Publish Date : 2013-10-15
Last Update : 2013-11-18
Map - Active and Detailed |
57 HA Sequences
On 2013-10-08, the National Influenza Centre for Northern Greece released a total of 57 pH1N1 Hemagglutinin sequence fragments at GISAID having 2 from early 2013, but with the larger set sampled during January and February 2011 [map]. All 57 patients sought medical attention. The Neuraminidase segments were not released. A total of 9 fatalities are documented and 6 subjects were under the age of 60 at the time of their death from Influenza.
Greek Fatalities | ||||||||||||||||||||||||||||||||||||||||||||
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Genetic diversity and pathogenic vigor are demonstrated as these deaths are found on 3 separate backgrounds: 2 established clades and 1 off-clade death. Diversity in excess of 4 clades was circulating contemporaneously in that region during the 36 days of 2011 sampling. Sequences covering hospitalisations total 4 in this deposit.
Greek Hospitalisations | ||||||||||||||||||||||||
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The genetics of Vaccine Escape are evident in 3 sequences across 2 clades, including 2 fatalities. HA 225N is shown on an unusual background in the area of Xanthi [EPI476404]. Dual infections signalled by mixtures feature on these fragments, including one of the fatalities. The Komotini [EPI475900] sequence shows Clade1:189T crossing onto Clade2:188T.
Greek Vaccine Escape Early 2011 | ||||||||||||||||||||
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We have annotated these HA fragments and placed them geographically throughout Greece for reference [map].
Isolate Metrics | |||||||||||||||||||||||||||||
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Hemagglutinin Sequences
. . . . GreeceKavala464_48F_2013_02_01 (
. . . . . . . . A/Kavala/464/2011
. . . . . . . . Clade5:208K_219V
. . . . . . . . A/Kavala/464/2011
. . . . . . . . Clade5:208K_219V
. . . . . . . . GISAID HA EPI475832
. . . . . . . . GISAID Isolate EPI_ISL_148171
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn47L (CTg),
. . . . . . . . 100N,
. . . . . . . . syn102E (GAa),
. . . . . . . . syn170N (AAc),
. . . . . . . . 208K,
. . . . . . . . 219V,
. . . . . . . . syn221P (CCt),
. . . . . . . . 252L,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki410_52F_2013_01_31_f (
. . . . . . . . A/Thessaloniki/410/2011
. . . . . . . . A/Thessaloniki/410/2011
. . . . . . . . GISAID HA EPI476396
. . . . . . . . GISAID Isolate EPI_ISL_148268
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn174K (AAg),
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 200V mix wt,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKilkis1524_52F_2011_02_24_s (
. . . . . . . . A/Kilkis/1524/2011
. . . . . . . . A/Kilkis/1524/2011
. . . . . . . . GISAID HA EPI474960
. . . . . . . . GISAID Isolate EPI_ISL_148032
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn160S (TCg),
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki1391_47M_2011_02_21_VxX_f (
. . . . . . . . A/Thessaloniki/1391/2011
. . . . . . . . A/Thessaloniki/1391/2011
. . . . . . . . GISAID HA EPI476395
. . . . . . . . GISAID Isolate EPI_ISL_148267
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 155I [H5N1],
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki1378_50M_2011_02_18_s (
. . . . . . . . A/Thessaloniki/1378/2011
. . . . . . . . A/Thessaloniki/1378/2011
. . . . . . . . GISAID HA EPI475846
. . . . . . . . GISAID Isolate EPI_ISL_148185
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki1329_56F_2011_02_17_f (
. . . . . . . . A/Thessaloniki/1329/2011
. . . . . . . . A/Thessaloniki/1329/2011
. . . . . . . . GISAID HA EPI476409
. . . . . . . . 10 Polymorphisms (6 Amino and 4 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn52P (CCc),
. . . . . . . . 54R [avH1N1],
. . . . . . . . 58W,
. . . . . . . . syn62G (GGg),
. . . . . . . . 64V [avH1N1, H7N7, H9N2],
. . . . . . . . 65R,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . syn286K (AAa),
. . . . . . . . 303L [H13N2],
. . . . . . . . HA Truncated after aa330)
. . . . GreeceAlexandroupolis1290_79M_2011_02_16 (
. . . . . . . . A/Alexandroupolis/1290/2011
. . . . . . . . A/Alexandroupolis/1290/2011
. . . . . . . . GISAID HA EPI476393
. . . . . . . . GISAID Isolate EPI_ISL_148265
. . . . . . . . 5 Polymorphisms (2 Amino and 3 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn163K (AAa),
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . syn192Q (CAg),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceAlexandroupolis1219_46M_2011_02_15 (
. . . . . . . . A/Alexandroupolis/1219/2011
. . . . . . . . A/Alexandroupolis/1219/2011
. . . . . . . . GISAID HA EPI475845
. . . . . . . . GISAID Isolate EPI_ISL_148184
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn163K (AAa),
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . syn192Q (CAg),
. . . . . . . . 241E [H5N1, avH1N1farm, H13N2],
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki1151_49F_2011_02_14_f (
. . . . . . . . A/Thessaloniki/1151/2011
. . . . . . . . A/Thessaloniki/1151/2011
. . . . . . . . GISAID HA EPI476400
. . . . . . . . GISAID Isolate EPI_ISL_148272
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . syn304G (GGg),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki1164_76M_2011_02_14_f (
. . . . . . . . A/Thessaloniki/1164/2011
. . . . . . . . Clade5:208K_219V
. . . . . . . . A/Thessaloniki/1164/2011
. . . . . . . . Clade5:208K_219V
. . . . . . . . GISAID HA EPI476399
. . . . . . . . GISAID Isolate EPI_ISL_148271
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn47L (CTg),
. . . . . . . . 100N,
. . . . . . . . syn102E (GAa),
. . . . . . . . syn170N (AAc),
. . . . . . . . 208K,
. . . . . . . . 219V,
. . . . . . . . syn221P (CCt),
. . . . . . . . 252L,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki1168_54F_2011_02_14_s (
. . . . . . . . A/Thessaloniki/1168/2011
. . . . . . . . A/Thessaloniki/1168/2011
. . . . . . . . GISAID HA EPI475829
. . . . . . . . GISAID Isolate EPI_ISL_148168
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 116M,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki1167_76M_2011_02_14 (
. . . . . . . . A/Thessaloniki/1167/2011
. . . . . . . . A/Thessaloniki/1167/2011
. . . . . . . . GISAID HA EPI475828
. . . . . . . . GISAID Isolate EPI_ISL_148167
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn62G (GGt),
. . . . . . . . 100N,
. . . . . . . . 173R [avH7N9 2011, H5N1, avH1N1],
. . . . . . . . 188T,
. . . . . . . . syn239P (CCa),
. . . . . . . . syn304G (GGg),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceGiannitsa1052_78F_2011_02_10_f (
. . . . . . . . A/Giannitsa/1052/2011
. . . . . . . . A/Giannitsa/1052/2011
. . . . . . . . GISAID HA EPI476401
. . . . . . . . GISAID Isolate EPI_ISL_148273
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 276Y,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki983_77F_2011_02_09 (
. . . . . . . . A/Thessaloniki/983/2011
. . . . . . . . A/Thessaloniki/983/2011
. . . . . . . . GISAID HA EPI476392
. . . . . . . . GISAID Isolate EPI_ISL_148264
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki774_46M_2011_02_08 (
. . . . . . . . A/Thessaloniki/774/2011
. . . . . . . . A/Thessaloniki/774/2011
. . . . . . . . GISAID HA EPI476402
. . . . . . . . GISAID Isolate EPI_ISL_148274
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceAlexandroupolis819_79M_2011_02_08 (
. . . . . . . . A/Alexandroupolis/819/2011
. . . . . . . . Clade5:208K_219V
. . . . . . . . A/Alexandroupolis/819/2011
. . . . . . . . Clade5:208K_219V
. . . . . . . . GISAID HA EPI476391
. . . . . . . . GISAID Isolate EPI_ISL_148263
. . . . . . . . 10 Polymorphisms (4 Amino and 6 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn47L (CTg),
. . . . . . . . 100N,
. . . . . . . . syn102E (GAa),
. . . . . . . . syn162P (CCg),
. . . . . . . . syn170N (AAc),
. . . . . . . . 208K,
. . . . . . . . 219V,
. . . . . . . . syn221P (CCt),
. . . . . . . . 252L,
. . . . . . . . syn319T (ACg),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki839_59M_2011_02_08_VxX (
. . . . . . . . A/Thessaloniki/839/2011
. . . . . . . . A/Thessaloniki/839/2011
. . . . . . . . GISAID HA EPI475899
. . . . . . . . GISAID Isolate EPI_ISL_148198
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn118E (GAa),
. . . . . . . . 155I [H5N1],
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceFlorina807_53F_2011_02_08 (
. . . . . . . . A/Florina/807/2011
. . . . . . . . A/Florina/807/2011
. . . . . . . . GISAID HA EPI475851
. . . . . . . . GISAID Isolate EPI_ISL_148190
. . . . . . . . 5 Polymorphisms (4 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn24E (GAg),
. . . . . . . . 87I [pH1N1 TamiFlu Resistance NA 247N],
. . . . . . . . 100N,
. . . . . . . . 110P mix wt,
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceXanthi803_62M_2011_02_08 (
. . . . . . . . A/Xanthi/803/2011
. . . . . . . . A/Xanthi/803/2011
. . . . . . . . GISAID HA EPI475849
. . . . . . . . GISAID Isolate EPI_ISL_148188
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn42G (GGa),
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceAlexandroupolis815_46x_2011_02_08 (
. . . . . . . . A/Alexandroupolis/815/2011
. . . . . . . . A/Alexandroupolis/815/2011
. . . . . . . . GISAID HA EPI475844
. . . . . . . . GISAID Isolate EPI_ISL_148183
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki677_79M_2011_02_07 (
. . . . . . . . A/Thessaloniki/677/2011
. . . . . . . . A/Thessaloniki/677/2011
. . . . . . . . GISAID HA EPI476407
. . . . . . . . GISAID Isolate EPI_ISL_148279
. . . . . . . . 6 Polymorphisms (5 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 39R,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 226R,
. . . . . . . . 318G,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki678_56M_2011_02_07_f (
. . . . . . . . A/Thessaloniki/678/2011
. . . . . . . . A/Thessaloniki/678/2011
. . . . . . . . GISAID HA EPI476398
. . . . . . . . GISAID Isolate EPI_ISL_148270
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki672_59M_2011_02_07 (
. . . . . . . . A/Thessaloniki/672/2011
. . . . . . . . A/Thessaloniki/672/2011
. . . . . . . . GISAID HA EPI475857
. . . . . . . . GISAID Isolate EPI_ISL_148196
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki712_47M_2011_02_07 (
. . . . . . . . A/Thessaloniki/712/2011
. . . . . . . . A/Thessaloniki/712/2011
. . . . . . . . GISAID HA EPI475843
. . . . . . . . GISAID Isolate EPI_ISL_148182
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . syn284T (ACg),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceSerres663_60M_2011_02_04 (
. . . . . . . . A/Serres/663/2011
. . . . . . . . A/Serres/663/2011
. . . . . . . . GISAID HA EPI475856
. . . . . . . . GISAID Isolate EPI_ISL_148195
. . . . . . . . 5 Polymorphisms (4 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 136S [H5N1, avH1N1, zH3N2, H9N2],
. . . . . . . . 146G,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki657_57M_2011_02_04 (
. . . . . . . . A/Thessaloniki/657/2011
. . . . . . . . A/Thessaloniki/657/2011
. . . . . . . . GISAID HA EPI475855
. . . . . . . . GISAID Isolate EPI_ISL_148194
. . . . . . . . 6 Polymorphisms (3 Amino and 3 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 173R [avH7N9 2011, H5N1, avH1N1],
. . . . . . . . 188T,
. . . . . . . . syn239P (CCa),
. . . . . . . . syn276H (CAt),
. . . . . . . . syn304G (GGg),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki654_64M_2011_02_04 (
. . . . . . . . A/Thessaloniki/654/2011
. . . . . . . . A/Thessaloniki/654/2011
. . . . . . . . GISAID HA EPI475848
. . . . . . . . GISAID Isolate EPI_ISL_148187
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceNaousa626_62M_2011_02_04 (
. . . . . . . . A/Naousa/626/2011
. . . . . . . . A/Naousa/626/2011
. . . . . . . . GISAID HA EPI475838
. . . . . . . . GISAID Isolate EPI_ISL_148177
. . . . . . . . 2 Polymorphisms (1 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn55L (TTa),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKavala564_58M_2011_02_03 (
. . . . . . . . A/Kavala/564/2011
. . . . . . . . A/Kavala/564/2011
. . . . . . . . GISAID HA EPI475837
. . . . . . . . GISAID Isolate EPI_ISL_148176
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 188T,
. . . . . . . . syn245F (TTt),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKilkis533_76M_2011_02_02 (
. . . . . . . . A/Kilkis/533/2011
. . . . . . . . A/Kilkis/533/2011
. . . . . . . . GISAID HA EPI476390
. . . . . . . . GISAID Isolate EPI_ISL_148262
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki516_51M_2011_02_02 (
. . . . . . . . A/Thessaloniki/516/2011
. . . . . . . . A/Thessaloniki/516/2011
. . . . . . . . GISAID HA EPI475915
. . . . . . . . GISAID Isolate EPI_ISL_148213
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn25K (AAa),
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceGrevena552_47M_2011_02_02 (
. . . . . . . . A/Grevena/552/2011
. . . . . . . . A/Grevena/552/2011
. . . . . . . . GISAID HA EPI475836
. . . . . . . . GISAID Isolate EPI_ISL_148175
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn34N (AAt),
. . . . . . . . syn122K (AAa),
. . . . . . . . 146G,
. . . . . . . . 188T,
. . . . . . . . 200T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki515_64M_2011_02_02 (
. . . . . . . . A/Thessaloniki/515/2011
. . . . . . . . A/Thessaloniki/515/2011
. . . . . . . . GISAID HA EPI475831
. . . . . . . . GISAID Isolate EPI_ISL_148170
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 49E [pH1N1 TamiFlu Resistant NA 247N],
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKavala470_46M_2011_02_01_f (
. . . . . . . . A/Kavala/470/2011
. . . . . . . . A/Kavala/470/2011
. . . . . . . . GISAID HA EPI476406
. . . . . . . . GISAID Isolate EPI_ISL_148278
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 174R [pH1N1 TamiFlu Resistance NA 247N, H13N2],
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKavala463_52M_2011_02_01 (
. . . . . . . . A/Kavala/463/2011
. . . . . . . . A/Kavala/463/2011
. . . . . . . . GISAID HA EPI476403
. . . . . . . . GISAID Isolate EPI_ISL_148275
. . . . . . . . 6 Polymorphisms (5 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 25R [Emergent H7N9 wt],
. . . . . . . . syn34N (AAt),
. . . . . . . . 100N,
. . . . . . . . 146G,
. . . . . . . . 188T,
. . . . . . . . 200T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki508_52M_2011_02_01 (
. . . . . . . . A/Thessaloniki/508/2011
. . . . . . . . A/Thessaloniki/508/2011
. . . . . . . . GISAID HA EPI475908
. . . . . . . . GISAID Isolate EPI_ISL_148207
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 305E [H5N1 wt],
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKavala469_50F_2011_02_01 (
. . . . . . . . A/Kavala/469/2011
. . . . . . . . A/Kavala/469/2011
. . . . . . . . GISAID HA EPI475841
. . . . . . . . GISAID Isolate EPI_ISL_148180
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki506_48F_2011_02_01 (
. . . . . . . . A/Thessaloniki/506/2011
. . . . . . . . A/Thessaloniki/506/2011
. . . . . . . . GISAID HA EPI475834
. . . . . . . . GISAID Isolate EPI_ISL_148173
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki503_50F_2011_02_01 (
. . . . . . . . A/Thessaloniki/503/2011
. . . . . . . . A/Thessaloniki/503/2011
. . . . . . . . GISAID HA EPI475833
. . . . . . . . GISAID Isolate EPI_ISL_148172
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 188T,
. . . . . . . . syn245F (TTt),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki407_66M_2011_01_31_f (
. . . . . . . . A/Thessaloniki/407/2011
. . . . . . . . A/Thessaloniki/407/2011
. . . . . . . . GISAID HA EPI476397
. . . . . . . . GISAID Isolate EPI_ISL_148269
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki446_76M_2011_01_31 (
. . . . . . . . A/Thessaloniki/446/2011
. . . . . . . . A/Thessaloniki/446/2011
. . . . . . . . GISAID HA EPI475920
. . . . . . . . GISAID Isolate EPI_ISL_148217
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki451_51M_2011_01_31 (
. . . . . . . . A/Thessaloniki/451/2011
. . . . . . . . A/Thessaloniki/451/2011
. . . . . . . . GISAID HA EPI475903
. . . . . . . . GISAID Isolate EPI_ISL_148202
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki447_56M_2011_01_31 (
. . . . . . . . A/Thessaloniki/447/2011
. . . . . . . . A/Thessaloniki/447/2011
. . . . . . . . GISAID HA EPI475839
. . . . . . . . GISAID Isolate EPI_ISL_148178
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 293F,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki453_47M_2011_01_31 (
. . . . . . . . A/Thessaloniki/453/2011
. . . . . . . . A/Thessaloniki/453/2011
. . . . . . . . GISAID Isolate EPI_ISL_148174
. . . . . . . . 7 Polymorphisms (3 Amino and 4 Silent)
. . . . . . . . 7 Polymorphisms (3 Amino and 4 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 69Q [Emergent H7N9 wt],
. . . . . . . . syn73L (CTt),
. . . . . . . . 137T,
. . . . . . . . syn163K (AAa),
. . . . . . . . 186P,
. . . . . . . . syn293L (CTt),
. . . . . . . . syn324V (GTt),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki329_46M_2011_01_28 (
. . . . . . . . A/Thessaloniki/329/2011
. . . . . . . . A/Thessaloniki/329/2011
. . . . . . . . GISAID HA EPI475842
. . . . . . . . GISAID Isolate EPI_ISL_148181
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn58C (TGc),
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceXanthi265_50M_2011_01_27_VxX (
. . . . . . . . A/Xanthi/265/2011
. . . . . . . . A/Xanthi/265/2011
. . . . . . . . GISAID Isolate EPI_ISL_148276
. . . . . . . . 10 Polymorphisms (6 Amino and 4 Silent)
. . . . . . . . 10 Polymorphisms (6 Amino and 4 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 33G,
. . . . . . . . syn47L (CTg),
. . . . . . . . 100N,
. . . . . . . . syn102E (GAa),
. . . . . . . . syn170N (AAc),
. . . . . . . . 208K,
. . . . . . . . 219V,
. . . . . . . . syn221P (CCt),
. . . . . . . . 225N,
. . . . . . . . 252L,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKomotini261_55M_2011_01_27 (
. . . . . . . . A/Komotini/261/2011
. . . . . . . . A/Komotini/261/2011
. . . . . . . . GISAID Isolate EPI_ISL_148199
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 188T,
. . . . . . . . 189T,
. . . . . . . . syn245F (TTt),
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki287_56F_2011_01_27_s (
. . . . . . . . A/Thessaloniki/287/2011
. . . . . . . . A/Thessaloniki/287/2011
. . . . . . . . GISAID HA EPI475853
. . . . . . . . GISAID Isolate EPI_ISL_148192
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki268_57F_2011_01_27 (
. . . . . . . . A/Thessaloniki/268/2011
. . . . . . . . A/Thessaloniki/268/2011
. . . . . . . . GISAID Isolate EPI_ISL_148191
. . . . . . . . 8 Polymorphisms (4 Amino and 4 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn47L (CTg),
. . . . . . . . 100N,
. . . . . . . . syn102E (GAa),
. . . . . . . . syn170N (AAc),
. . . . . . . . 208K,
. . . . . . . . 219V,
. . . . . . . . syn221P (CCt),
. . . . . . . . 252L,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceNaousa225_58F_2011_01_26 (
. . . . . . . . A/Naousa/225/2011
. . . . . . . . A/Naousa/225/2011
. . . . . . . . GISAID HA EPI475854
. . . . . . . . GISAID Isolate EPI_ISL_148193
. . . . . . . . 6 Polymorphisms (4 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 8V [avH1N1farm, H5N1, H13N2],
. . . . . . . . syn21T (ACg),
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 200V mix wt,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceKaterini199_51M_2011_01_25 (
. . . . . . . . A/Katerini/199/2011
. . . . . . . . A/Katerini/199/2011
. . . . . . . . GISAID HA EPI476408
. . . . . . . . GISAID Isolate EPI_ISL_148280
. . . . . . . . 4 Polymorphisms (2 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn92T (ACa),
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceSerres213_50M_2011_01_25 (
. . . . . . . . A/Serres/213/2011
. . . . . . . . A/Serres/213/2011
. . . . . . . . GISAID Isolate EPI_ISL_148189
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn60I (ATc),
. . . . . . . . 128D,
. . . . . . . . 318V [H5N1, avH1N1],
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki174_49F_2011_01_24 (
. . . . . . . . A/Thessaloniki/174/2011
. . . . . . . . A/Thessaloniki/174/2011
. . . . . . . . GISAID HA EPI476405
. . . . . . . . GISAID Isolate EPI_ISL_148277
. . . . . . . . 6 Polymorphisms (5 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 83G mix wt,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 253I,
. . . . . . . . 320E [pH1N1 HA 230I],
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki164_61M_2011_01_24 (
. . . . . . . . A/Thessaloniki/164/2011
. . . . . . . . A/Thessaloniki/164/2011
. . . . . . . . GISAID HA EPI475830
. . . . . . . . GISAID Isolate EPI_ISL_148169
. . . . . . . . 5 Polymorphisms (3 Amino and 2 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . syn52P (CCc) mix wt,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . 262K [Emergent H7N9 wt],
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki118_52M_2011_01_21 (
. . . . . . . . A/Thessaloniki/118/2011
. . . . . . . . A/Thessaloniki/118/2011
. . . . . . . . GISAID HA EPI475847
. . . . . . . . GISAID Isolate EPI_ISL_148186
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki73_36F_2011_01_19 (
. . . . . . . . A/Thessaloniki/73/2011
. . . . . . . . A/Thessaloniki/73/2011
. . . . . . . . GISAID HA EPI476394
. . . . . . . . GISAID Isolate EPI_ISL_148266
. . . . . . . . 3 Polymorphisms (2 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . syn179L (CTg),
. . . . . . . . 188T,
. . . . . . . . HA Truncated after aa330)
. . . . GreeceThessaloniki63_60M_2011_01_19 (
. . . . . . . . A/Thessaloniki/63/2011
. . . . . . . . A/Thessaloniki/63/2011
. . . . . . . . GISAID HA EPI475840
. . . . . . . . GISAID Isolate EPI_ISL_148179
. . . . . . . . 4 Polymorphisms (3 Amino and 1 Silent)
. . . . . . . . HA Truncated before aa4,
. . . . . . . . 100N,
. . . . . . . . 119V [H5N1],
. . . . . . . . 188T,
. . . . . . . . syn245F (TTt),
. . . . . . . . HA Truncated after aa330)
pH1N1 Influenza Hemagglutinin Segments elucidated at 2013-10-15-10_39_00_540770 by GeneWurx see.PolyDetector v0, Copyright 2007-2013.
Publication Copyright 2007-2013 GeneWurx.com, All Rights Reserved.
Publication Copyright 2007-2013 GeneWurx.com, All Rights Reserved.