31,
. . . . . . . . . . . . GuangdongSWL36_2009_11_29],
. . . . . . . . syn276H,
. . . . . . . . syn388K [H5N1],
. . . . . . . . . . . . . . . [NagasakiHA_10_28_2010_03_23
. . . . . . . . . . . . . . . . . . . . . with 22I,
. . . . . . . . . . . . . . . NagasakiHA_10_26_2010_03_15
. . . . . . . . . . . . . . . . . . . . . with 22I, syn103E,
. . . . . . . . . . . . . . . NagasakiHA_10_24_2010_03_08
. . . . . . . . . . . . . . . . . . . . . with syn103E,
. . . . . . . . . . . . . . . GuangxiLonganSWL1990_2010_02_08
. . . . . . . . . . . . . . . . . . . . . with 453K, syn462E,
. . . . . . . . . . . . . . . JiangxiDonghuSWL15_2010_01_04
. . . . . . . . . . . . . . . . . . . . . with syn106E, 149R, syn456L (TTg),
. . . . . . . . . . . . . . . ViennaINS142_2009_11_26
. . . . . . . . . . . . . . . . . . . . . with syn97D, 99T,
. . . . . . . . . . . . . . . CzechUsti208_2009_11_25
. . . . . . . . . . . . . . . . . . . . . with 268T,
. . . . . . . . . . . . . . . GhanaFS_1921_2009_11_11,
. . . . . . . . . . . . . . . Alaska44_2009_11_17
. . . . . . . . . . . . . . . . . . . . . with syn275V, 276N,
. . . . . . . . . . . . . . . CalifVRDL76_2009_09_21
. . . . . . . . . . . . . . . . . . . . . with syn283Q,
. . . . . . . . . . . . . . . Taiwan206_2009_09_18,
. . . . . . . . . . . . . . . Taiwan177_2009_09_18,
. . . . . . . . . . . . . . . Taiwan167_2009_09_18,
. . . . . . . . . . . . . . . Taiwan156_2009_09_18,
. . . . . . . . . . . . . . . Taiwan143_2009_09_15
. . . . . . . . . . . . . . . . . . . . . with 205E mix,
. . . . . . . . . . . . . . . Utah20_C2_2_2009_07_25_VxX
. . . . . . . . . . . . . . . . . . . . . with 159D, 206S, 227G
. . . . . . . . . . . . . . . Slovenia2687_2009_07_01
. . . . . . . . . . . . . . . . . . . . . with 35I, 206S],
. . . . . . . . syn456L,
. . . . . . . . 463V,
. . . . . . . . 523A [Nebraska02_2010_03_11,
. . . . . . . . . . . . NagasakiHA1022_2010_03_01_syn413K,
. . . . . . . . . . . . DomRepublic3768_2009_12_15,
. . . . . . . . . . . . NY6939_2009_12_11,
. . . . . . . . . . . . CalifVRDL115_2009_12_04,
. . . . . . . . . . . . NY6607_2009_11_24,
. . . . . . . . . . . . RheinlandPfalz81_2009_11_23,
. . . . . . . . . . . . Berlin210_2009_11_16,
. . . . . . . . . . . . BadenWurttemberg511_2009_11_16,
. . . . . . . . . . . . CalifVRDL107_2009_11_15,
. . . . . . . . . . . . FL_Pensacola40_2009_11_09,
. . . . . . . . . . . . CalifVRDL101_2009_11_05,
. . . . . . . . . . . . DC114_2009_11_04,
. . . . . . . . . . . . Calif_SD35_2009_10_26,
. . . . . . . . . . . . NY5447_2009_10_23,
. . . . . . . . . . . . CalifVRDL84_2009_10_09,
. . . . . . . . . . . . CalifVRDL87_2009_10_09,
. . . . . . . . . . . . KuwaitN13013_2009_08_31_syn413K]),
Belize8756_2009_10_08,
Singapore93_2009_06_22
247T (aCA)
. . . . Guangdong5024_2009_10_20 (syn52K, 377K [H9N2], 439G)
248N (AaT)
. . . . Lisboa134_2009_12_15 (
. . . . . . . . 27I,
. . . . . . . . 248N,
. . . . . . . . syn397G [tn, H5N1]),
. . . . tkOntarioFAV110_2009 _10_23 (
. . . . . . . . 2E,
. . . . . . . . 38V,
. . . . . . . . 208K,
. . . . . . . . 248N,
. . . . . . . . 296H,
. . . . . . . . 512K),
. . . . JapanKobe91615_2009_07 (
. . . . . . . . 248N,
. . . . . . . . syn343G (GGc)),
. . . . S9, S7, M7, Sask
. . . . Avian H2N3, H3N8, H5N1, H6N1, H7N7, H9N2, H11

The truth is in the sequences.

This ongoing analysis funded by concerned families, including HOD, CSB, BMS and GJV.

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